LOC110494696 (LOC106582736)


Basic Information

Item Value
gene id LOC110494696
gene name LOC106582736
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81432188 ~ 81602161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569989.2
GCGTGTCCTCCTCTGCCTGCCGTTGCTAACGCTCCGGAGTGGACCCCTCATCTCAAATGCGTCGTCTGGACCGTGAAGAGACATAGTCTACACACAACACATGAACGAAACAATACTGGATGAACTGCAATAAGAACAATCTGTTCTGTAGAAACAATGATTGACTATCAGTCGTTGCTTTCAAGCTCTCTTGCTTTTGCGGTTGGGAAGTTGTGAAAAAACGCTAAAGGACCAGGAACTTTAGAAGACTTCAGAGTTGCTATATATGCAGTCGACCGATTAATCCGGGAGCCCGGTCGAGTTTGAAAGTCTATGCAATAGGCTACATTTTCTTTTGACATCTTTTGACTCAGGGATTTGGCGTTTTGAAAGCTTGATGTCTACACATTTTTCCTAGGTTATGTTTTGTCGTGGTGGGCACATTCACGGGCTAAAGGAAATTGTATTTCTTTAACATTaccctgtttttgtttttgaaaATGGAGAGCAAATGAGAGGGGCATTTCCCGGGATTAATTGACAGCACAACGACAGAATGCGGGAGAGAGACCTACGGAGTGTGTGCAGAAGGGTGCTTCTGTTGGCcgtctgtctggtgtctctctgggGACAGCTGACCCTCGCTTCGTCACACAGAAGTCACATAGtgcatgtcaaagcaggGACCTGTGAAGTGACCGCCGCCCACCGCTGCTGCAACAAGAACAAGATCGAAGAGAGATCCCAGACGGTGAAATGTTCCTGCTTCCCCGGACAGGTTGCCGGGACAACAAGAGCGGCCCCATCTTGTGTGGACGCTTCCATAGTTGCCCAGAAGTGGTGGTGTCAGATGCATCCATGTATGGATGGGGAGGAGTGTAAAGTTTTGCCTGATCTGAAAGGCTGGAGCTGCAGTACGGGAAACAAAGTGAAGACGACGAAGGTCACGCGATAGTGCTGTCTGTCCTGGATCTGAAGACTTGGTGTCATCAGTCATTTCTTCCTTGACAGAAACCACTGGGTCTTCTTGGATGTGAGAACTATGTATTGAATGATTTTGGGAAGGAACCAGGGACCAGTAAGGCAACATGGAAAACTCCTGAAATTCTACTGAACGGATGCAGAGCAGAGACTTGACCTGGAAATAGCATAGAACCACCTATCCAGACAACTGGACTACTGATTACATCCAATTCCTAGCCGTTATTGTATCACCCACCAAATTCCTGTTTGTGTTTTTTCCTCCAACGGACTACTACAGTAGGAGATCCAACCTGCAAGGTATTTATTCATTAAAAAGACATACTGTGGATTACGCAAGCGAGATAACCCTTAATTCGAAACATGTGACGTGACATTTTCAAATCTTTTCCCTCTTTTAGTCACTGAGAGCTCAGTGACTCCAAAACAATGTGTCTGTGTTCGAGATGGATTTTAGATCATAAGCATTTCCATCCCTTTTTAGCTTTATGAAGCAGATGTCTCTTCTTTTTAAGGTTTTTGATTTGGACAAAAAATATGAAATGTTTTTGAGAACTTGAGACATCAAAGGAGATGGCACAGTAGAAAAACCAGTTCTAACCTCTATGTTTCAGTGTTTTGAATCAAAAGAcaccatcccactgggcacagacgtcaattcaacatctttTCCATGTCCGTTAAACGTAATTTCATTGATTGGACGTGGTAACAATGTTGATTTAACCCGTGTGTGTGACCAGTAGGATGGTTTCACCAAACCAATTAAAATGACATAAGCTGAGCTCCAACTGTTTTACTAACTGTTTTACTATCTGTTTTTAAAAGCCTGGTGACCAACATTGAGTAAAAGTGTCAGTATTATCTCAATAAACCTATTTCAAAAGGA
>TU1709526
TGCTAACGCTCCGGAGTGGACCCCTCATCTCAAATGCGTCGTCTGGACCGTGAAGAGACATAGTCTACACACAACACATGAACGAAACAATACTGGATGAACTGCAATAAGAACAATCTGTTCTGTAGAAACAATGATTGACTATCAGTCGTTGCTTTCAAGCTCTCTTGCTTTTGCGGTTGGGAAGTTGTGAAAAAACGCTAAAGGACCAGGAACTTTAGAAGACTTCAGAGTTGCTATATATGCAGTCGACCGATTAATCCGGGAGCCCGGTCGAGTTTGAAAGTCTATGCAATAGGCTACATTTTCTTTTGACATCTTTTGACTCAGGGATTTGGCGTTTTGAAAGCTTGATGTCTACACATTTTTCCTAGGTTATGTTTTGTCGTGGTGGGCACATTCACGGGCTAAAGGAAATTGTATTTCTTTAACATTaccctgtttttgtttttgaaaATGGAGAGCAAATGAGAGGGGCATTTCCCGGGATTAATTGACAGCACAACGACAGAATGCGGGAGAGAGACCTACGGAGTGTGTGCAGAAGGGTGCTTCTGTTGGCcgtctgtctggtgtctctctgggGACAGCTGACCCTCGCTTCGTCACACAGAAGTCACATAGtgcatgtcaaagcaggGACCTGTGAAGTGACCGCCGCCCACCGCTGCTGCAACAAGAACAAGATCGAAGAGAGATCCCAGACGGTGAAATGTTCCTGCTTCCCCGGACAGGTTGCCGGGACAACAAGAGCGGCCCCATCTTGTGTGGACGCTTCCATAGTTGCCCAGAAGTGGTGGTGTCAGATGCATCCATGTATGGATGGGGAGGAGTGTAAAGTTTTGCCTGATCTGAAAGGCTGGAGCTGCAGTACGGGAAACAAAGTGAAGACGACGAAGGTCACGCGATAGTGCTGTCTGTCCTGGATCTGAAGACTTGGTGTCATCAGTCATTTCTTCCTTGACAGAAACCACTGGGTCTTCTTGGATGTGAGAACTATGTATTGAATGATTTTGGGAAGGAACCAGGGACCAGTAAGGCAACATGGAAAACTCCTGAAATTCTACTGAACGGATGCAGAGCAGAGACTTGACCTGGAAATAGCATAGAACCACCTATCCAGACAACTGGACTACTGATTACATCCAATTCCTAGCCGTTATTGTATCACCCACCAAATTCCTGTTTGTGTTTTTTCCTCCAACGGACTACTACAGTAGGAGATCCAACCTGCAAGGTATTTATTCATTAAAAAGACATACTGTGGATTACGCAAGCGAGATAACCCTTAATTCGAAACATGTGACGTGACATTTTCAAATCTTTTCCCTCTTTTAGTCACTGAGAGCTCAGTGACTCCAAAACAATGTGTCTGTGTTCGAGATGGATTTTAGATCATAAGCATTTCCATCCCTTTTTAGCTTTATGAAGCAGATGTCTCTTCTTTTTAAGGTTTTTGATTTGGACAAAAAATATGAAATGTTTTTGAGAACTTGAGACATCAAAGGAGATGGCACAGTAGAAAAACCAGTTCTAACCTCTATGTTTCAGTGTTTTGAATCAAAAGAcaccatcccactgggcacagacgtcaattcaacatctttTCCATGTCCGTTAAACGTAATTTCATTGATTGGACGTGGTAACAATGTTGATTTAACCCGTGTGTGTGACCAGTAGGATGGTTTCACCAAACCAATTAAAATGACATAAGCTGAGCTCCAACTGTTTTACTAACTGTTTTACTATCTGTTTTTAAAAGCCTGGTGACCAACATTGAGTAAAAGTGTCAGTATTATCTCAATAAACCTATTTCAAA

Function

NR:

description
PREDICTED: protein FAM19A2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569989.2 False 1849 mRNA 0.44 5 81432188 81602161
TU1709526 True 1822 TUCP 0.43 5 81432211 81602157

Neighbor

gene id symbol gene type direction distance location
LOC118940108 NA coding upstream 38588 81392702 ~ 81393600 (+)
LOC110494694 LOC106566046 coding upstream 51401 81374533 ~ 81380787 (+)
LOC110494692 LOC106566047 coding upstream 97089 81323567 ~ 81335099 (+)
LOC110494691 LOC106566048 coding upstream 118928 81284086 ~ 81313260 (+)
LOC110494688 LOC106566052 coding upstream 389569 81018030 ~ 81042619 (+)
LOC110494698 LOC106566043 coding downstream 226410 81828571 ~ 81847540 (+)
LOC118940109 NA coding downstream 259390 81861551 ~ 81862479 (+)
LOC110494700 tshb coding downstream 288396 81890557 ~ 81892633 (+)
LOC110494701 LOC106566040 coding downstream 302607 81904768 ~ 81911784 (+)
LOC110495197 NA coding downstream 324490 81926651 ~ 81927921 (+)
G1495409 NA non-coding upstream 6859 81425045 ~ 81425329 (+)
G1495408 LOC106586415 non-coding upstream 7479 81424478 ~ 81424709 (+)
G1495372 NA non-coding upstream 87627 81342127 ~ 81344561 (+)
G1495363 NA non-coding upstream 95920 81335195 ~ 81336268 (+)
G1495359 NA non-coding upstream 112097 81319813 ~ 81320091 (+)
G1495417 NA non-coding downstream 411 81602572 ~ 81603171 (+)
G1495707 NA non-coding downstream 2857 81605018 ~ 81605225 (+)
G1495708 NA non-coding downstream 3155 81605316 ~ 81605536 (+)
G1495712 NA non-coding downstream 5868 81608029 ~ 81608289 (+)
G1495722 NA non-coding downstream 11391 81613552 ~ 81613854 (+)
G1495362 NA other upstream 94025 81337017 ~ 81338163 (+)
G1495346 NA other upstream 138262 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2046751 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 2096116 79321093 ~ 79336076 (+)
G1492310 NA other upstream 2656461 78770747 ~ 78775727 (+)
G1496351 LOC106566032 other downstream 561045 82163138 ~ 82169750 (+)
G1497918 NA other downstream 2012104 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 2277771 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2523676 84125837 ~ 84174177 (+)

Expression


Co-expression Network