LOC110494694 (LOC106566046)


Basic Information

Item Value
gene id LOC110494694
gene name LOC106566046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81374533 ~ 81380787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569988.2
AGAGGTATCATGTGCCAGTGGCACTGTCAAGATCCGCTTCCTCACCGTCCGCTGCAGTCAGTCGCGGATCAGAAGAGGTTTGTCTCATGAGCCAAGATGGCCGATTTCGAAGAACAGCTCACTGAGGAAGAGAAGGTGCGCATTGCGGCTAATTTTGTCGTCCATGCTCCACCTGGAGAATTCAATGAAGTCTTCAATGATGTGCGGCTACTGCTCAACAATGACAATCTTCTCAGGGAGGGTGCAGCACATGCCTTTGCCCAGTACAACATGGATCAGTTCACCCTTGCCAAACTTGAAGGGTATGATGATCAGGTGCTGATCACAGAGCATGGAGACCTGGGCAATGGCCGTTTCTTTGACCCCCGCAACAAGCGGTCATTCAAATTTGACCACCTGAGGAAGGAGGCCAGTGACCCCCAGCCCCACGAGGGAGAGGCAGCTCTCAGACCCTGGAGAGACGCGTGTGACAGCGCTCTGAGGGCCTACGTCAAGGAGCACTACCCCAGCGGCGTCTGCACTGTTTATGGGAAAACTATTGACGGCCAGCAAACCATAATTGCTTGCATTGAAGGTCATCAATTTCAACCAAAGAACTTCTGGAATGGTCGTTGTCGGTCTGAATGGAAGTTCAGCATCTCCCAATCTACAGCTCAAGTCGTTGGGGTCCTCAAAATACAGGTGCATTACTACGAGGATGGAAATGTGCAGCTGGTCAGCCACAAGGAAGTACAGGAATCCCTCACTGTAAATAGTGAGACTCAGACTGCAAAGGAGTTTGTGAAAATCATTGAGGATGCAGAAAATGAATACCAGACGGCCATCAGTGAGAACTACCAGACCATGTCTGACACCACATTCAAAGCCTTGCGCCGGCAGCTTCCTGTCACCCGCACCAAGATTGACTGGAACAAGATCCTCAGCTACAAGATTGGCAAGGAGATGCAGAATGCTTAGAGGACAGTGTGTCGGTcattgttactgtgttactgcaaAGACAGAGAGGGTAGGGGAAAAGAGGCAtcaaagggggaaaaaaatgatACTCTATTCTGTCTTTGTTAAAGAATGCCACGGTTTGATTTGGTGTATGGAGTTGGTATGCTTTCTTCAGGCGCATTAGGAGGGATGGCTTCATTTTAAGAGGACATTTTGGATTGTTTAGCTCTCGCTCATTTGCAAATTTTTCATTTGAACAAAATGCCTTTAGTGACACTGAAAGTTTGGATTACATGGGTCAACCTCGCTCTCACACACCGATGCTTCAAAAATCTGAGTCATATCCTCATACCCCTCATTTGGTTGACTTTGTGTCTGGGGGCCACATCTGTTTAAGCCCATTTCGTAACCCACTATGGCCGGGATTCAAACAAATGCAGATAAACGACCGGTGCATTGTGGTTCATCTTTAAAGGCGATTTCTGACTCCGCTGCCATCCGCTGCGTGATGTCTTGGAAATTGCCTTTAAAAGCCTATCGCTGTGCGCAGGTCATTGGATTGAATCATGACCTATATTTTAGATTGGCCAAGACCTATATATCTGTAACCCAAGAGCTCCTCCAAGTGAGGTGTATACTCCTAAGTGACTACATTTAGTACACCCCCTTAAAAAAGTCCCAAGTATCAGCTCTGTACCCTGCAAGCTTTCCCGTTGGAAAGAGATGTACTTGTACAAAGGTTTAATCAGGCCTAAACAAGCAGAGCACCATCAGTATCCACTATCAGTGATTCGGCCaacttaatatataatatacctatattCCTCCTTACCGCCCACATGCCTTCCTTTAGCTTTTtgctatatttttttatacaaaatGTAAGAACATGTATAATTCAAAGGAATAAAGAAGTTGCACCAAATACTATGCTGTAACTATTGTCATCATTAACCATAAATAGCGTTTTACTTACCAGTATGTAGAAATATGCTGATTGGGAAATAATCTGATTTGGTGCcaaatgtgtatttgtgtgtaaaaA

Function

NR:

description
F-actin-capping protein subunit alpha-1

GO: NA

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569988.2 True 1984 mRNA 0.45 10 81374533 81380787

Neighbor

gene id symbol gene type direction distance location
LOC110494692 LOC106566047 coding upstream 39434 81323567 ~ 81335099 (+)
LOC110494691 LOC106566048 coding upstream 61273 81284086 ~ 81313260 (+)
LOC110494688 LOC106566052 coding upstream 331914 81018030 ~ 81042619 (+)
LOC110494687 LOC106566053 coding upstream 359543 81008457 ~ 81014990 (+)
lmod1b LOC106566054 coding upstream 369798 80997864 ~ 81004735 (+)
LOC118940108 NA coding downstream 11915 81392702 ~ 81393600 (+)
LOC110494696 LOC106582736 coding downstream 51401 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 coding downstream 447784 81828571 ~ 81847540 (+)
LOC118940109 NA coding downstream 480764 81861551 ~ 81862479 (+)
LOC110494700 tshb coding downstream 509770 81890557 ~ 81892633 (+)
G1495372 NA non-coding upstream 29972 81342127 ~ 81344561 (+)
G1495363 NA non-coding upstream 38265 81335195 ~ 81336268 (+)
G1495359 NA non-coding upstream 54442 81319813 ~ 81320091 (+)
G1495338 NA non-coding upstream 57783 81315532 ~ 81316750 (+)
G1495356 NA non-coding upstream 66367 81307878 ~ 81308166 (+)
G1495408 LOC106586415 non-coding downstream 43691 81424478 ~ 81424709 (+)
G1495409 NA non-coding downstream 44258 81425045 ~ 81425329 (+)
G1495456 NA non-coding downstream 113165 81493952 ~ 81494430 (+)
G1495417 NA non-coding downstream 221785 81602572 ~ 81603171 (+)
G1495707 NA non-coding downstream 224231 81605018 ~ 81605225 (+)
G1495362 NA other upstream 36370 81337017 ~ 81338163 (+)
G1495346 NA other upstream 80607 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 1989096 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 2038461 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2598806 78770747 ~ 78775727 (+)
G1496351 LOC106566032 other downstream 782419 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2233478 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 2499145 83879805 ~ 83890067 (+)

Expression


Co-expression Network