LOC110493271 (LOC106566056)


Basic Information

Item Value
gene id LOC110493271
gene name LOC106566056
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80947799 ~ 80978439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950746.1
CGAGATCCTGATTTgctcaggctgtgtgtgtgaaaACATGGCAGGCATGAGTGCAGCAGGTCCTGGGTCGGCTTCGGCTGCTGGACCGGTTCAACAAGGACTTAAAGAAGCCCTGATTGAGACGTTGACGGCTATCCTGTCCCCGGTTCAAGAAGTGCGAGCAGCCGCGGAGGAGCAAATAAAAGTGTTGGAAGTGACAGAGGagtttggagtccacctggcgGAGCTAACTGTGGACCCTCGGGGAGCTCTGGCCATTCGTCAGTTGGCCTCAGTCATCCTTAAGCAGTATGTGGAGACCCACTGGTGTTCCCTATCTGAGAAGTTCAGACCCCCAGAGACCACAGACCGGgccAAGGCAGCCATCAGGGAGCTGTTGCCAGGAGGCCTGAGGGAGTCCATCAGTAAGGTGCGGTCCAGTGTGGCATATGCTGTGTCGGCCATTGCCCACTGGGACTGGCCCGAGGCCTGGCCTCAGCTCTTCACCATCCTCATGGACATGCTGGTCAGTGGCGACGTCAACGCAGTGCATGGGGCAATGAGGGTCCTCACAGAGTTTACCCGTGAGGTGACAGACACTCAGATGCCTCTGGTGGCTCCGGTGATCCTGCCTGAGATGTACAAGATCTTCTCCATGATGGAGATCTACAGCATCCGTACCCGCTCCAGAGCCGTGGAGATCTTCTCCACCTGTGCCAACCTGATCTGTGCGATAGAGGAGCTGGAGAAGGGAGCAGCCAAGGCCCTGATCTTCCCTGTGGTGCAGCAGTTCACTGAGGCGTTCATTCTGGCCTTGCAGATGCCTGATGGACCCTCCTCAGACAGCGGCCTCAAGATGGAGGTCCTAAAGGCCGTGACAGCTTTAGTGAAGAACTTCCCTAAACCCATGGTGTCGTCCATGCAGCAGATCCTGCCCATCGTCTGGAACACCCTGACAGAGAGTGCCGCTTTTTATGTCAGAACAGAGGTCAATTACACAGAGGAGGTAGACGATCCAATTGACTCTGATGGTGAGGTTCTGGGCTTTGAGAACCTGGTGTTTAGCATCTTTGAGTTTGTTCACACTTTGCTGGAGAACAGCAAGTTCAAGAGCACAGTGAAGAAGGCTCTTCCTGAGCTTATCTACTACATCATCCTCTACATGCAGATCACGGAGGATCAGATCAAGGTGTGGACGGCCAACCCCCAGCAGTTTGTGGAGGACGAGGATGACGACACCTTCTCCTACTCCGTCAGGATCTCAGCCCAGGACCTGCTGCTGGCTGTGGCGACAGAGTTCCAGAACGAGAGTGCGGCAGCGTTGGCTGCAGCAGCAACAAGGCACCTGCAGGATGCCGAGCAGGCCAAGAACAGTGGCAATGAGCACTGGTGGAAGATCCATGAGGCCTGTATGTTAGCTCTGGGCTCAGTGAAGACCATCATCACAGAGAACGTGAAGAACGGCCGTGTTCAGTTTGATATGCACGGCTTCCTGGCTAACGTCATCCTGGCTGACCTTAACCTCACAGcgGCCTCTCCGTTCTTGCTGGGCCGAGCCCTGTGGGCGGCCAGCCGCTTCACAGCAGCCATGTCCCCTGAGCTCATCCAGCAGTTCCTCCAGGCCACCGTCAGCGGCCTGCACGACAGTCAGCCCCCCTCAGTCCGCATCTCAGCCGTACGCGCCATCTGGGGGTACTGTGACCAGTTGAAGCTGTCTGAGAGTACCCATGTCCTACAGCCGTtcctgcctgctgttctggacGGACTGGTGCAGCTGGCAGCCCAGTTCAGCTCTGAGGTTCTCACCCTGGTCATGGAGACACTGTGTATCGTCTGCACTGTGGACCCAGCCTTCACTACCAGCGCAGAGAACAAGATCTGCCCCCTCACCATCGCCATCTTTCTCAAGTATAGTAACGacCCGGTGGTGGCGTCTCTGGCCCAGGACATCTTTAAGGAACTGTCCCAGATCGAGGCGTGTCAGGGCCCCATGCAGATGCGCCTCATCCCCACCCTGGTCAGCATCATGCAGGCCCCGCCTGACAAGATCCCCTCCGGTCTGTGTGCAACCGCCATAGACATCTTGACCACGGTGGTCCGACACACCAAACCCCCGCTCTCTGAGATGCTGGTCTGCCAGGCCTTCCCTGTGGTGGCCCAGTGTACCCTCCGCACAGACGACAACACCAcaatacagAACGGGGGTGAGTGTCTGCGGGCGTATGTGTCAGTGGCCCTGGAGCAGGTGGGCCAGTGGAGGGACACGGAGGGCCACAGTGGTCTGTGGTACGTGATGCAGGTGGTCAGTCAACTGCTTGACCCCAGGACATCAGAATTCACCGCTGCCTTCGTGGGCCGTTTGGTGTCCACGCTGATCGCCCGCGCCGGCACTGAGCTTGGAGAGCAGTTAGACCAAATCCTCAGAGCCATCCTCAGCAAGATGCAGCAGGCCGAGACCCTCAGCGTCATGCAGtctctgatCATGGTATTTGCCCACCTGGTCCACTCTCAGCTGGAGCCTCTGTTGGAGTTCCTGTGCAGTCTGCCGGGTCCAACGGGGAAACCAGCCCTGGAGTTTGTCATGGCTGAGTGGATGAGCCGACAGCACCTCTTCTACGGACAGTACGAGGGTAAAGTCAGTACGGTAGCCCTGTGTAAGCTGCTGCAGCACGGCCTCAACACCAATGACAAGCGTCTCCAGGACATCGTGGTCAAGGGAGAGGAGATCTTTGGCCCTGACGAGGGCATCCGCACGCGTTCCAAGTCTGCCAAGAaTCCAGAGAAGTGGACCAACATTCCATTGCTAGTGAAGGTCTTTAAGCTGATTGTCAATGAGCTGTCGTCAGTGGTGGAGGCCAACACAACCAGAGCTGCCGCAGCAGACTGGAGTCAAGATTCAGGTGGAATGTGGGAGGACCAGGAggcagaagaagaggaggaggaggaggatgatgaggaggatgaagGGCTGGCCGGGCAGCTGCTATCTGACCTCATCGCTTCCAACAAATATGATGAAGACTactatgaggatgatgatgaggaggatccAGATGCCTTGAAGGACCCCATATATCAGATAGACCTTCAGGCCTACCTGACAGATTTCCTGACCCAGTTTGCCCAGTCGCCGTGCTACAGCATGTTCTCTGGCCATCTCAATGACGCTGAGAGGAGAGTCCTGCAGACTATCGGCATCTAAACCTGCTCCCATCCACTTCCCTATGTCAACCCTACTAGAACACTCTTGCTCAATCCCTCACTCTCACCAACCAATCACCAACCCCTGAGTGTGGGAGAGGCTCTGATTGGCCAAGCAGTTGTTGATGCTTTACCTACATCTCCAACAGAAGATCATGGGGAGGTAAAgcgggagagaagagacagacatgaCTTACCCATAACATCCTGTCTTTCTATTCTGACTTAAAGGATGACCAGGAAAAGACTGCGGATTTGTGGAGGGATGTGACGGAAGAAGTTCGAGAGAAGGTTGTGAGGGACACCCTGATTTGTTCCCAGGGAGGGCTGGGAGACAGTTGTGGGAGACACCTCCTTAGTGTCTCCTCGCTCCTCTGCCCTGTTGTACTTGTGGGAGGACTTTGGAATGTGACAGAGGGGTTGATGTTTTGCAAtgggacaggcaggcagggcagcTGTGAAATATGAACGGAGTCTTTACTGTGTCCCATTTGTAACTCGACCCACTTATTTTTGtgcttctgtaaaaaaaaaaaaaaaaaaacttccaaGAGGCAAAAGAGACTTCATGACGATGGACAGACAAAGAGAAATATATCTTTGAGACTGAGTAAGAAACTTTGGTGGCCTTGTTTTCAGAAACCATTGACTTTTCTGATTGGGATGAAAACCTTGAGGATTTCTGGTTGCGACTGGGGCCTGGGTGGTTATGGGGGATTCACACCGTTGCCATGGTGACTCACCGCCTTTTCATTTCCCTTTACCCACTAGTTGGGGTGAAATTTCTCAATAAAAGTCCCAATAGGACACCA

Function

NR:

description
PREDICTED: importin-9

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K20224 IPO9, RANBP9; importin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950746.1 True 3992 mRNA 0.55 22 80947799 80978439

Neighbor

gene id symbol gene type direction distance location
LOC110494684 LOC107554191 coding upstream 10071 80892208 ~ 80937728 (+)
uba7 LOC106566065 coding upstream 272874 80603196 ~ 80674925 (+)
trnan-auu-4 NA coding upstream 449478 80498249 ~ 80498321 (+)
trnak-uuu-123 NA coding upstream 450487 80497240 ~ 80497312 (+)
trnak-uuu-122 NA coding upstream 452068 80495659 ~ 80495731 (+)
LOC110494685 LOC106566055 coding downstream 4811 80983250 ~ 80993527 (+)
lmod1b LOC106566054 coding downstream 19425 80997864 ~ 81004735 (+)
LOC110494687 LOC106566053 coding downstream 30018 81008457 ~ 81014990 (+)
LOC110494688 LOC106566052 coding downstream 39591 81018030 ~ 81042619 (+)
LOC110494691 LOC106566048 coding downstream 305647 81284086 ~ 81313260 (+)
G1494724 NA non-coding upstream 50479 80897081 ~ 80897320 (+)
G1494634 NA non-coding upstream 64118 80882464 ~ 80883681 (+)
G1494635 NA non-coding upstream 78534 80868198 ~ 80869265 (+)
G1494708 NA non-coding upstream 81923 80865657 ~ 80865876 (+)
G1494707 NA non-coding upstream 83888 80863632 ~ 80863911 (+)
G1494749 NA non-coding downstream 1171 80979610 ~ 80980512 (+)
G1494745 NA non-coding downstream 16002 80994441 ~ 80994876 (+)
G1494744 NA non-coding downstream 16617 80995056 ~ 80996466 (+)
G1494778 NA non-coding downstream 48149 81026588 ~ 81026979 (+)
G1494784 NA non-coding downstream 60376 81038815 ~ 81039760 (+)
tusc2 tusc2 other upstream 1562362 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1611727 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2172072 78770747 ~ 78775727 (+)
G1492003 NA other upstream 2694491 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2757509 78189012 ~ 78190290 (+)
G1495346 NA other downstream 315001 81293440 ~ 81293926 (+)
G1495362 NA other downstream 358578 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 453772 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 850293 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1184767 82163138 ~ 82169750 (+)

Expression


Co-expression Network