LOC110494701 (LOC106566040)


Basic Information

Item Value
gene id LOC110494701
gene name LOC106566040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81904768 ~ 81911784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569994.2
AGACAGACGATACTTTTACGTACTAGAACGACATATCTCATCTCTATCTCATCTCAATTTCAGAACTCTAGCAGCAGCTCATCAGCACTTGATCTACTGACCACTACGATCGACTTACGACTAGCTAAGATATCACGGTTCCGTTCTACATCTGTTACCTATCTGAAAGTTACCATGGCTCACCAGCAGCAGATCAGCCTTCCCGCTAAACTGATCAATGGTGGTATTGCTGGCATTGTTGGGGTCACCTGTGTGTTTCCCATCGACCTTGTAAAGACCAGGTTACAGAACCAGAGGCAAGGTCATCAGATCTACAAGAACATGCTGGACTGCCTCGTTAAGACTGTTCGATCAGAAGGATACTTTGGCATGTATAGAGGTGCTGCTGTGAATCTGACCTTGGTCACTCCTGAGAAGGCCATCAAACTAGCTGCAAATGACTTCTTCCGCCAGCATCTTAGCAAAAATGGGAAAGGCTTGACGGTGTTTAAGGAGATGTTGGCAGGTTGTGGTGCAGGCATATGCCAAGTTGTCATTACGACTCCTATGGAAATGCTTAAGATTCAACTTCAGGACGCAGGGAGGCTAGCGGCTCAGCAGAGAATGCCAGCCATGATGTCTCCTACTAAGCTGGCTGCCACTAACACAGTGCTGAGCAGGTCCTACAACGTGGGGCCCAGTCCTGCAGCCAGGGCAGTGTCTGCTACCCAGATTGCccgggaccttctgcacacacaAGGCATCCAGGGCCTCTACAAAGGCCTCGGGGCCACCCTCATGAGAGATGTTCCCTTCTCCATGGTCTACTTCCCACTGTTTGCCCACCTTAACCGGCTGGGCCAGCCATCTCGAGATGAATCCGCACCCTTCTACTGGGCTTtcttgtctggctgtctggctggctccACTGCAGCTGTGGCAGTCAATCCTTGTGATGTTGTAAAAACGAGATTGCAGTCTCTGAGCAAAGGGGCCAACGAGGAGAGCTACAACGGTGTGGTTGACTGCGTCAGTAAGATCATGCGTAAGGAGGGTCCCTTTGCCTTTCTGAAGGGAGCAGGATGCAGGGCGCTGGTCATCGCTCCTCTCTTCGGCATTGCACAGGTCATGTACTTTATTGGCATCGGAGAGTTCATCTTGGACCAGTCACCTTTCAACTACTTGTCTGCATGAGACAAGACCAGCATTACCTGGCTGTGCATGGGACTAAAAATACTGGCAGCTATATTCCATCAGTATTTGGTACAGAAAAAATAAACTACGTAAGACTGAGGTGTCTGTCAGAGCTTTGGATCCTagaaaagagaaaataaaaaaaacattctatAGTACTTGACTTCCTGTATGGTCTAACAGCTGTACTGCACTTCCGCCAAATATTTTCCTGGCTTATTTAATGGGCTGTGAACAACGATTGCACTTGAAGGTGTCAGTTTGCTGAACTGCGGACCATGAAGTGCAGCAGTGGCACTGGCTGGGGAGTCTCCCTGGTTCCTCTCCCTCTGTGAGGGGCCAtttcaacacaaacaacaactgaaagtttttttcattgttttttgttttctttatcCATTGTTTATGTAAAAAATATTTGATAATTTATTCCACTTTTGTGCTGTTGGTTGAATGCCATAGTGTGGTGTAAAGATTTGTAtaggtcacaggaggttggtggcaccttaattggggaggacgggctcgtggtaatggctggagtggtgtcAAATACACacttggtttccatgtgtttaattCCATTtgttccattccagacattatgagccgtcctcccctcagcctcCATTTGTGAAGGTATTTCATAGCCTCTGTCATGTTTTTGCAGTCATGTGATTTCAAGCTATCAATCTGATTGACACATTTGAATTGTTAATTTAACTGTGGTCGATTTGAGAAGGCTAAAGAAACACGTTAGAATTagctttttaatgttttttttcaaaAGAAACCTCTTCAACTTGCATTTCACTGAGGTTTAGTTTGAGACAGAGGGACCAAGCACCTAGGGGTTATTCCACAGCTACACCTCATGGTTCGCTGCCACAGACACTCGCATCttagtttattttttacattttaaatacTTGAATCATTTATATTATGCATatttatacatacatatacagtaaggTTGTGAAGTGGTCTGTTACTTCAGGGCTATAGACAAAAGTTCAATAATTTTAGTTTATTTTATTAATGACATGCCCCTAAATGTAATGCACATGGTTTTGTATTTGCCTTAGCTGAGTGGATTGGCATTTTTCTCAGACTGACTGATCCTGCCAAATAGCATCACCGACGCTATCTGCACCAGGTCATCTAACAAAGGAAATTACTGTTACATCACTTTATGTTGTATGTCTAATTTTGATTTGTATGTATTTAAGTGATGCCCAGGTTGACACAACCTGCAGTCCTGACTGTTATATCCACGGGACAGGCAGGTTTAGGTTCATGCAATGTGTGGATGAAGggtgggttgaataaagagaacaatgtatttaaaaaaaaa

Function

NR:

description
mitochondrial glutamate carrier 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569994.2 True 2530 mRNA 0.44 10 81904768 81911784

Neighbor

gene id symbol gene type direction distance location
LOC110494700 tshb coding upstream 12135 81890557 ~ 81892633 (+)
LOC118940109 NA coding upstream 42289 81861551 ~ 81862479 (+)
LOC110494698 LOC106566043 coding upstream 57228 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 coding upstream 302607 81432188 ~ 81602161 (+)
LOC118940108 NA coding upstream 511168 81392702 ~ 81393600 (+)
LOC110495197 NA coding downstream 14867 81926651 ~ 81927921 (+)
LOC118940161 NA coding downstream 112283 82024067 ~ 82026625 (+)
LOC110494703 LOC106566038 coding downstream 125789 82037573 ~ 82047285 (+)
LOC110494705 LOC106566037 coding downstream 144515 82041470 ~ 82063859 (+)
LOC110494706 LOC106566035 coding downstream 190240 82102024 ~ 82105799 (+)
G1496042 NA non-coding upstream 2644 81901913 ~ 81902124 (+)
G1496040 NA non-coding upstream 4378 81900184 ~ 81900390 (+)
G1496031 NA non-coding upstream 16506 81888039 ~ 81888262 (+)
G1496030 LOC106566041 non-coding upstream 17028 81884283 ~ 81887740 (+)
G1496027 NA non-coding upstream 26689 81873661 ~ 81878079 (+)
G1496261 NA non-coding downstream 154956 82066740 ~ 82067138 (+)
G1496262 NA non-coding downstream 162853 82074637 ~ 82075690 (+)
G1496265 NA non-coding downstream 165778 82077562 ~ 82077769 (+)
G1496267 NA non-coding downstream 168612 82080396 ~ 82080595 (+)
G1495362 NA other upstream 566605 81337017 ~ 81338163 (+)
G1495346 NA other upstream 610842 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2519331 79382417 ~ 79387551 (+)
G1496351 LOC106566032 other downstream 251422 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1702481 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1968148 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2214053 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2584145 84495929 ~ 84497398 (+)

Expression


Co-expression Network