XLOC_003339 (si:ch211-1a19.3)


Basic Information

Item Value
gene id XLOC_003339
gene name si:ch211-1a19.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13629528 ~ 13640471 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006536
TCCAACGTCTGACAATATCTATTTCAAAATGCACCAGAATCATTGCAAAAGTTCATAATTTAAGCACAGGAATTCAACACAAGGGGGGCCACAGCCCATGGAATCAGCCACCACCCTTCAACATTATGTAATCACCCCCAAACTCATGACTCATCAGTCGCTGGACACACTGAGCAGCAGAATTTCGAAGGTCCGTTCTAACTAGAATCAACACACACTGCTCAGAACTGATCATCCAGCAGAGGACGCTTGAAGTGTTACAAACACGCCTGTCAACATATTAATCTATCTTtataaaagaaaatgagtgacAGATATTGTCTATACAGTGTTGGTCAGTCACTCAGTTCTCCATTAACCATTCAAATCTGTTTCTTGAGTGCGTTTGTGTGCCTAAAAGGGGCATGGACACTCTGTGCTTGGCAAAAGTTCAGGAAACAGTGAGTTGCTCCTACATCGAGTctcttaaaaaatgtacaaattaagaACTAGCAGAGGTACCATGCTCTCCGAAGATCTGGGACACCTGCCAAGTCACTCCCCAGGACAGATGAATGGAAACTGAAACACACTCTTTCAGTGAAAACAGGAGGTGGTTTGGTTTTTTTCTCTAGCAGGCTGCGTTTCTAGCACCGAGGTACTGGATGACAGTCCCATCTCAGCAACAGAGCCACTCCCCTTTCCTGAGCCCAGCTTAGAGGGGAAACCCAGCCTTTAAAAGTTTCATTTCATTCAGAACAGAAATCTCTCACCAGACTCCTCGCTCCTCGGACATCTCCAACCTGAAAAGATGACAAGCTCGAAATCTTCTCAGACTACTCGTAATGTGGTGATCGCCTTTCTGGCTCTGTGGTCAATCATCTCGCTTATCATTATTGTGGTATGGGCCACTTCACCTGAGATGAAAGGAGCCAGTCAGTGTCGAGCAGAGATGCAAGACCTTAAGGAGAAGTATGAAGGGGCAAAAGTGGTGTGGACCAAAGACAGAAAAGCTCTGGAGGAGCTGGTGAGGCAGGGATGGAGGAACCAGACTGTCCTACAGAAGCAAATCGACCAGTCTAAGGAGCAAATACACGCTTTAAACCGTTCTTTGAATGTCAGCCTTGTAGAAAATGCCATCCTGAATGACAACATCACCACTTTGGAGAACAAAATTGAAGAATACAAGTTCATCGAGGGAAACCTCACTGAAGAAATCAATCTGCAGAAAGACCTGATTGACTCCCTGGAGCACAATTTGACTCTGAAGGCCCAGGAGTTGGCATCTTGCGAGGCTTTACAGCTCGCTTCTAAACAGCTCCAAACTGCTGCAGAGAAACAGAAGCTGGCCTGTGAGACCACCAAGCAATATTTACAGAAGCAACTGAACAAGTGCAAAAATGTGGAGCAACATGATGATGAACTTCCTGAATATCATGTTCAACCTAATGACAGCGGAGCCCAGGACATCACCAAAAGTAGCATGACACTGGCTGTGATTGTTTGCCTCGGTCTGCTTTTGATTCCATGTaagcttaatttaatttaatttaatttaatttaatgccaTAGATGTCAAtaatacaatgtttttttgttctctgatatctacacaatttttttttcgtaaattaatagtttttcatgttttgtgatacatatttttatttccacccatttatttatgcttttgaatagcattatgggaccttgattttttttttccaacgaattaaccttaaaaagttaatttaaaaaacgTTTAGTAGTTTAAAGTAATATCTTATCTGGGTTTGTGTTGTATATTAAGGTACAaaagccttgtaataaactgccagtacattttctgttatttcacagtgtaacggggagactgacacggagggatccattttgcagtatttattagacaGTCAAACACAAACATCCAATACGCACTAAAGTGCGAACACACATCAACAGTAATCAATAATGGTCATGGGGCTGGCGGctaacagacacagagtgatttaccaggcatagagcagtggcaggcggcgtggttcagagtccttgagacaggcttgggtcgagggcaggcagcgtggttcagagtccgtgtaacaagcAAGGGTCGttggcaggcagaaggcaactcagagtcagaaacagtccggggttatacacagaagatcaggcaggaaagaccgctcagtaatgctggccggggctaaacaagacttcgcaattaACTGGTGtctgagtgtggcttatatagggagCGTGGGAGAGTGGGTCGCACACCGGATTCGACACTCAGAGATGCAACATGGCacacacatgacagttggaagtatcgcacaccagacatgaacattcaaatattatttaatatgtaaCTTTTCAGAAGGTGCTCTGTGGTGTGGCAGAAATATGAATAGTGTCTCTAGTCGGAGCTGGGCATCGCAAAATACAGGCAACTTGGGTGCCGGTGTGCACCGAgagaaacaaatgttaaaaattctaaaatgcatggcacagcattatttttaataatgcattatttttattttacattatttttaaggggtttttcacctttaatttggataggatagtggaggttacagacaggtaagtagagagagagagagagaggaaggatcggcaaaggaacTCTAGTCAccatgagcaccatggtgctgtATGTCGGCATACTCAACCACTAGGTTATTGGTGCCAACATGGTTGTGAATATTATTGAGCTCTGCTTTGACTACATCTCTGACTCTAACAGagatgtactgtatatgaaaacACAGACAGAAGGTATTATCAACTGCTGCATAATCAGATTAGTTTTAGAAAGTTTACTGGTATTCTTTAACTCAAGAATAATTACTGCAAGAGTTGAGTGATATGACATgatgcataaacatgcattaaacacttatagaccattttgagggatgtaaacaaaaacaatcgtcccaacatatttcctgttttacattttgaattttttatagcttccgagaatccaaaaagagacacaacaatgttatgacagctgttttaagttatgattgaattgcctcttgttacagtaatgaaatagtttgataacacgcaggaaatgttcatgggccaatgacatgaccacattaaaatggtctatacacaGCAATTTacacaatatacacattaaactaacAGGAGATACAATTAAACAGAGTCTTCGGAATGCCACGGAACAAATATGTAATCAACTTGCTTGTTTTATAGATAGCTTGTTTACACTTCCTGCTTCTCCCATTTTCAGAATAAGTGTCCCACATACACTTTAAGAAATGCAAACTAATCCAAACATTGGGTTATATTTGGtcataataattcaattaaaaaaatacccAACAGCTGGGTTAGTTCAACACCCAGAACTGGGTTGAAATACATCAACCTggtattttttagagtgtagtacAAGCTTAGAAAAACTtgaaggtcccgtgaagtgcttttaaatatgcatttttaaatatgcacttacacatgtgagccactttaggtttagacccattACCTTTAAAAGATCCTTAAACGATTTTTGCTAACTGTGGCCTACATTTGTCCTCattcatttgggccaaatttatcaTCTTCCACATGGGCTGCATTAGGCTCactttcagattacattttgccataagtgccaaatctttgccttaaatggcccatatatgaattcaAATCTTTAGCTCCCCTTTGCCAATGTACAGGTGGTGTtccttcaggctcacattcagattgtCACGGCtgaaggaagaccaccagtgccgcatagcTGCCTAAAGTGGTCCACATTCGTTTGCTATCTGAGTATGAGTtgatgaaaatctgaaatatgaggtgacatgaataaAATTGTTAAGttcatttaggcggaagtgacaaactacaagcttataaacaacaattttgtcattgtttatatatatataaagttagatagatatatatagtaAGTTAGAAATCTTAAAAACGAgcatactaacatctaaaaaaattattttaatttcatgggacctttaataaataagggaaaatGTTCTGCCTGGTTTGAGCATATAATTAATCCCGTATGCAACATAACAGTCTAACAGTTTTGTTCTGATTAGCTTGTTTTACACATGGAATTTTGCACTCACTGGATTTACATtagaatgaggaaacaatggtgCTTGAAGCTCACAGTATGTCATTTCCTTGCTGCACTCTGCATATCCAGTTTTTCACTTTGTACTACTTTCAATGCTTTCCTATCTTAGAATCTGAgtcatattaaaaatattcaagCTGATTACAGTCTCTGTTGTGTCTGTGCTGATATTGAATAAGTATCCTGTGTACTGATGAGACCCTGGTTTATTCACAGAGACGAGAGGAAGGCTGGATGTTGGAGTATTTGGGTACATGTTATCGGTGCAACACTGTTCTGAGGACACCGCTCTGGTGCACTTGTAACCCTGGACTTGAAGCGCATTTAAATCTACATTTGGAATGAGAACGCTGATCCAGAATTGATGACAAAATACGAAACGCTGATGGAAACAATTATGATAATGAGTACTTTTGGTAATGAGCACGTAAAAGTGATCTGACGACATGGAcatctgacagaaatgaaaaattatttaacaaatgtaTGCTGTACATCATTGGAGGTCATTCTtgcattagtattttttgtcctattattttgtaaaacagaTTTTAGAGTCTAGAAgtttcagaaatgtatttatttttatttgaagtaaGCAGGCCTATTTGCCAAAGAGATATTAATGTTCAGAGCTTTTCCAAAATTTGATCGCACTGTTTTACCACTGTCTTTTTGTTTTTAGGAAATTTATGAGAACTTATTGAATGATGTTTTTGAATAAAGATACAATGTTGACTCTCTGATTTTGACTTGATAATAGACAGCCTATTTTCCCCATCAGCATTAGGTAAACCTTTTTAACAATGATCTGATGAAAGAGTTCAGAGAACATATTTACTATAGAGTGGAAGCAAAAGGGTAAATGAGGGACACACAGAGAaggatacatttttaaaatttaatatctTCAAATAGGGGTagcgcagtggctcagtggttagcactgtctccttacagcaagaaggtcgctgggtcagttggcatctggagtttgcatattctcccagtGTTCGTATGGGTTTTtgtccaggtgctccggtttcccccacagtctaaagacatgccgttcagataaattaaataaacttaaattggccattgtgcatgtgtgtgaatatgagtgtgtatggatgtttcccagtaatgggttgcagctggaagggcatccgctgtgtaaaatatgtgctggataagttaagtaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaacaaagcacacCACAGTATACCTCCAAACTCAACCATAAAACTATAGCTTAGACAACAGACAGCATATTGTTGTTTGTCCATTTATTATGTTACTGAGAAAACTTTCttaaaagtacttaaaaacaatattttcaaagGCACAGTCCCCCAAATACGATCAAACGTACATGAAGGACCTTCCCttgggtttaaaatattatttggaaaatattttgtttatatttaaattatagaatgtataaagttaaataatttagttataaAGCATAAAACTATAAAGTCAAATTTCTT
>TCONS_00006537
GTGAAAACAGGAGGTGGTTTGGTTTTTTTCTCTAGCAGGCTGCGTTTCTAGCACCGAGGTACTGGATGACAGTCCCATCTCAGCAACAGAGCCACTCCCCTTTCCTGAGCCCAGCTTAGAGGGGAAACCCAGCCTTTAAAAGTTTCATTTCATTCAGAACAGAAATCTCTCACCAGACTCCTCGCTCCTCGGACATCTCCAACCTGAAAAGATGACAAGCTCGAAATCTTCTCAGACTACTCGTAATGTGGTGATCGCCTTTCTGGCTCTGTGGTCAATCATCTCGCTTATCATTATTGTGGTATGGGCCACTTCACCTGAGATGAAAGGAGCCAGTCAGTGTCGAGCAGAGATGCAAGACCTTAAGGAGAAGTATGAAGGGGCAAAAGTGGTGTGGACCAAAGACAGAAAAGCTCTGGAGGAGCTGGTGAGGCAGGGATGGAGGAACCAGACTGTCCTACAGAAGCAAATCGACCAGTCTAAGGAGCAAATACACGCTTTAAACCGTTCTTTGAATGTCAGCCTTGTAGAAAATGCCATCCTGAATGACAACATCACCACTTTGGAGAACAAAATTGAAGAATACAAGTTCATCGAGGGAAACCTCACTGAAGAAATCAATCTGCAGAAAGACCTGATTGACTCCCTGGAGCACAATTTGACTCTGAAGGCCCAGGAGTTGGCATCTTGCGAGGCTTTACAGCTCGCTTCTAAACAGCTCCAAACTGCTGCAGAGAAACAGAAGCTGGCCTGTGAGACCACCAAGCAATATTTACAGAAGCAACTGAACAAGTGCAAAAATGTGGAGCAACATGATGATGAACTTCCTGAATATCATGTTCAACCTAATGACAGCGGAGCCCAGGACATCACCAAAAGTAGCATGACACTGGCTGTGATTGTTTGCCTCGGTCTGCTTTTGATTCCATAGACGAGAGGAAGGCTGGATGTTGGAGTATTTGGGTACATGTTATCGGTGCAACACTGTTCTGAGGACACCGCTCTGGTGCACTTGTAACCCTGGACTTGAAGCGCATTTAAATCTACATTTGGAATGAGAACGCTGATCCAGAATTGATGACAAAATACGAAACGCTGATGGAAACAATTATGATAATGAGTACTTTTGGTAATGAGCACGTAAAAGTGATCTGACGACATGGAcatctgacagaaatgaaaaattatttaacaaatgtaTGCTGTACATCATTGGAGGTCATTCTtgcattagtattttttgtcctattattttgtaaaacagaTTTTAGAGTCTAGAAgtttcagaaatgtatttatttttatttgaagtaaGCAGGCCTATTTGCCAAAGAGATATTAATGTTCAGAGCTTTTCCAAAATTTGATCGCACTGTTTTACCACTGTCTTTTTGTTTTTAGGAAATTTATGAGAACTTATTGAATGATGTTTTTGAATAAAGATACAATGTTGACTCTCTGA

Function

symbol description
si:ch211-1a19.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-322 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000100968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006536 False 5735 mRNA 0.39 4 13629528 13640471
TCONS_00006537 True 1462 mRNA 0.42 5 13630107 13639662

Neighbor

gene id symbol gene type direction distance location
XLOC_003338 arrdc2 coding upstream 95746 13524504 ~ 13533782 (+)
XLOC_003337 si:dkey-13m1.5 coding upstream 111682 13507053 ~ 13517846 (+)
XLOC_003336 homer3b coding upstream 123586 13423776 ~ 13505942 (+)
XLOC_003335 si:dkey-13m1.2 coding upstream 215557 13366773 ~ 13413971 (+)
XLOC_003334 abcb11b coding upstream 357443 13223625 ~ 13272085 (+)
XLOC_003340 wdr18 coding downstream 1686 13642157 ~ 13789451 (+)
XLOC_003341 CR555295.2 coding downstream 177098 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 coding downstream 224375 13864846 ~ 13864964 (+)
XLOC_003343 grin3bb coding downstream 363765 14004236 ~ 14064984 (+)
XLOC_003344 CT956066.1 coding downstream 441069 14081540 ~ 14082177 (+)
XLOC_003318 CR450764.6 misc upstream 917532 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 935265 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 943929 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 949500 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1005677 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 2482315 16122786 ~ 16123082 (+)
XLOC_003332 NA non-coding upstream 434931 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 477143 13151919 ~ 13152385 (+)
XLOC_003322 NA non-coding upstream 844469 12782215 ~ 12785059 (+)
XLOC_003319 NA non-coding upstream 911126 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 1106499 12522770 ~ 12523029 (+)
XLOC_003353 BX571942.1 non-coding downstream 790802 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 1221815 14862286 ~ 14863542 (+)

Expression


Co-expression Network