LOC110494698 (LOC106566043)


Basic Information

Item Value
gene id LOC110494698
gene name LOC106566043
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81828571 ~ 81847540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569990.2
TGAAGTTTCACATAGGGCCAATAGTGCAGTACATGTGAGCTGGAGACACAAGGCAAAAGGAGGTGGGGAAAACATTTTAGGGGCACGGCTCTAATCCTCAAACAGCCAATAAGAGGCAGACTGGACTGACCTCATCAGTTAGCACTCTAGTATCTTGGCCGGTCCAATTGTTTGAACTGGCCACTGAATGAACCAAACTTTGTCAACTTCTCTTCCATTTTACAGACCAGCACTTATTCAGACTACGAAGTGTTCATTTCCCCAGCACAGGGACACTACTTGTAGTAGTGGAGGTAGACTTAGACTTCTGTAGAGGTCTTTTGCTTCTTACACAGAGAAGCCCTGTTCTGAAGTGCCTCATTGAGAGGAGAGCTCCCCATCTCAGCCTGTAGAGCTCATCTGGAACTAGGAGGAGCTGCTGGCAAGGTGCCCATTGCTGTGTAGCAGCCATGCCGCCTGCCATGGGAGGACCCCAGGGGTACACCCCTCCAGaggggggctggggctgggcagtAGTGGTGGGAGCCTTCATCTCCATCGGCTTCTCCTATGCCTTTCCCAAGTCCATAACCGTCTTCTTCAAGGAGATTGAGGTCATTTTCGACTGCACCAGCAGCCAGGTGTCATGGATCTCCTCCATCATGTTGGCAGTGATGTATGCCGGAGGTCCTATCAGCAGTATCCTGGTTAATAAGTATGGGAGTCGTCCCGTCATGATGTGTGGAGGATTCCTGTCCGGCTGTGGACTGATTGCTGCCTCCTTCTGCAACTCAGTGGAAGGACTTTACTTCTGTGTGGGAGTGGTCGGAGGTTTGGGACTGGCATTCAATCTGAACCCAGCCCTTACTATGATTGGGAAGTACTTCTACCATAAGCGGCCCATCGCCAATGGAATCGCCATGGCAGGCAGCCCAGTGTTCCTATCCACCCTGGCCCCTCTCAACAGCTGGTTCTTTGACCAGTTTGGTTGGAGGGGCAGCTTCCTGATACTGGGAGGCCTGCTGTTCAACTGCTGCGTCGCTGGTTCTCTCATGAGACCCATCGGACCAAAACCACAGCCTGCAGTGAAAAGTGAAGATGCTGCCAAGGAGAGTACGACGTGCGGGCAGAAGTGTAACAGCTTTATCGACCTCTCGCTGTTCAAACACCGGGGCTTCGTGCTCTACCTCATGGGTAACGTCATCATGTTCTTTGGTCTCTTCTCCCCACTAGTTTTCCTTAGTAACTTTGCCAAGAGCAGGGACATCCCCAAAGAGAAGGCAGCCTTCCTGCTGTCTGTTCTGGCCTTTGTGGACATGGTGGCCCGGCCCTCCATGGGCATTGTGGCCAATACAAAGTGGATACGACCCAGGGTGCAGTACTTCTTTGCCTGCTCTGTGCTGTTGAACGGTGTGTGCCACGTCCTGGCGCCCATCTCCGTGGACTACACAGGCTTCGTTATCTATGCCATCTTCTTTGGCTTTGCCTTTGGCTGGCTGAGTGCAGTGCTGTTTGAGACGCTCATGGACCTGGTGGGAACGCAGCGCTTCTCCAGTGCAGTGGGACTGGTCACCATTGTGGAGTGTGGGCCTGTCTTGTTAGGTCCCCCTATGTTAGGGAAATTCAAAGACATCTACAATGACTACCAATACACCTACCAGAGCTGTGGGGTGATCCTTATCATTGCCAGTGTGTTCCTGTTCGTGGGGATGGGTACCAACTACCGGTTGTTGGACAaagagaaaaaggaggaggaaaggaaggctAAACTGGAGGGAAAAGAAGAAGAGTCCAACAAGGACAATGCTTCCAAAGAAGCCACCAATGACAGGGTGAGAGCAGTTGACGAGACAAAAACTGCAGAAGACATAATCTAACTTTCCTTGACATCAAATTCACGCATTCACATGGTACCTCAATACAGTCAATGAGATAATGTAGACCTCAAATTAATTTGGTTTAAGTCTTTGGCAGATAGCAATGTTCATGTAAACATATTTCTTCACCAGTTCCACTTCTGTCAATGAATAATGTATTATCAGCATAATATGACTGTGTCAAGATACACGTATGTATGCAACTTTTTACTGAAATGTACAACTGCCCTACCAAAAAATACTATATTTTACTGGAGTCCAAATAGTACATTTTCTGCATAAGTGTTGTGATATATTTTAGAATATTATTATATACAGGTAATTCCTATGTGTATAGTGTATTTGGAATTTCAGAAGTCCACCTCAAATAACTACAATGTACAGTATTATTCTGTGAAAGCACTAGTGCTTTTAGAAGGTTTAATGAATCACTGTAACATTTTGTTCACACTGTCATGATGATTGGTAGGTTTCTTTAATCTCCGAAAGCATTGTTACATGAATAATCAGGCATAGTTTCTTGATATTCACAGTTCTTCAATTCATCTTCAAAACAATTATATTCCCGTGTTGACTGCACAGCTAAAAGCTAGAGAGACCGATAACAACACCAACATCCAGTTTGAAGACTTGCAGAAACTGCTTCTGCAATATGATTCCCCGATCACACTTGTCACTATTTACAAAAATTGGCCATatccaggggcgcaactttggttttagaagtgggggtgGACATTACCATTGTTAGTTTTTgaatccagtcggataaacactccaaacagcctacccaaccGCTCGGAGGcttccgcatggtcctaaagcacaccgttacCTCGTTTTGTATCATATTCAAATGATAAAATTAGGGAGGGAAAAAAATGCAATTTCTAAATGtggggggggacatgtccccctcgtccccagtgaaagttgcggcCCTGGCTATATCGTTACAATTATGTAAACAAAAATGGGCTTTTTGGTATTCATTTAAGTTTAAGTtttggttaaggtttgggttaaggttaggtttataaTCAGATTAAAAAAATAGAAATTGCAGAAAAAGCCTGGGTTTAGCCATATTTATCACTATATGCCTCTGGTAACTAGTGATGACCACATTTTTAGCTAGCTAAACTCATGAATAGAAACACATCATCGGGTCTAACGGTTGTCTTGCGCCAAAATGGGAATGTGTAGGCCCTAAAATCAATGGCACTAATTCAATATAAATTtgttttttacaaaaaaatatgtacgtgtcagtttgtcactttcacgaggttggaaTATTAACTACTTTAGCcattggctcgaatctaggttgtgcctttagattttgAGAACATTTACAGAATTTTGCACTTCTATCACTGACATCTCATTCCGGGCCTGGTCTTCTTGGTCTGTTACGCAAGCATTTCCagaagtacccccccccccaataaaagTTTTCccaagttggatgaccattcaaacaaaaaaaatcccagtCTGAGCTAATTTTTTTCccatttcccagttgtcttgactgcactgaagtcggagatttccgagtttccagttgttttgaatgcagtATCTGTGACAACACCAAAGACAATACAACACTCTTGAACTATGAAGGGTGCAATTGGGGgcgttcctgcatgtgggcattTCTGCATCTGTAGGAACCACTCTTTATGTGTAAATGTGTCTTTTTTTTTGCTAGGACTCCGGTCCGCCAGGCAGGAGGCGGGGGCACTCCAGTACAGTATGTGGTAGTTATGCATGCCGAAGAGGCAGGGGGACAACGTCAACTAGTTAGCTAGTAATGTTAGACAGTGTCCTTCGCCCCAAGCCTGTTGGGCATTAGTTTCCCGCTGTTCTGTTAACAAGGTCGAGGGCAGTTGTTCGGCAGGCATTTAGGACACTGGGTAATAGCTAGCCAGTTAGTAGGCTAGGACTCCGGTACACAGTAGGTGggataggtagctagctagcacaccgGTACACAGTGTACTTTCCCCTGCCTGTCGGGCACTTTTTTCCGAAGTACTGTTAACGACAGCAAGGGCAGGTTTTCGGCAGGTGTTTAGGACACTGGGtgctaactagttagctagctaggatTCCAGCAGGTGTTCGGCAAGCCGGAGCAAAAAACACTGTgtgatagctagctagttagctaggacTCCGGTACACAGCAGCAGAAGAAAGGTTGCTAGTTAACGATAGCTAGGACACCGGTAGACAGTGTACTTCGCCCATGCCTGTCATGCACTAGTTTCCCGCAGTTCTGGTAATAATAGCAAGGGCAGGTGTTTAGCAGGTGGGAATGAAGGACACTGTGTGCTAGCTTGTTAGCTTACTAGCTAGGACGCCGGAACACAGCTAGCGGGGAAGACTCCTGCAGATAGCTGTCGGGTGCGGTTCCTGTGGATGATTGGAATATCCAGCTACTACATTTCTTGCCTTAACCCATTAGCTATTTATCTCCTCTAGGTGGCAGTATTTAGTCTTACGTTAATGACTCTTGAGCTCCTGAAAGTTTATCCTCATCTCGGAGGAAATTGTTTGCACGTTATATTGGAAAATGACACTGTATATCACTGTTACTGATTGATTTAATTTTAAGTAACTTAAAAAATATTCCAGACATAACTACCTTGAGGTTGCACTAATGTCGCCTACTTGATGAGACTAAAGTCATAATTGTGAATGCAGAAAACAAGCGTTTGATCCAATGAAAGTTGATAGGCATTGATTGTCCATGAGGGAACAGACAATCTTTGGCCATCTTCATCATTTTCATATGTTCAAGGGCACTTGGAGGGTCTTGAAGGGATCCAGCTTTTTGTCAGAATTGACTTTTCATATCAGGGCTAGGAGAaattacgcagcaggttaggggAATTAGGTTAAAATTAggaaaatggttagggttatcTAAAATGCACAAAAAAGTGTCTACttttaacatacatttttcaaaagcTGGGTCCAATCTAGACATTACCGACTTGAAGGGAGGCACTTTGACGTCAACACGCGAAGACACTTTTAATCATGTGTGTCATACATGGATGATGACCATGATGTGAATAGTTTTGTGATATTTCAATGATTGTCTTTTTTTCTTTCCAcaaaaaataaaactgaaatggGATGTTGTGTTCATTAAGAGTTATTTACTTTGGcctaaatataaaataaaatatccccacagcta
>TU1710167
GTCCAATTGTTTGAACTGGCCACTGAATGAACCAAACTTTGTCAACTTCTCTTCCATTTTACAGACCAGCACTTATTCAGACTACGAAGTGTTCATTTCCCCAGCACAGGGACACTACTTGTAGTAGTGGAGGTAGACTTAGACTTCTGTAGAGGTCTTTTGCTTCTTACACAGAGAAGCCCTGTTCTGAAGTGCCTCATTGAGAGGAGAGCTCCCCATCTCAGCCTGTAGAGCTCATCTGGAACTAGGAGGAGCTGCTGGCAAGGTGCCCATTGCTGTGTAGCAGCCATGCCGCCTGCCATGGGAGGACCCCAGGGGTACACCCCTCCAGaggggggctggggctgggcagtAGTGGTGGGAGCCTTCATCTCCATCGGCTTCTCCTATGCCTTTCCCAAGTCCATAACCGTCTTCTTCAAGGAGATTGAGGTCATTTTCGACTGCACCAGCAGCCAGGTGTCATGGATCTCCTCCATCATGTTGGCAGTGATGTATGCCGGAGGT
>TU1710166
ACTGTAACATTTTGTTCACACTGTCATGATGATTGGTAGGTTTCTTTAATCTCCGAAAGCATTGTTACATGAATAATCAGGCATAGTTTCTTGATATTCACAGTTCTTCAATTCATCTTCAAAACAATTATATTCCCGTGTTGACTGCACAGCTAAAAGCTAGAGAGACCGATAACAACACCAACATCCAGTTTGAAGACTTGCAGAAACTGCTTCTGCAATATGATTCCCCGATCACACTTGTCACTATTTACAAAAATTGGCCATatccaggggcgcaactttggttttagaagtgggggtgGACATTACCATTGTTAGTTTTTgaatccagtcggataaacactccaaacagcctacccaaccGCTCGGAGGcttccgcatggtcctaaagcacaccgttacCTCGTTTTGTATCATATTCAAATGATAAAATTAGGGAGGGAAAAAAATGCAATTTCTAAATGtggggggggacatgtccccctcgtccccagtgaaagttgcggcCCTGGCTATATCGTTACAATTATGTAAACAAAAATGGGCTTTTTGGTATTCATTTAAGTTTAAGTtttggttaaggtttgggttaaggttaggtttataaTCAGATTAAAAAAATAGAAATTGCAGAAAAAGCCTGGGTTTAGCCATATTTATCACTATATGCCTCTGGTAACTAGTGATGACCACATTTTTAGCTAGCTAAACTCATGAATAGAAACACATCATCGGGTCTAACGGTTGTCTTGCGCCAAAATGGGAATGTGTAGGCCCTAAAATCAATGGCACTAATTCAATATAAATTtgttttttacaaaaaaatatgtacgtgtcagtttgtcactttcacgaggttggaaTATTAACTACTTTAGCcattggctcgaatctaggttgtgcctttagattttgAGAACATTTACAGAATTTTGCACTTCTATCACTGACATCTCATTCCGGGCCTGGTCTTCTTGGTCTGTTACGCAAGCATTTCCagaagtacccccccccccaataaaagTTTTCccaagttggatgaccattcaaacaaaaaaaatcccagtCTGAGCTAATTTTTTTCccatttcccagttgtcttgactgcactgaagtcggagatttccgagtttccagttgttttgaatgcagtATCTGTGACAACACCAAAGACAATACAACACTCTTGAACTATGAAGGGTGCAATTGGGGgcgttcctgcatgtgggcattTCTGCATCTGTAGGAACCACTCTTTATGTGTAAATGTGTCTTTTTTTTTGCTAGGACTCCGGTCCGCCAGGCAGGAGGCGGGGGCACTCCAGTACAGTATGTGGTAGTTATGCATGCCGAAGAGGCAGGGGGACAACGTCAACTAGTTAGCTAGTAATGTTAGACAGTGTCCTTCGCCCCAAGCCTGTTGGGCATTAGTTTCCCGCTGTTCTGTTAACAAGGTCGAGGGCAGTTGTTCGGCAGGCATTTAGGACACTGGGTAATAGCTAGCCAGTTAGTAGGCTAGGACTCCGGTACACAGTAGGTGggataggtagctagctagcacaccgGTACACAGTGTACTTTCCCCTGCCTGTCGGGCACTTTTTTCCGAAGTACTGTTAACGACAGCAAGGGCAGGTTTTCGGCAGGTGTTTAGGACACTGGGtgctaactagttagctagctaggatTCCAGCAGGTGTTCGGCAAGCCGGAGCAAAAAACACTGTgtgatagctagctagttagctaggacTCCGGTACACAGCAGCAGAAGAAAGGTTGCTAGTTAACGATAGCTAGGACACCGGTAGACAGTGTACTTCGCCCATGCCTGTCATGCACTAGTTTCCCGCAGTTCTGGTAATAATAGCAAGGGCAGGTGTTTAGCAGGTGGGAATGAAGGACACTGTGTGCTAGCTTGTTAGCTTACTAGCTAGGACGCCGGAACACAGCTAGCGGGGAAGACTCCTGCAGATAGCTGTCGGGTGCGGTTCCTGTGGATGATTGGAATATCCAGCTACTACATTTCTTGCCTTAACCCATTAGCTATTTATCTCCTCTAGGTGGCAGTATTTAGTCTTACGTTAATGACTCTTGAGCTCCTGAAAGTTTATCCTCATCTCGGAGGAAATTGTTTGCACGTTATATTGGAAAATGACACTGTATATCACTGTTACTGATTGATTTAATTTTAAGTAACTTAAAAAATATTCCAGACATAACTACCTTGAGGTTGCACTAATGTCGCCTACTTGATGAGACTAAAGTCATAATTGTGAATGCAGAAAACAAGCGTTTGATCCAATGAAAGTTGATAGGCATTGATTGTCCATGAGGGAACAGACAATCTTTGGCCATCTTCATCATTTTCATATGTTCAAGGGCACTTGGAGGGTCTTGAAGGGATCCAGCTTTTTGTCAGAATTGACTTTTCATATCAGGGCTAGGAGAaattacgcagcaggttaggggAATTAGGTTAAAATTAggaaaatggttagggttatcTAAAATGCACAAAAAAGTGTCTACttttaacatacatttttcaaaagcTGGGTCCAATCTAGACATTACCGACTTGAAGGGAGGCACTTTGACGTCAACACGCGAAGACACTTTTAATCATGTGTGTCATACATGGATGATGACCATGATGTGAATAGTTTTGTGATATTTCAATGATTGTCTTTTTTTCTTTCCAcaaaaaataaaactgaaatggGATGTTGTGTTCATTAAGAGTTATTTACTTTGGcctaaatataaaataaaatatcccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569990.2 False 5079 mRNA 0.45 5 81828571 81847540
TU1710167 False 507 TUCP 0.52 2 81828732 81833101
TU1710166 True 2786 lncRNA 0.42 1 81844748 81847533

Neighbor

gene id symbol gene type direction distance location
LOC110494696 LOC106582736 coding upstream 226410 81432188 ~ 81602161 (+)
LOC118940108 NA coding upstream 434971 81392702 ~ 81393600 (+)
LOC110494694 LOC106566046 coding upstream 447784 81374533 ~ 81380787 (+)
LOC110494692 LOC106566047 coding upstream 493472 81323567 ~ 81335099 (+)
LOC110494691 LOC106566048 coding upstream 515311 81284086 ~ 81313260 (+)
LOC118940109 NA coding downstream 14011 81861551 ~ 81862479 (+)
LOC110494700 tshb coding downstream 43017 81890557 ~ 81892633 (+)
LOC110494701 LOC106566040 coding downstream 57228 81904768 ~ 81911784 (+)
LOC110495197 NA coding downstream 79111 81926651 ~ 81927921 (+)
LOC118940161 NA coding downstream 176527 82024067 ~ 82026625 (+)
G1495723 NA non-coding upstream 213936 81614344 ~ 81614635 (+)
G1495722 NA non-coding upstream 214717 81613552 ~ 81613854 (+)
G1495712 NA non-coding upstream 220282 81608029 ~ 81608289 (+)
G1495708 NA non-coding upstream 223035 81605316 ~ 81605536 (+)
G1495707 NA non-coding upstream 223346 81605018 ~ 81605225 (+)
G1496010 NA non-coding downstream 2040 81849580 ~ 81849895 (+)
G1496024 NA non-coding downstream 18904 81866444 ~ 81867444 (+)
G1496026 NA non-coding downstream 21874 81869414 ~ 81873116 (+)
G1496027 NA non-coding downstream 26121 81873661 ~ 81878079 (+)
G1496030 LOC106566041 non-coding downstream 36743 81884283 ~ 81887740 (+)
G1495362 NA other upstream 490408 81337017 ~ 81338163 (+)
G1495346 NA other upstream 534645 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2443134 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 2492499 79321093 ~ 79336076 (+)
G1496351 LOC106566032 other downstream 315666 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1766725 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 2032392 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2278297 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2648389 84495929 ~ 84497398 (+)
G1496006 NA non-coding upstream 2718 81841749 ~ 81842030 (+)
G1496002 NA non-coding upstream 6460 81838071 ~ 81838288 (+)
G1496001 NA non-coding upstream 7856 81836615 ~ 81836892 (+)
LOC110494698 LOC106566043 other upstream 11647 81828571 ~ 81847540 (+)

Expression


Co-expression Network