LOC110494706 (LOC106566035)


Basic Information

Item Value
gene id LOC110494706
gene name LOC106566035
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82102024 ~ 82105799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570000.2
CATCTGAATCAGAACATCCTGTTGAGTACACCTGTTGAATACACCTGTCTCAATGTTCTACAGGACTAAGAAGACCGTGGCTGGATCTTCAGGCTGGTTGTGGCATCACCCCAGTCACATCGCACTGAGCCAGGCTGAGGAAAACAGGAGTGCCCTGGCAAAGGGACAGTGATGGAGGTGCCACTGGTTAACTTTGAGAACATGGATGATATCGGCATCAACATGGGCGTCCCCGGTGATTCGGGGTACCCCACTTCACCCACTTCAGAGGCAGCGCCTGATCAGAACCCTGTCACCAATCGTGTGATGTCACCAAATCCATCACAGCACCACGGGCACCAGACCAGGCCAGAGGGGTTTTCTCCCTCTACAACGCCTATACTGACTACTAAAGACCCGTCTAGCTGCAACAGTCTGCTGTCCAACTTCAAACTCCTGATGAACAGTGAAGGCTCGCCGACAGACAGTGTCTTCAGTAAGCTGGTTCAGGAGTGCTGTGATAACGAAGAAGACCTGTTTGGGGAGAAACTGGGAGTGGAGGACGGGGATCCGAAAGTGGTCATCAATATTTCAGGCATGATGTTCGAGACACAACTCAAAACTTTATCGCAGTTCCCAGACTCCCTGCTCGGAGACCCCATGAAAAGGATGGAATACTTTGACCCGATGAAGAACGAGTACTTTTTCGACAGGAACCGTCCTAGCTTTGATGGGATCTTGTACTTCTATCAGTCTGGGGGCAAAGTCCGAAGACCGGCCAACGTCCCCTTAGAGATTTTCGCAAGAGAGATAGTTTTCTATGAGTTAGGAAGAGAAGCTATGGAACAGTTCCGGGAAATGGAGGGGTTCATAACAGAACCCGAGCCGCTGTTGCCCACCAACGAGGTCCACAAGCAGTTCTGGCTCCTGTTTGAGTATCCGGAGAGTTCCAGTGCAGCTAGGTCAGTGGCCCTGGTGTCTGTCTTCGTTATTGTCATCTCTATCTTCATTTTCTGCCTGGAGACTCTGCCAGAGTTCCGTGATGACGTAGACTTTATCACCACCTTTTCCCTGGGGGTCAATGGAACCCAGGAGGGTCCTCCTATAGTCCAAAAAGACTTATTCGCCTATTTCACAGACCCCTTTTTCATTGTGGAAACCATCTGCATAATTTGGTTCTGCTTTGAGCTTGGCGTACGCTTTGTGGTCTGCCCCAGCAAAAGTGACTTCTTCCACAACATTATGAACACCATTGACATTGTCTCTATAATACCCTATTTCGTAACCATGGCTACAGAGCTGTACACCACGCCAGATGAAGACATCAACTCCAGCCAAAACATGTCACTGGCCATCTTACGCATCATCCGTCTAGTGCGAGTCTTCCGGATCTTTAAGCTGTCGCGACACTCCAAGGGACTTCAGATCCTGGGCCAGACCCTGAAAGCTAGTATGAGGGAGCTGGGCCTGCTGATCTTCTTCCTCTTTATTGGAGTCATACTCTTCTCCAGTGCCATCTACTTTGCTGAGGTGGACGAGCCCCACACACAGTTTGTCAGTATCCCTGACGGGTTCTGGTGGGCTGTGGTGACAATGACCACTGTGGGATACGGGGACATGTGTCCTACTACTCTGGGAGGCAAAATGGTGGGGACTCTCTGTGCCATTTCCGGCGTGTTGACCATCGCCTTACCCGTCCCTGTTATCGTCTCCAACTTTAACTATTTCTACCACCGGGAGACAGAGCAAGCAGAGAAACAAGTGATTGACGATGCAGCAGAAGCAGCTCAGAAAATAACCGACGCAAATAAGTATGAGTATGGTAGCACACCCTCTCTTAACATTAACACAATCAATGGTAGCTTGCAGAATGACAAGAATGGTATGTAATGGGTTTATCATTTAAGGGATTATAACCAAGGACATTACAAACTGAGAAATCTAACATATACCAAAATGCACTGATATTATTTTTGTCTCAGTATTTTATACTCTATTCATTGCAGCGTTGGTCCACGTAGTAGGCTATACTATACATCTCTTTCACAATGTTCAAAATAAGGAAGTAATATTGGTTATCAGCCTGCCTGATCAGCATGTGGAtgtgtcaaagtgtaattaagatCAAATGAACACAGTTACAGCATATTACATTTACAGTTGGCTCTGGACAGACCTTGTGCACGTAGTGTGATTATAAGCGCTTAAATCCTAAGCAGATGTATTTGGCAActtgtttcctttcaaatcatcttataaataatacaaatattaattacactttgaactGCATTACTGTACATTGTCAAAGACTGAAGTATGAAAAACACCCTTGGATCAGGGCTCATGTTAAAACTCGTTTTCATGGTGTGCTTTGCGACATTCATCAGCCTGCCATATTCAGCAGTCTCAATATAGATCTTGGCATGATCTCCAAGGACTGTCTGGAAGAGCACTTCTGGAAGGAGACATGGGGACACCATTGAGTGCACAATATGCTGTCAGAAAATCCATCAGTTGTGGTCACCGCAGTAGTTTTATCACACCATCTATCTAATAATGCAGTCATTTTATAACGCCATCTATCTAATAATGCAGTCGTTTTATCACGCCATCTATCTAATAATGCAGTCATTTTATCACACCATCTATCTAATAATGCAACTATTTATCACACCATCTATCTAATAATGCAGTTGTTTTATCACACCATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCTAATAATGCAGTCATTTTATCACGCCATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCCAATACTAACTACCTACTTTAGCAGGTTAGCTACGTTGCTTATGACTTCACTCTGTATGCCTTACAGtactgtagtaaaaaaaaaaaactaaatcatGGCATGTTATGATATCAGGTCAAAATGTCATAATATTtagaccaaaccctaaccctgacctatATACACCTTCATCTTTACCTTTGTATGTATTTCAGGAAAATAATCCCATCAAACTGTTACTTGTATGCAAAAAAAAGGAACAGTAGTTGCATGTTAAGCTCACACAACGTATTACATCATATGAAAATGTGTTGATTCGCGCAATAGCATCAAGAACACGCTTATTAATAGAAAGCAATCAAAAGAGGAAAGGACAAAGTGGCACACCTCTTTGTACCGTTATTGATTGAAGCGTTATTCCAACATTTAGCTGTCGGTGGCCTTGCATGGTATACAGTAGTGTGCCGAAACAATGAAACACTGGTATCGTGTATCAGAACATGTAGGGCAGATAGTTCTAGTGACTCTCACATTTCTCTCGTACTGTAGTTCTTTTAATTCCTTTCCATGCATTTGATATGGACATAACTCAATTGGATTTAGGAATTTTTTGATAAACGTTTAGTTAATGCCATCAATGAATTAACAAATGAACTATTACATTATCACACTTTAGGTATAGTTTATACTATGATATGTATTTATAAATAAACCCACATGCATGCtacacttcaaatatgaacaTTTATATTATCAGCGGTTATACAAACAATGACCATGCAGAAATGGCATTGGATATATTGAGTTGTTCAACACTGCAATTAACTGTTTCTTGAAAtagttcccacatttgctgagcacttgttggctgcttttccttcactctgcggtccaactcatcccaaaccatctcaactgggttgaggtcgggtga
>TU1710472
gaactGCATTACTGTACATTGTCAAAGACTGAAGTATGAAAAACACCCTTGGATCAGGGCTCATGTTAAAACTCGTTTTCATGGTGTGCTTTGCGACATTCATCAGCCTGCCATATTCAGCAGTCTCAATATAGATCTTGGCATGATCTCCAAGGACTGTCTGGAAGAGCACTTCTGGAAGGAGACATGGGGACACCATTGAGTGCACAATATGCTGTCAGAAAATCCATCAGTTGTGGTCACCGCAGTAGTTTTATCACACCATCTATCTAATAATGCAGTCATTTTATAACGCCATCTATCTAATAATGCAGTCGTTTTATCACGCCATCTATCTAATAATGCAGTCATTTTATCACACCATCTATCTAATAATGCAACTATTTATCACACCATCTATCTAATAATGCAGTTGTTTTATCACACCATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCTAATAATGCAGTCGTTTTATCACACATCTATCTAATAATGCAGTCGTTTTATCACACCATCTATCCAATACTAACTACCTACTTTAGCAGGTTAGCTACGTTGCTTATGACTTCACTCTGTATGCCTTACAGtactgtagtaaaaaaaaaaaactaaatcatGGCATGTTATGATATCAGGTCAAAATGTCATAATATTtagaccaaaccctaaccctgacctatATACACCTTCATCTTTACCTTTGTATGTATTTCAGGAAAATAATCCCATCAAACTGTTACTTGTATGCAAAAAAAAGGAACAGTAGTTGCATGTTAAGCTCACACAACGTATTACATCATATGAAAATGTGTTGATTCGCGCAATAGCATCAAGAACACGCTTATTAATAGAAAGCAATCAAAAGAGGAAAGGACAAAGTGGCACACCTCTTTGTACCGTTATTGATTGAAGCGTTATTCCAACATTTAGCTGTCGGTGGCCTTGCATGGTATACAGTAGTGTGCCGAAACAATGAAACACTGGTATCGTGTATCAGAACATGTAGGGCAGATAGTTCTAGTGACTCTCACATTTCTCTCGTACTGTAGTTCTTTTAATTCCTTTCCATGCATTTGATATGGACATAACTCAATTGGATTTAGGAATTTTTTGATAAACGTTTAGTTAATGCCATCAATGAATTAACAAATGAACTATTACATTATCACACTTTAGGTATAGTTTATACTATGATATGTATTTATAAATAAACCCACATGCATGCtacacttcaaatatgaacaTTTATATTATCAGCGGTTATACAAACAATGACCATGCAGAAATGGCATTGGATATATTGAGTTGTTCAACACTGCAATTAACTGTTTCTTGAAAtagttcccacatttgctgag

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570000.2 False 3776 mRNA 0.43 1 82102024 82105799
TU1710472 True 1370 lncRNA 0.36 2 82104287 82105723

Neighbor

gene id symbol gene type direction distance location
LOC110494705 LOC106566037 coding upstream 38165 82041470 ~ 82063859 (+)
LOC110494703 LOC106566038 coding upstream 54739 82037573 ~ 82047285 (+)
LOC118940161 NA coding upstream 75399 82024067 ~ 82026625 (+)
LOC110495197 NA coding upstream 174103 81926651 ~ 81927921 (+)
LOC110494701 LOC106566040 coding upstream 190240 81904768 ~ 81911784 (+)
LOC110494708 LOC106566034 coding downstream 46372 82152171 ~ 82155889 (+)
LOC110493273 LOC106566076 coding downstream 113142 82218941 ~ 82220659 (+)
LOC110494711 LOC106566069 coding downstream 120979 82226778 ~ 82233962 (+)
LOC110494713 LOC106566029 coding downstream 158261 82264060 ~ 82275994 (+)
LOC110494715 tead3 coding downstream 171551 82277350 ~ 82353407 (+)
G1496267 NA non-coding upstream 21429 82080396 ~ 82080595 (+)
G1496265 NA non-coding upstream 24255 82077562 ~ 82077769 (+)
G1496262 NA non-coding upstream 26334 82074637 ~ 82075690 (+)
G1496261 NA non-coding upstream 34886 82066740 ~ 82067138 (+)
G1496277 NA non-coding downstream 373 82106172 ~ 82106654 (+)
G1496276 NA non-coding downstream 958 82106757 ~ 82107380 (+)
G1496279 NA non-coding downstream 2246 82108045 ~ 82108245 (+)
G1496280 NA non-coding downstream 7745 82113544 ~ 82113808 (+)
G1496330 NA non-coding downstream 19148 82124947 ~ 82125497 (+)
LOC110494698 LOC106566043 other upstream 268923 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 499867 81432188 ~ 81602161 (+)
G1495362 NA other upstream 763861 81337017 ~ 81338163 (+)
G1495346 NA other upstream 808098 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2716587 79382417 ~ 79387551 (+)
G1496351 LOC106566032 other downstream 57407 82163138 ~ 82169750 (+)
G1497918 NA other downstream 1508466 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1774133 83879805 ~ 83890067 (+)
G1498583 NA other downstream 2020038 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2390130 84495929 ~ 84497398 (+)

Expression


Co-expression Network