LOC110494685 (LOC106566055)


Basic Information

Item Value
gene id LOC110494685
gene name LOC106566055
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80983250 ~ 80993527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569972.2
GTGAACAGCGTCACATGCGATGTTATTCTATCCAGATTTTGTTGATCATTAACCTCATTCCTGACTGTCATATAATTCCGTAACTAGAGCATTATTATATAGATAATTATTTACAGCGGCGTATGGGGCGAAATAGCTGCTAAATCTGCCATTGGTTTCCGGAAAATTAGCAGTTGAACCATTTTGCATAGCATGTTTACAGTGGGCAAGATGTCCCTTATCGCTATGGCTCTGCCGGTGATCACCGTCCTTCTTTCCGCCTGGCAGGtgGGTGCCATTGATGACTGCTTGTGGTACGTGGATAAGAATGGCACTTGGCACAACGGGGTCCCCTGTCCCCTCATGACCTTCTGTTGTGGGAACTGCCACAAGCGCTACTGTTGCTTGGACGGCCTCAAGAGGATCACTGAGAGGGAGCAGAAGCGCTGCATGCTCTTCcagttcagccCTACCACCATCGCCAGCATGGCTTCGTCCATCCTGCTCTTCGTGGCTATCATTGCTACCATGGTGAGCTGCTTCATGTGCTCCTGCTGTTACCTCTACCAGCAGCGACAGCAGCGTGGCAGGACGCACTATGATGCCCAGCACATCCCTATGGCCACCTACCCCGTGGAGCCCATGTATGACGCTTACGGCAAGCCGCTGGTGATGGGACATCCAGATTATCCACACTCTGGTTACCCAATGGCATCTCAGTATCCTGGCATGCCACAGCCGTACCCCATGATGCACCCCGGCCCGTATCCCCCGTACCCCATGGCAGATTCTGGCTACCCTCAGGGAGCACCCCCTCCTTACTCCCCACCCCAGTACACCCCCCACCCCAGTCACTGATGGGATGATAACATGTACATGGTGGGAGATGAGAAAGACAAAGAAAGGACTGCATCAGAAAGAGAAGGCGACCACGAGACAACTCAGCTCTCCTAGTGGTTGTCCAGTGAAAGATAACCAGAGGCACTTTCCTTTATTTACTACATCCTTCAATGGAACAGAGCATGTGTTGAGTTGGGTTTTCCTGTCAGTCCTGACACTGAACTTGATTCCTACTGACAGTCTGGAAAATGTCACACCAAGTGAGGTAACCATCCTGCATCCATGCACTCACTCTCACATCCATCCAGAGGGTCCATTAGGGTAACCCATTCTATAAAGTCACACACTACCATTTGTTTGACATTAATTCTCTGTTTTAAGACGTTTGACTTGAGCAATGGTCAACATCTATTTTCACATGTTGGCTTGGCTTTAATCTGGTAGTGGACAGACAGAGGTCATACCTGCCTGCAGATAACACTGTGTGTGGGAGCTGATGGTAGATCCTATATGTTGTATAAAAGTCAGATTGCTCCTCTCGCTCTATCGGATCCCTTTAGCCAGCTCTTACTGCAGGTTCATATTCCGTGGGGATTTCTTTGCCCTCTCACGCTTAGCTTGTCTTTCCAAATAGAATATCATTAACTCTATTCATATTAGAGAGTCAGTTATACAGGTTCTGCAACGTCCCAATGTGTCTTCTTAATCAGTTGTCAGAAAGTTTATTTATTAGTGGCAGCTGTGTAAATGTTTTTCCTGTAATATATCAGGTCAATGTATATTTAATAACTTAAATAACAAATCTGAGCCTTATGTCATCGTGAATTCAAGATAAGCAATTTCAATACGTATTTTGTCAAACATATTTTATGTTCGAAGGTTTACATATTAACAAATAATTATCGTTTTAACATACTATCGCAACTTTTAAAAACATTGTACTGTTAAATGGTTTGAGCATTTTGTTTTACAGGTTATATTTCTGGTTATTACATTTCCCTCTGAGCCATCGTTGTGCCCCTTGTCCTACTGTGCAGCTCTAACATCACACATGACGTGTAGGGAATGTGTGGTACAGTTTACTATTACCAGCCAGTGAATGGCTCATCCAGGTCAAATGTGTTGGATAAGGTGACATTCTATTTTACCATCACTGAGATTCTTGATACATTTTTCCATTGAAAACACGAGTTGTTTGAAAGCACACTGAGAATCTTGGCATGAAAAAGGTGGAACAATTATGCAAAATATCTAGTGATTCTCCCTATTCAGCTACTGTTTATGTGTCAATGTATAACAATGACACACTATTGTAACTATGTCACAATTTGAATTACTTGATTACTTTATTTATTGTCAACATGTAAAGTAATATGCACAGCACAGTACATACTTGACTTTCTACTGGGTTTGCTGATGGGTTTGCTTTATGAATGCACTTATTTTATTGTGTACATTTAACATTTTTACCAGCGTGTAAATCTAATCTGTTACTAGTAGAACAGTTACCAGATGTTACTTGTTGGTGGTTTAATGGATGTTGTAAGTGCTGTTTTTTTTCTAATAACATAAATTATAACTTTAGAAT

Function

NR:

description
protein shisa-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569972.2 True 2407 mRNA 0.43 5 80983250 80993527

Neighbor

gene id symbol gene type direction distance location
LOC110493271 LOC106566056 coding upstream 4811 80947799 ~ 80978439 (+)
LOC110494684 LOC107554191 coding upstream 45522 80892208 ~ 80937728 (+)
uba7 LOC106566065 coding upstream 308325 80603196 ~ 80674925 (+)
trnan-auu-4 NA coding upstream 484929 80498249 ~ 80498321 (+)
trnak-uuu-123 NA coding upstream 485938 80497240 ~ 80497312 (+)
lmod1b LOC106566054 coding downstream 4337 80997864 ~ 81004735 (+)
LOC110494687 LOC106566053 coding downstream 14930 81008457 ~ 81014990 (+)
LOC110494688 LOC106566052 coding downstream 24503 81018030 ~ 81042619 (+)
LOC110494691 LOC106566048 coding downstream 290559 81284086 ~ 81313260 (+)
LOC110494692 LOC106566047 coding downstream 330040 81323567 ~ 81335099 (+)
G1494749 NA non-coding upstream 2738 80979610 ~ 80980512 (+)
G1494724 NA non-coding upstream 85930 80897081 ~ 80897320 (+)
G1494634 NA non-coding upstream 99569 80882464 ~ 80883681 (+)
G1494635 NA non-coding upstream 113985 80868198 ~ 80869265 (+)
G1494708 NA non-coding upstream 117374 80865657 ~ 80865876 (+)
G1494745 NA non-coding downstream 914 80994441 ~ 80994876 (+)
G1494744 NA non-coding downstream 1529 80995056 ~ 80996466 (+)
G1494778 NA non-coding downstream 33061 81026588 ~ 81026979 (+)
G1494784 NA non-coding downstream 45288 81038815 ~ 81039760 (+)
G1494769 NA non-coding downstream 52032 81045559 ~ 81045798 (+)
tusc2 tusc2 other upstream 1597813 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1647178 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2207523 78770747 ~ 78775727 (+)
G1492003 NA other upstream 2729942 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2792960 78189012 ~ 78190290 (+)
G1495346 NA other downstream 299913 81293440 ~ 81293926 (+)
G1495362 NA other downstream 343490 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 438684 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 835205 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1169679 82163138 ~ 82169750 (+)

Expression


Co-expression Network