LOC110494692 (LOC106566047)


Basic Information

Item Value
gene id LOC110494692
gene name LOC106566047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81323567 ~ 81335099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569986.2
TTTCCTGCGGCGCATCTTCAGTCCGGACTGAGAAGAAGACCGCGGCGTAGCTATCTGTCTCATCCTCGGACAGATGAGTGACTGACTTTACCTGCCCGGGACAAGCAGTGGTTTCAGTGCCATCTTTTTTCACAGTCTGTGATACCCGTGTTTGGGTTTGCAACTTCTTCAGCTTCACCTGTTATTCACGTCGAATGTCAAACAAATAGCCTGGGCTACAAAAACAATACGCAACAACGAGGGAAAGTGTTATCGTTGGCAACCCGAACATCTGGCTGGACATTTGACAGTTTCTCAGAAGATTTGTCTTAATTCGATTTACTTTTACCAGACTGACTTTTGATGAGCACTGCCTCGTCTCGAATAAATCAGAGACAAACAATGGCATTGATGAACTGACAAGATATCAAATTAGCCTTTTGAAACAAGATGGATAAAATTGTTCAACTTCTATAGATAGGCAGGTTTTCCCCCAATTATGAACAGCAAACCATCGCCCAGGACTTGTATTCTTCATTTTATATTGTATGCCTTCTGTTCATGAAAATAGACATGTTTTGTTTCTTCAAACCCCGAGGATATTCCAGGACCAGGACTGGGTCTCGAAATGGGACAATATCCCGACACTCCTCCAACTCAACCTCAAAGCTATACTTCACCTTTATTCTGCTGCTTCTCATCTTCACGCCTAGAGTGGATTCTTCCTGGTGGTACATTGGAGCCCTGGGTGCACGGGTGATCTGTGACAACATTCCAGGCCTGGTGAACaagcagcgccagctgtgccagcGCCACCCGGACCTCATGCAGTCTATTGGGGAGGGTGCCAAGGAGTGGATCCGCGAGTGCCAGCACCAGTTCCGCCACCATCGCTGGAACTGCAGCACGTTGGACCGAGACCACACCGTCTTTGGCAGAGTCATGCTGCGCAGTAGCCGGGAGGCAGCATTTGTGTACGCCATCTCCTCGGCAGGCGTGGTCTATGCAATTACCAGGGCCTGCAGCCAGGGGGACCTCAAGATCTGCAGCTGCGACGCCCAAAAGCGGGGCCAGGCTAGTGACAACAGGGGCGAATTTGACTGGGGCGGCTGCAGCGACAACATCAACTATGGCATCAAGTTCACCAAGACCTTTGTTGATGCCAGAGAAAAGATGGTGAAGGACGCTCGGGCACTGATGAATCTACACAACAACCGCTGTGGACGAATGGCAGTAAAGCGCTTTATGAAACTGGAGTGCAAGTGTCATGGCGTCAGCGGCTCCTGTGCCCTCAGAACCTGCTGGCTGGCCATGTCGGACTTCCGGAGGACCGGGGACTACCTCCGGAAGAAGTACAACACGGCCATCGAGGTGACCATGAACCAGGATGGCACCGGGTTCATGGTGGCTGACAAGGACTTCAAGGGAACCACCAAGAATGAGCTGGTGTATGTAGAAAAGTCCCCTGACTACTGCCTCATGGACAGAGCAGCAGGCTCCCTGGGAACGGCAGGGAGAGTCTGCAACAAGTCTTCTAGAGGCACAGACAGCTGCGAGGTCATGTGTTGCGGACGGGGCTACGACACAATGCGCGCCAAGCGAGTCACCAAGTGCGAGTGCAAGTTCAAGTGGTGTTGCGCCGTGGAGTGTAAGGACTGTGAGAACACTGTGGACGTTCACACCTGTAAGCCCCACAGGCGACCCGATTGGCTGGACCAAACCAGACGCTGAGGCCCATTCTTTAAAAGGACGTAGCAGTGGTCAGCTGCATTGTGGGATATGTATTTCCTACCCCTGACTCCTTACGGACTCCTTTCGGACCTCCATTACCTCTGACAACCCCTTCTAAAGTGACATCCTAAAGAACCTTTCCCAAAGCGTCGTATCCCAACTTGGTTTGGATGGTGCAGTACTGTATGGAACTTTTCGGTGGGAAGGCTTTCTAAGAGAATGGTTGGGCTGGGAGAGGGGATAGTTcctatttatgtttttgtttgtttgtgttgattGTGTGCTGCTTCCAAGGTGCTGAGGACACTATTTTTCTACAGACATTCATTCACACAGTATCTGTTGTGGAAATGCAGAACAGGACATTGTACTGTGAGCACACCAGAGATTGAGTTAGGATTGTTTGGCTGgtgtatgtgttgttgtttttttgctttgTTTAAGACTATGTTCTCTCTAAATCTGTGATTACTTTGTTCAGTGTTTCATTGGCCTTACAATAGAAAGAGATGAAGAACTGAAATTGTACTCTGCTTGATATAATGGAAAGACTGACATGTATTCAGTTGTTaggcttaaaaaaatatatttaaaaaaggaGGACTTACCCTCATGCCTTACCCTACTGGTAAAGTGCATTGGGATGGATGTACAGCAGAAAGTCTAACGATCAACGTTTACCGCGGGCCAGAGAGCTGCTCTATAGACACTAatgtaaagtaccagtcaaaacatttagacacacctcctcattgaatgttttttctttatttttactattttctacattgtagaataatagtgaagacatcttaactatgaaataacacata

Function

NR:

description
protein Wnt-2b-A-like

GO: NA

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569986.2 True 2543 mRNA 0.48 5 81323567 81335099

Neighbor

gene id symbol gene type direction distance location
LOC110494691 LOC106566048 coding upstream 10307 81284086 ~ 81313260 (+)
LOC110494688 LOC106566052 coding upstream 280948 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 308577 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 318832 80997864 ~ 81004735 (+)
LOC110494685 LOC106566055 coding upstream 330040 80983250 ~ 80993527 (+)
LOC110494694 LOC106566046 coding downstream 39434 81374533 ~ 81380787 (+)
LOC118940108 NA coding downstream 57603 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 97089 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 493472 81828571 ~ 81847540 (+)
LOC118940109 NA coding downstream 526452 81861551 ~ 81862479 (+)
G1495359 NA non-coding upstream 3476 81319813 ~ 81320091 (+)
G1495338 NA non-coding upstream 6817 81315532 ~ 81316750 (+)
G1495356 NA non-coding upstream 15401 81307878 ~ 81308166 (+)
G1495355 NA non-coding upstream 15735 81307564 ~ 81307832 (+)
G1495350 LOC100380853 non-coding upstream 26503 81296622 ~ 81297064 (+)
G1495363 NA non-coding downstream 96 81335195 ~ 81336268 (+)
G1495372 NA non-coding downstream 7028 81342127 ~ 81344561 (+)
G1495408 LOC106586415 non-coding downstream 89379 81424478 ~ 81424709 (+)
G1495409 NA non-coding downstream 89946 81425045 ~ 81425329 (+)
G1495456 NA non-coding downstream 158853 81493952 ~ 81494430 (+)
G1495346 NA other upstream 29641 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 1938130 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 1987495 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2547840 78770747 ~ 78775727 (+)
G1492003 NA other upstream 3070259 78252629 ~ 78253308 (+)
G1495362 NA other downstream 1918 81337017 ~ 81338163 (+)
G1496351 LOC106566032 other downstream 828107 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2279166 83614265 ~ 83634495 (+)

Expression


Co-expression Network