LOC110494691 (LOC106566048)


Basic Information

Item Value
gene id LOC110494691
gene name LOC106566048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81284086 ~ 81313260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569985.2
TAGGTCAACAATCTGAATTCGGCCTTGCCTATAGGCTGACGGATATGTCACATATGAGTTCTTCCGCTATCGACAGCTGAAGACGCAAGACAATCTTTGACAATTGTTAAAGTTCATGTTGGCGTTTACAAAGGCATTGAAGAGACATAGAAGGAGTCCCAGATGAACATGGAGAGCCTGAGCAAGCCAGAGCTGCTAATGCTGTTCAGTGTCCTGGAAGGAGAGCTGGAAGCCCGTGACCTGGTCATTGAGGCCCTCAGGGCCCAGCACAGAGACACCTACGTGGAAGAGCGCTATGGGAAGTACAACCTGAGCGACCCGTTCCTGGCTCTGCAGAGGGACAGCAATGCCTTGGGAGTGCAGAGGTCTGGGTTCCACCAGGCTGCAGCATGCTTCAGCCCCCTCGCTGTACTCAAGCTGGTGGTCACCCACTGCAGGAAGATGCAGGAGAAGATTCTGGCCCAACTAGCTGCAGCTGAGAGCAGACAGAGGAAGGCCATTGCAGatctggaggaagagaggagaaggcatGCAGAGGACACAGCCGAGGGCGATGATGTCACTTGCATCCTGGAAAAGGAGAGGGAACGCCTCTTGCAACAGCTGGAGTTTGAGCGAGGCCAGTTGTGTCGTCTGGAGAAGGAACAGAAGAAGGTCCTGGAGCAGCTGGAGGAGGAGCGGGTGCAGCACAAGCAGCTCTCCTCTGCCCTGGCCAAGGAGTGCAAGTGGGCCAGCCAGCGGGCCCTGGAGGAGGGCCACCGCCTGGCTGAGGCAGGCCGTAGGCTGGAGAAGGAGCAGGGGGAAGTCCTTGCCCTGAGGGCTGagctgcaggaggagaggaggagggccctgCAGATGGAGGCCAGGGTGGAGGAGCAGCTGGCTGAGTTCGATACGGAGAGGGAGCAGCTCCGCTCCCGGCTCAAGAAAGAGGAGGCCCAGTACTGCCAGCTGCAGGAGCAGGTGGAGGCCCTGAAGAGAGagctgcagggagagaggggagatgaggaggagaggagagaatatcCTGTGGACCCACAACCCAGCCAGGCAGAAGGGGGCGAGACTGAGGAACCTAAAGTCAACGGGCACCATGACTGCCCCACGGAGGAGCAGGTGCCATCCCTTCCATACGGATTGGGCCAGGACAACTGGAGTGAGAACAGCAGCTCTGTTCTTGGGTCCCCTGCCCTCCTTACCAAAATTATATCCCTCTGCAGCACAGGGACCTCCTCTGTCACCTCCTCCCCATGCTCCTCTCCTCAGCTGGCCACCAGCCCCAGCTACCAGTCCTCCTACCAGGTAGGCATCAACCATCGCTTCCATGCTGCTCGCCACAAGTTTCAGGGCCACACTGACCcagagcagcaacagcagcagcagggtggaggagggggtggtaGCCTGCCTCACTCCCCCAGAGACCTGTCCCCAACCCCTAGCCCATCCCCTGAGcccgtctctgtccctgtccacaGCCCGGCCAAGCAGCTGGCCCGCAGCACCGTCACCCAGGTCCTGTCCCGCTTCACAGTCCAGCAGGGGGCCAAACCTCCGCCACCCAACAGTTCTCCCTTTGGCACTGACTACCGTAACCTGTCCCCCTCCTCCCCGGTAATCCCCAGGGCCTCTGGTGCTGCTCTGCCTCTGGGGGTCCGCTCACCTACCATTCCCCGAGCAGAGAGGGGCAACCCGCCCCCCATCCCCCCTAAGAAGCCTGCCCTGGCCCAGTCTCCAGCGTCGCCCATCCCTGGTACCAGAGCCAACCACTTCCCTGAGCTGTCTGGAAGCTGTGGTCTCACCAGGTGCCAGGAGAATGTTAAAGAGCTGGATATGGTGGTGTCCTCCACCAGCTAGTCTAGCCTGCTACTGGGTGCTACTAGCGCTGTGTTCTCTTATACTGCTCACATGTTTGTATGCAGAGAGATGCTCCAAAGCACTGTCAAGTTAACTTTATTGGAATTTTTTGGTCTGTTTCATTCTACTATAGCACTATACACCTAGTTggaaaaacattaggaacaccttcctaatattgagttgcaccctcttttagccctcagaacagtctcaatttgttgggacatggactctacaaggtgcagaaagcgttccacagggatgc

Function

NR:

description
CTTNBP2 N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569985.2 True 2125 mRNA 0.58 5 81284086 81313260

Neighbor

gene id symbol gene type direction distance location
LOC110494688 LOC106566052 coding upstream 241467 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 269096 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 279351 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 290559 80983250 ~ 80993527 (+)
LOC110493271 LOC106566056 coding upstream 305647 80947799 ~ 80978439 (+)
LOC110494692 LOC106566047 coding downstream 10307 81323567 ~ 81335099 (+)
LOC110494694 LOC106566046 coding downstream 61273 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 79442 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 118928 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 515311 81828571 ~ 81847540 (+)
G1495181 NA non-coding upstream 82989 81200888 ~ 81201097 (+)
G1495174 NA non-coding upstream 93973 81189885 ~ 81190113 (+)
G1495169 NA non-coding upstream 106497 81177365 ~ 81177589 (+)
G1495164 NA non-coding upstream 113142 81170520 ~ 81170944 (+)
G1495161 NA non-coding upstream 120385 81163483 ~ 81163701 (+)
G1495338 NA non-coding downstream 2272 81315532 ~ 81316750 (+)
G1495359 NA non-coding downstream 6553 81319813 ~ 81320091 (+)
G1495363 NA non-coding downstream 21935 81335195 ~ 81336268 (+)
G1495372 NA non-coding downstream 28867 81342127 ~ 81344561 (+)
G1495408 LOC106586415 non-coding downstream 111218 81424478 ~ 81424709 (+)
tusc2 tusc2 other upstream 1898649 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1948014 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2508359 78770747 ~ 78775727 (+)
G1492003 NA other upstream 3030778 78252629 ~ 78253308 (+)
G1491963 NA other upstream 3093796 78189012 ~ 78190290 (+)
G1495362 NA other downstream 23757 81337017 ~ 81338163 (+)
G1496351 LOC106566032 other downstream 849946 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2301005 83614265 ~ 83634495 (+)

Expression


Co-expression Network