LOC110494700 (tshb)


Basic Information

Item Value
gene id LOC110494700
gene name tshb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81890557 ~ 81892633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569992.2
ttaccatccctgactttgctgatatctactttattgaggaaaattgTACTTattatgactgtgatatgtggtatCTTCAGATAGCTATCttcagatgaatgcactaactgtaagtcgctctggataagaacgtctgttaaatgactcaaatgtaattaTGTATGTCAACCTGATAATGGACCTGGAGACTCCTGCTTCCACTCGGTCAGAGATTGGAGATAATGGTCCAGTAGGATCAAGGTGGATTAGAATGCCTGTATAAAGAGCATCAGGCAGCATCATCAGGCCTGCAGGTGCCCAGCTCTACCAGGTTCTTGGTTGTATGACAGAAAGTTGTCGCTGCTTGCCAAATGGAATCGTCTGTGGCCATGTGTGGTCTCCTTTGCCTGCTGTTCAGCCAAGCTGTCCCCATGTGTGTGCCCACGGACTACACTCTGTATGAGGAGAGACATGAATGTGACTTCTGCGTGGCCATCAATACTACCATTTGCATGGGTTTCTGCTACTCAAGGGACAGTAATATGAAGGAGCTGGCCGGACCACGATTCCTGGTCCAGAGAGGCTGTACCTATGACCAGGTGGAGTACCGTACAGTGATACTGCCTGGTTGCCCGCTCCATGCCAACCCTCTCTTCACCTATCCCGTAGCCCTCAGCTGCCACTGTGGCACTTGCAACACAGACAGTGATGAGTGTGCCCACAAGGCCAGCAGTGGTGACGGCCCCAGATGTACCAAGCCACTCAGACACATCTACCCATACCCTGGCCTGAACAACTACATCCACCCCAACTAAATCCTCTCCCTTCCGtggacagatgtaggatcttaatttgagccgttttctacagcaggaaaataattatttaacaACAGGAAATGCTAATTATTACATGGATTATAGTTCATGGTAATTTTTTgtagggttgatacatttttcgttaggcTAAATCATgcctgacattttaaagtggaaattacaaactttagaagtctTTTTGCTGAGCAGGAAAATGTTCAGCaacaagagtgatcaaattaagaccctGCATCTGTACGATGGCTGTAATGACCATACTACCAACAGGGGAGGTAATGAGAATGATCAGTTCAAATAAAGTTTATGGTCAATAGCCTACTCATTATCAAAATAGAACATCATTGTGCTTAGcattgtgtttatgtgtttgtggTGGATACATACCAGTAGCTACAGGGTGGTGAACCCCATGTATTGTGATATgtatactgtctgttttgtatctGGATGTGCTTTTTAGTTTATTGCTATACTTACAATGGAGGCTGACCCTGGTATTTTCGTCTGCTTCCTGGGTTTGtccttctctgtctgtcctgtccattGACTCACTGAGCTATTTTGTTTACGTTGAACCAATACCATGAATGCAACTAGATTAAAGCTGAAGTCTGTAAA

Function

symbol description
tshb Predicted to contribute to hormone activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Implicated in congenital nongoitrous hypothyroidism 4 and hypothyroidism. Biomarker of hyperglycemia and severe acute respiratory syndrome.

NR:

description
thyrotropin subunit beta-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05251 TSHB; thyrotropin subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569992.2 True 1436 mRNA 0.44 3 81890557 81892633

Neighbor

gene id symbol gene type direction distance location
LOC118940109 NA coding upstream 28078 81861551 ~ 81862479 (+)
LOC110494698 LOC106566043 coding upstream 43017 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 coding upstream 288396 81432188 ~ 81602161 (+)
LOC118940108 NA coding upstream 496957 81392702 ~ 81393600 (+)
LOC110494694 LOC106566046 coding upstream 509770 81374533 ~ 81380787 (+)
LOC110494701 LOC106566040 coding downstream 12135 81904768 ~ 81911784 (+)
LOC110495197 NA coding downstream 34018 81926651 ~ 81927921 (+)
LOC118940161 NA coding downstream 131434 82024067 ~ 82026625 (+)
LOC110494703 LOC106566038 coding downstream 144940 82037573 ~ 82047285 (+)
LOC110494705 LOC106566037 coding downstream 163666 82041470 ~ 82063859 (+)
G1496031 NA non-coding upstream 2295 81888039 ~ 81888262 (+)
G1496030 LOC106566041 non-coding upstream 2817 81884283 ~ 81887740 (+)
G1496027 NA non-coding upstream 12478 81873661 ~ 81878079 (+)
G1496026 NA non-coding upstream 17441 81869414 ~ 81873116 (+)
G1496024 NA non-coding upstream 23113 81866444 ~ 81867444 (+)
G1496040 NA non-coding downstream 7551 81900184 ~ 81900390 (+)
G1496042 NA non-coding downstream 9280 81901913 ~ 81902124 (+)
G1496261 NA non-coding downstream 174107 82066740 ~ 82067138 (+)
G1496262 NA non-coding downstream 182004 82074637 ~ 82075690 (+)
G1495362 NA other upstream 552394 81337017 ~ 81338163 (+)
G1495346 NA other upstream 596631 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2505120 79382417 ~ 79387551 (+)
G1496351 LOC106566032 other downstream 270573 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1721632 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1987299 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2233204 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2603296 84495929 ~ 84497398 (+)

Expression


Co-expression Network