LOC118940109


Basic Information

Item Value
gene id LOC118940109
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81861551 ~ 81862479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036711.1
CTACAGCTTTGAGCTACAGAGGCCGTCAAGAGTAAGGAAGATGCTGAAGTCAAACGTCAGAACAAGACAGCAGACATGGTTGCCGTGACGGAAAGCACAAGGTTAAGTTCTCTGTTggcatcagaaccactatgacaaAATGGTTGACGAGAAAGATGCAGAACTTGATGATAAGAAGAGAAAAGACATGGAGGCAGCTGCTAATAGAACATCACTGGAATTGGATCTGTCACAGCAGAACATGGAAAATGACCATTTGAAGGAACAACTGGAGAAAGAAATGAAGGAGAGGgaAAGCTGACTACAGGAGATTACAGTCCTGGAAAAAGAGACGGCATGTCAGAAAATGAGCAGACAACTGCAGACACAGGATAAACAGGAAATGGAAAGTAAAGCCCCAAGAACTCCATCTTGGAGCTCCATAACAACAGTGAGAGCAACACCGCAAATTAAG

Function

NR:

description
synaptonemal complex protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036711.1 True 454 mRNA 0.44 4 81861551 81862479

Neighbor

gene id symbol gene type direction distance location
LOC110494698 LOC106566043 coding upstream 14011 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 coding upstream 259390 81432188 ~ 81602161 (+)
LOC118940108 NA coding upstream 467951 81392702 ~ 81393600 (+)
LOC110494694 LOC106566046 coding upstream 480764 81374533 ~ 81380787 (+)
LOC110494692 LOC106566047 coding upstream 526452 81323567 ~ 81335099 (+)
LOC110494700 tshb coding downstream 28078 81890557 ~ 81892633 (+)
LOC110494701 LOC106566040 coding downstream 42289 81904768 ~ 81911784 (+)
LOC110495197 NA coding downstream 64172 81926651 ~ 81927921 (+)
LOC118940161 NA coding downstream 161588 82024067 ~ 82026625 (+)
LOC110494703 LOC106566038 coding downstream 175094 82037573 ~ 82047285 (+)
G1496010 NA non-coding upstream 11656 81849580 ~ 81849895 (+)
G1496006 NA non-coding upstream 19521 81841749 ~ 81842030 (+)
G1496002 NA non-coding upstream 23263 81838071 ~ 81838288 (+)
G1496001 NA non-coding upstream 24659 81836615 ~ 81836892 (+)
G1496024 NA non-coding downstream 3965 81866444 ~ 81867444 (+)
G1496026 NA non-coding downstream 6935 81869414 ~ 81873116 (+)
G1496027 NA non-coding downstream 11182 81873661 ~ 81878079 (+)
G1496030 LOC106566041 non-coding downstream 21804 81884283 ~ 81887740 (+)
G1496031 NA non-coding downstream 25560 81888039 ~ 81888262 (+)
G1495362 NA other upstream 523388 81337017 ~ 81338163 (+)
G1495346 NA other upstream 567625 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2476114 79382417 ~ 79387551 (+)
G1496351 LOC106566032 other downstream 300727 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1751786 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 2017453 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2263358 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2633450 84495929 ~ 84497398 (+)

Expression


Co-expression Network