LOC110494687 (LOC106566053)


Basic Information

Item Value
gene id LOC110494687
gene name LOC106566053
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81008457 ~ 81014990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569975.2
CGGTTGTTGTTGGCAGTTACATCAGGGGAAACAAGCACAAAGTCAAAAGTGGCTGTAtagtaaaacatttatttttggttttaatttaaggttagggttaggcataaggttagtagtgaggttaaggttagggttaaaatccCATTTTATGAAGAGAAATGGTAGAAATGGGCGGGGTTTGAGACTTTGATGCTTTGGTAACTAGTGACGATTGGCGGACCATTGAAATAACAAAATGGAGGAATACGCACGGGAGCCGTGTCCGTGGAGAATTGTGGATGACTGTGGAGGTGCTTTCACCATGGGGGCCATTGGAGGAGGGATCTTCCAGGCAGTCAAGGGCTTCAGAAATTCACCTTCAGGGATGAGCCACCGATTGAAAGGTAGCATGACTGCCATCAAAACCAGAGCCCCACAGTTGGGGGGTAGCTTTGCAGTATGGGGAGGACTCTTCTCCATGATTGACTGTGGGTTGGTAAAGGTAAGGGAGAAAGAGGACCCCTGGAACTCCATCACAAGCGGGGCCATGACTGGAGCTATCCTCGCAGCAAGAAATGGACCTGTGGCAATGGTGGGCTCTGCAGCAATGGGAGGTATACTGTTGGCGTTGATAGAGGGTGCTGGGATCCTGCTTACTAGATTTGCTTCATCACAGTTCCCAACTGGTCCCCAGTTTGCTGAGGAGCCAGCCCCCATGCCTGCCCCTTCCTTTGGAGGAGACTACAGACAGTACCAGTGAGAGGTCTCAGTCTCTAGGCCTTTTTGAATTCCTTGCTGAAGTTACACTGGGGAAATGGAGGACAAATACTACACAATAGGCAATTGCACCTAACATTATGGACTGGGTCAGAACTAAAGGGCAAATTCACACTTTCTTCCCCCGGAGCCATGTACAGATTTGCCTTTCACCATCCTCCGTCTTGACAGTTGTGCGTAGTTCACCCTACATTGGTTAAAATATCTGAACTGGAGACGAGGGAAAAGTTTGGTTTGTACAATCTTACATGCATGTAATACCCTACCCTGCAAGTGTGCCAGACACTGGAGCTGATGTTGAGCCAAGGGCACTGCCATGGCTATGTCAATATCAACTCAAAGATGGACCCTTCCAAACTTGTATAATGTTTTtcgtatgtgtgtatatataggctTTCCTGCATGCATTtgatatgttttgtttatttgccTTGTTGTTCATCATATCCTGTGCTTGTGCTCGCCATTTTGTAAATTTAAAATGTAAGTGGGCATTTTATGAATTGCTTTTATTGAATGGTATAAAAGGCAATCAATTCATTATGCTGTTCCTGAAATCTTAGGTTTTATAgtgacttttttgttgttgtagttgataATTATATGCTTTTATAAATTTACACCAAGAGGCACAAATTACTGCTGGCAAATGATGTTTGAGACAGAAGGATGATGAACAGGACAAACCTCACTAGTTACTCAATGCAAGGGGTTGATGCAACGTATCTGTATGACAGATTGAATTACACAAGAATAAAATTggtaaaatacaa
>XM_021569976.2
tggttaaagcgttggcccagtaactgaaaggttgctggattgaatccccgagctgacaagTCCGTGGAGAATTGTGGATGACTGTGGAGGTGCTTTCACCATGGGGGCCATTGGAGGAGGGATCTTCCAGGCAGTCAAGGGCTTCAGAAATTCACCTTCAGGGATGAGCCACCGATTGAAAGGTAGCATGACTGCCATCAAAACCAGAGCCCCACAGTTGGGGGGTAGCTTTGCAGTATGGGGAGGACTCTTCTCCATGATTGACTGTGGGTTGGTAAAGGTAAGGGAGAAAGAGGACCCCTGGAACTCCATCACAAGCGGGGCCATGACTGGAGCTATCCTCGCAGCAAGAAATGGACCTGTGGCAATGGTGGGCTCTGCAGCAATGGGAGGTATACTGTTGGCGTTGATAGAGGGTGCTGGGATCCTGCTTACTAGATTTGCTTCATCACAGTTCCCAACTGGTCCCCAGTTTGCTGAGGAGCCAGCCCCCATGCCTGCCCCTTCCTTTGGAGGAGACTACAGACAGTACCAGTGAGAGGTCTCAGTCTCTAGGCCTTTTTGAATTCCTTGCTGAAGTTACACTGGGGAAATGGAGGACAAATACTACACAATAGGCAATTGCACCTAACATTATGGACTGGGTCAGAACTAAAGGGCAAATTCACACTTTCTTCCCCCGGAGCCATGTACAGATTTGCCTTTCACCATCCTCCGTCTTGACAGTTGTGCGTAGTTCACCCTACATTGGTTAAAATATCTGAACTGGAGACGAGGGAAAAGTTTGGTTTGTACAATCTTACATGCATGTAATACCCTACCCTGCAAGTGTGCCAGACACTGGAGCTGATGTTGAGCCAAGGGCACTGCCATGGCTATGTCAATATCAACTCAAAGATGGACCCTTCCAAACTTGTATAATGTTTTtcgtatgtgtgtatatataggctTTCCTGCATGCATTtgatatgttttgtttatttgccTTGTTGTTCATCATATCCTGTGCTTGTGCTCGCCATTTTGTAAATTTAAAATGTAAGTGGGCATTTTATGAATTGCTTTTATTGAATGGTATAAAAGGCAATCAATTCATTATGCTGTTCCTGAAATCTTAGGTTTTATAgtgacttttttgttgttgtagttgataATTATATGCTTTTATAAATTTACACCAAGAGGCACAAATTACTGCTGGCAAATGATGTTTGAGACAGAAGGATGATGAACAGGACAAACCTCACTAGTTACTCAATGCAAGGGGTTGATGCAACGTATCTGTATGACAGATTGAATTACACAAGAATAAAATTggtaaaatacaa

Function

NR:

description
Mitochondrial import inner membrane translocase subunit Tim17-A

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569975.2 False 1529 mRNA 0.44 6 81008457 81014990
XM_021569976.2 True 1328 mRNA 0.45 6 81009541 81014990

Neighbor

gene id symbol gene type direction distance location
lmod1b LOC106566054 coding upstream 3722 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 14930 80983250 ~ 80993527 (+)
LOC110493271 LOC106566056 coding upstream 30018 80947799 ~ 80978439 (+)
LOC110494684 LOC107554191 coding upstream 70729 80892208 ~ 80937728 (+)
uba7 LOC106566065 coding upstream 333532 80603196 ~ 80674925 (+)
LOC110494688 LOC106566052 coding downstream 3040 81018030 ~ 81042619 (+)
LOC110494691 LOC106566048 coding downstream 269096 81284086 ~ 81313260 (+)
LOC110494692 LOC106566047 coding downstream 308577 81323567 ~ 81335099 (+)
LOC110494694 LOC106566046 coding downstream 359543 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 377712 81392702 ~ 81393600 (+)
G1494744 NA non-coding upstream 11991 80995056 ~ 80996466 (+)
G1494745 NA non-coding upstream 13581 80994441 ~ 80994876 (+)
G1494749 NA non-coding upstream 27945 80979610 ~ 80980512 (+)
G1494724 NA non-coding upstream 111137 80897081 ~ 80897320 (+)
G1494634 NA non-coding upstream 124776 80882464 ~ 80883681 (+)
G1494778 NA non-coding downstream 11598 81026588 ~ 81026979 (+)
G1494784 NA non-coding downstream 23825 81038815 ~ 81039760 (+)
G1494769 NA non-coding downstream 30569 81045559 ~ 81045798 (+)
G1494792 NA non-coding downstream 40216 81055206 ~ 81055428 (+)
G1494793 NA non-coding downstream 40990 81055980 ~ 81056188 (+)
tusc2 tusc2 other upstream 1623020 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1672385 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2232730 78770747 ~ 78775727 (+)
G1492003 NA other upstream 2755149 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2818167 78189012 ~ 78190290 (+)
G1495346 NA other downstream 278450 81293440 ~ 81293926 (+)
G1495362 NA other downstream 322027 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 417221 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 813742 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1148216 82163138 ~ 82169750 (+)

Expression


Co-expression Network