LOC110494708 (LOC106566034)


Basic Information

Item Value
gene id LOC110494708
gene name LOC106566034
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82152171 ~ 82155889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570002.2
GTAAACCAACCGTCATTACATGTCCTGAACCAGGTTTTTGTTGAAGAGGTCATTTTTGGGTAGGATATCTCACCTAGTCAACACTTCGAAATCAACACATTTATCGGGAAGGGAACAGCAAGACAGTTAGTGAAAAAATTCCTATCATGGAGGTTGCAGAAAAGAAGATGCCCAAACAGGCCCAGCTGCTCTCTCTTGGCCGCAAGGACACCAGTCACCTCTTGGAAGTGTATGTGAAGCGCAGCATCAGTTTAAGTGACGGGACATGTGCGGACCAGAGGTCACCAACAAAGCCTCGGAAGTGGGTGACACTGTCAGAGAAACGCAGAAGAGTCCACCGGCATTCTATTGACTCCTTGGTCACCTTAGGGCCCAGCAAACTTGTCGATGGCGATGCCACCAGCACACCACCCGACGAGGGCTTTGTTATACCAAATGTGGCTCCTGTAGAAATCCCAGGGCCTGCTGATATTCCTGAGATTGATGCGTCTACTGAACTGGAGAATAAGTCtaaagagggaaagaagaggACCAAAAGGCCCTCTCTCTGGAAAAGTTTTCTGGGTTTCTTCTCGAAGAAGGGGAGTGACCAGAAAGATGAGCATGAGTCTGGTACAGAGACTGGTGGACAGTCGCAAGGAAACAAATCCATAAAAAAGCAATGGCGCTCCATGAGGAGACTACCTCTGAGAAAAATAAAGAGTGACAGCTTCAGAGGGTCTGTGAGGAGATCATCGGCTCGGAACAGGGCCAACACTACAGAAATAACTGGAGTTGAATCGGTTGTGAGTGTGGTGCTTACAGACTCGTACTATGAGAAAGTGTCAGAAGAGCTGGAGAAGATTGTgtctgaggagaaagagacagacacagcTTCTACAGATGAGGAAGTCATCAAAAGGATCATTGTTCTGATGAAGCAGCAAGGAGACGTCATTGATAACAAGCTGAAGGAGAACTCCAGCCTGAGCGCATTCTTCCAGAAGCTGTCCTACAGTACCTTCCAGCAGTTGGCTGATACGTACGTGGAGACAGAGACCCCTACAGGCCAGAGCCGCCAGACACCACACACTGTTGGGCCCGGGCCCGTCAACGCCCCGGAGCTGGTCAAGCTGGCCTTCACTCTGGACTTCACAGCCAGAGTGGCCTGTCTCTCCAGACAATCCACAGGACACATCATGGGCCTGGGCAACCGCTACTTAGAGGACCGCTTCACCCAGACACCAGAGGTTAATCCAGATCAGACGCTACATAACCAGGATGGTCCTAATCGTTGATGCACCACCACATGCAAATGAGACCAACTAGTGCAGGGGAAAGTAAACATACTCAGTACTGTAATAACACATAAAGTGTTCCTTGGGACACAAATAAAACCCAGAGGAAGGTCACCTAGGGAACACCACTTATGGTAGTCCTTGTACCAGTAAATCTACACTAGGTCATCTAAATAACTACTATGTGTACAGGTTAGTAAGTAAAATATATCCACTTCTTACCACTTGTGGTGCAGCCTGTATTTACTTATCTGAATTAGTGATCGTAAGtactatgtagcctactgtaactgCATGTACAGGTACATTGGTTATTTCCCCACAGCAGGGTATCTTAATCCTGGTTCTGTGAActccaaggggtgcacatttttggtTTTGCCCTAGCAATACACAACTGATTTCActttgatgatgagttgattagtGACATGAtgtgtgtagtgctagggtaaaAACTCAAATGTGCACCCCTTTTGAGTCCTCAGAACCAGGACTAAGAAACATGCCCCTACAGTAACTCTAGAGTAATGCATTGTTTCTGGGGATTCTACTTATGACACGTGACAAAATAAGAAAACCAAGCTATTGATCCAAACTATTTATGTAGCAATATTTCCAGATGGTAGAAATATATTTTCTCTAATactgtggtcctgtgtggctcagttgttaGTGCATGATGCTTGTAACACCAAGTGTCAATTCCCACTGGAGACACCCATATGTGAAACGTAAAcgcgcatgactgtaagtcactttggataaaagcgtctgctaaatggtatatatTATTTCTGCAATATCAATGTTTTACAGATTTTTTTAGAATGCACTTTACAAAACTTTATCTGGCTATGTAATAATGCAGTGCAATGTCCTGCACTTTACACAGTGCACTTGTATTAGTACAATTACATGAAAACCGCAGCATACTTCTGTTAACTTTTTTTATTAACTATTATTGTTATTGGCAGTGCAATCTTTAGTTTCATCATTGTTTACCTGTTTTGCTTTTCAGTCTAAGGATGAACAACTGCTGATGAACAATATGACATTTATATAGATGTGTATGCTGGCATTCACACTATTTGTTACATGAAtaaattatgtttttgttaaAAAGCACCACTTCTACTGA

Function

NR:

description
uncharacterized protein LOC110494708

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570002.2 True 2418 mRNA 0.44 6 82152171 82155889

Neighbor

gene id symbol gene type direction distance location
LOC110494706 LOC106566035 coding upstream 46372 82102024 ~ 82105799 (+)
LOC110494705 LOC106566037 coding upstream 88312 82041470 ~ 82063859 (+)
LOC110494703 LOC106566038 coding upstream 104886 82037573 ~ 82047285 (+)
LOC118940161 NA coding upstream 125546 82024067 ~ 82026625 (+)
LOC110495197 NA coding upstream 224250 81926651 ~ 81927921 (+)
LOC110493273 LOC106566076 coding downstream 63052 82218941 ~ 82220659 (+)
LOC110494711 LOC106566069 coding downstream 70889 82226778 ~ 82233962 (+)
LOC110494713 LOC106566029 coding downstream 108171 82264060 ~ 82275994 (+)
LOC110494715 tead3 coding downstream 121461 82277350 ~ 82353407 (+)
LOC110494716 LOC106566027 coding downstream 235554 82391443 ~ 82403512 (+)
G1496333 NA non-coding upstream 25166 82126669 ~ 82127005 (+)
G1496330 NA non-coding upstream 26674 82124947 ~ 82125497 (+)
G1496280 NA non-coding upstream 38363 82113544 ~ 82113808 (+)
G1496279 NA non-coding upstream 43926 82108045 ~ 82108245 (+)
G1496276 NA non-coding upstream 44791 82106757 ~ 82107380 (+)
G1496351 LOC106566032 non-coding downstream 7249 82163138 ~ 82169750 (+)
G1496443 NA non-coding downstream 68776 82224665 ~ 82224904 (+)
G1496464 NA non-coding downstream 90496 82246385 ~ 82246616 (+)
G1496466 NA non-coding downstream 92313 82248202 ~ 82248401 (+)
G1496471 NA non-coding downstream 103563 82259452 ~ 82259693 (+)
LOC110494698 LOC106566043 other upstream 319070 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 550014 81432188 ~ 81602161 (+)
G1495362 NA other upstream 814008 81337017 ~ 81338163 (+)
G1495346 NA other upstream 858245 81293440 ~ 81293926 (+)
tusc2 tusc2 other upstream 2766734 79382417 ~ 79387551 (+)
G1497918 NA other downstream 1458376 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1724043 83879805 ~ 83890067 (+)
G1498583 NA other downstream 1969948 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2340040 84495929 ~ 84497398 (+)

Expression


Co-expression Network