LOC110494688 (LOC106566052)


Basic Information

Item Value
gene id LOC110494688
gene name LOC106566052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81018030 ~ 81042619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569977.2
AAGATAAATAGTTAGGAAGGACGTCTCCTGCGCACGGGGCCGGACCGGGGATATCAGAGACGCAAAAGAAGCGAGACATCCCACTTTCTCATTTATTGTTTCAATGACCCAAGTAAACGTTGGTTTCTATGGAAGAGACACCCCTTTAAGTAGACAGGAACTGACACATTTTTTCCTATGGTAAATGGCCTGAGTGAGCCATCTTCATTTATCCAACGTCTTTGGATATACACAGACTGGCGGAGTGGAGCGAGAAACGACTGTTGGGCTGTCCCGTGAAGAGATCCCGCCATGCGTGAATACAAGCTAGTGGTGCTAGGCTCGGGAGGCGTGGGCAAGTCCGCTCTGACAGTCCAGTTTGTGCAGGGAATCTTTGTGGAAAAGTATGACCCAACAATAGAAGACTCCTACAGAAAGCAAGTGGAGGTAGATGGACAGCAGTGCATGCTTGAAATCCTTGACACAGCCGGCACAGAGCAGTTCACTGCCATGAGAGATCTGTACATGAAGAACGGTCAGGGCTTTGCCCTGGTATACTCCATCACAGCACAGTCCACGTTCAACGACCTGCAGGACCTGAGGGAACAGATCTTGAGAGTCAAGGACACTGAAGATgtgCCTATGATCCTGGTGGGTAATAAGTGTGACCTGGAGGATGAGCGGGTGGGCAAGGAGCAGGGTCAGAACCTGGCCAGACAGTGGAACCACTGTGCCTTTTTAGAGTCCTCCGCAAAGTCAAAGATCAACGTCCTCGACATCTTCTACGACTTGGTCAGACAGATAAATAGTAAAACGCCTGTGGAAAAGAAGAAAGCGAAAAAGAAATCAAACTGTGTCCTGCTCTAAATGTCCCTCCACCCTGCAGCAGCTCTGAGCCAGAATGCTGTAATGAAGAACTGTTGCCCTGATTGGACCGTGCCAGCATTCTGACAGCCCCGCCTCCCCCATCAGCCATAAACGGTGACGACACAAACAGCCGCCTGCTGATTCGCTAGTATCAAGATATCAAGGCAGGACACAAGGAGAGAGAAGACTGGTGTCTATCTCACTCAGACTTCTCTGATCTGACATCAGTGAGCCTTGAAGGACAATCTTCATTTCCCACATGGTGAACCACCATAAACTCTCTGAAAGTCTCTGAAATGGAAATGTCAATGGTCTGGCCAACCGAGAGCCCCCTCCTCCTTTTTTGAGAGTTTTAAAAACGATTACCTACGAAGGGAAAAAAGACTTCAGTATTTTACATCTTTGCAATATATCGTATTTGAAGACATGGAAGTTGACTTTAGTTGTGTGATTATAAATATCTGCAGACAGTGTGATCACATCTGGTATTAAGTGCAGTAAGAACGTTCAAGTGGAAGTAACAACTTTTGTATAGCCATACACACATTTCCTCGTGCCAGTCATGTCAATGGTGGACCATATGTTTTTTGGTTTCTCTTAACTCCATGGACTTTCTCTTCTGCAAATATCTCTGTGACTTAATTTTATACTCAGTCACTGGGATTTCATAGTTCCCGTAATATATTCTAATGACATTTTTGCATAATAATGCTTGAGAAAAGGTATTTTATAGAAGAAAtatggggggggggttgatttcTGTCTCTTGAAGCTGAAATATATACTAAACCAACTTTAATAATGCTTCTTGTGTTTTTGTCAAATGATGTTCCAGCTTTTATGGATTATTAAATTTAGTACATTATAA

Function

NR:

description
PREDICTED: ras-related protein Rap-1A-like

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569977.2 True 1714 mRNA 0.44 9 81018030 81042619

Neighbor

gene id symbol gene type direction distance location
LOC110494687 LOC106566053 coding upstream 3040 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 13295 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 24503 80983250 ~ 80993527 (+)
LOC110493271 LOC106566056 coding upstream 39591 80947799 ~ 80978439 (+)
LOC110494684 LOC107554191 coding upstream 80302 80892208 ~ 80937728 (+)
LOC110494691 LOC106566048 coding downstream 241467 81284086 ~ 81313260 (+)
LOC110494692 LOC106566047 coding downstream 280948 81323567 ~ 81335099 (+)
LOC110494694 LOC106566046 coding downstream 331914 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 350083 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 389569 81432188 ~ 81602161 (+)
G1494744 NA non-coding upstream 21564 80995056 ~ 80996466 (+)
G1494745 NA non-coding upstream 23154 80994441 ~ 80994876 (+)
G1494749 NA non-coding upstream 37518 80979610 ~ 80980512 (+)
G1494724 NA non-coding upstream 120710 80897081 ~ 80897320 (+)
G1494634 NA non-coding upstream 134349 80882464 ~ 80883681 (+)
G1494769 NA non-coding downstream 2940 81045559 ~ 81045798 (+)
G1494792 NA non-coding downstream 12587 81055206 ~ 81055428 (+)
G1494793 NA non-coding downstream 13361 81055980 ~ 81056188 (+)
G1494794 NA non-coding downstream 15048 81057667 ~ 81057896 (+)
G1494800 NA non-coding downstream 20526 81063145 ~ 81063384 (+)
tusc2 tusc2 other upstream 1632593 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1681958 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2242303 78770747 ~ 78775727 (+)
G1492003 NA other upstream 2764722 78252629 ~ 78253308 (+)
G1491963 NA other upstream 2827740 78189012 ~ 78190290 (+)
G1495346 NA other downstream 250821 81293440 ~ 81293926 (+)
G1495362 NA other downstream 294398 81337017 ~ 81338163 (+)
LOC110494698 LOC106566043 other downstream 786113 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 1120587 82163138 ~ 82169750 (+)

Expression


Co-expression Network