LOC110494713 (LOC106566029)


Basic Information

Item Value
gene id LOC110494713
gene name LOC106566029
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82264060 ~ 82275994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570008.2
ctgtaggtgtcctggagggcaggcagtgtgcccccggtgatgcgttgggcacaccaataataataatggcACAAACCAACCTCTGCTGGGATGTGTTCTGGAGAGAGCAATTCTATAGATATACATTTTGTAGAACAGACATCACACTCTATCATGAAGAATAATAAATACTGTCAGCTCTATTCAACACAATGTAATTTCTGTCTTGCCAGAATGAGTGTCTGAGTAAATTAACTATTAAAAAGTGTCATGCTATTTCAAAATGTATTCCACTGGTCTCAAGATGAGTCCACTCCACAGAAGGTAAAAGTCCACCATAACAAAAACCACATCTAGGCAGCTGGGTGTGCCTTTTTTGTCCATTGTTAAGACACTAGCTGTTCATCTACATGTCTATTTGCGCCACTTTTTTTGGTCATGTGAGAATAAATTGTTGTGTCCGAGACAAATTTGGGTGGTTATGAGTCACATCGACCATTACATCCAGGAGGGGGGTGTCAAGATATATATAGTGGACCTGTGCTTGTCCTCTGTGTACTCATAACATACTTCTTACCCCTAGTCCCACTCCATGTTGGTTCGTCCTGTTgacgtgtctctgtctctgaagaACAGATGGCTTTACACATAAATCCTATTAGCAACTTTCTGCTGATGGTGAACCATTCAGTTCAAGGCTCCTCACTCTCTTATTTAACCTCCATTGTGTTGAATTGCCTCATTTTGTCTTTCTTTTTACTAAGAACGTTTTTGGTAAAGAGGAGTTTGTAGTTTATTAGAGCCGAAGTCACTGGCCACACCATGTCTGCAGAGAAGAAGCCAAAGAAGAAGAAGGCAGAGACAGCGAGCTCAGCCACCAATGGTGCCGACGCAAAGCCCAAAAAGACCAAGAGCAAGAAGAGCGATGACCTGTCTGGAGAGGAGAGTCCTGCAGTTCAAAATGGAAAAAAGGTAAAGAAAAAGAAAGCAGATGAAGAAAAAactgaaaaagagaaagagaaagggaaagggatagaaaaagagaaagacgagccaaagaagaaaacaaaaagtgTGCCAAAGAAAAAGAAAGGTTCAGATACAGAAGATGACGACGATGATGATGAGGAAGAGACTCCACAAAAGAAGACAAAGAAAAAGACCACGAAGGAAGGTTCTGAAAAAGATGGCAAAGATGGCAAAGAGAAGAAATCCAAAGCTAAAGATGACAAAGAGTCTGacaaaaaatctaagaaagacaCCAAGAAAAAGGAACCAgcttctctgttctctgtaaaTGGAGATAAGGATAAGTCAGACTCCAAGAGCAAGAAGAAAGCCAAATCAGATAGTGAAGACAGCGAACCAGAAACCAAGTCCAGCAAGTCAAAATCAAAGAAGAAGGAGAACGCCAACCCAGCATCCATGTTCTCAGCAGGGGGGGAAAAGGACAAGGACAAAGACAAGGACAAAGACAaggacaagaagaagaagaagaaagCCAAAGCATCAGACAGTGATGATTCTGACTCCGAAGCAGAAAAAGGAAAAAagaaaaagggaaaagggaagaaGAAAAAGgaggagaggcctccgTCCCCGGACATTGAGTTTGACAGCCTGGAGGAGTTTGTTCTGCAGCCAGCCCAGCAGGGGGTGACTGTCAAATGTAAGGTGACCCGGGACCAGAGGGGCTTGGACAAAGGCCTATACCCCACATACTATCTCCACCTGGACAATGAAAAGAAGGTCTTTCTACTTGCTGGGAGAAAACGAAAGAAAAGCACAACCTCCAATTACCTTATCTCCATAGACCCCACAGACTTGTCTCGGGGTGGAGAAAATTTCATTGGAAAGTTGAGGTCCAACTACTTGGGCACGAAGTTCACAGTGTTTGATAATGCACTGCACCCAGACAGAGCTCTACCAGACATGTCCAACGCTCGCCAAGAATTAGCAGCCATTATTTACGAAACAAATGTCTTGGGAATGAAGGGTCCCAGAAGGTTGACCGTTATCATCCCAGGGATGGGCAAGGACAGTGAACGAGTACCCATCCGACCTCGCAGTGACAACGATGGTTTATTGATGAAGTTCCAGAATAGAAAGTTGGACAATCTAATCGAGCTCCACAACAAGACCCCCACGTGGAATGAGGAGACGGCGTCCCATGTGCTGAACTTCAACGGCAGGGTCACACAGGCCTCCATCAAGAACTTTCAGATCGTCCACAGCAAGGATTTGGACTATATTGTGATGCAGTTTGGACGAGTAGCAGACGATGCCTTCACTCTGGACTATAGCTACCCTATGTGCGCAGTGCAGGCCTTTGCCATCGCTCTATCAAGCTTCGATGGCAAAATAACCTGTGAATAAGAGGGAATCATTTAGGCTCTGGTGCCTCCTCAAGCTGCTGCAACTCGTTATTGGCATACAGATGCCAACTACCAGAAAGAAGAATTTTCTTCACCATTACTCAACATCAGTGCAAGGTACATGGAAGGACGGAAGTCCTAGATGGAATGGGGGTCCAAGTGCATTTCATATCACATGGACTGCCTCGggattgttttgtttgtttgtgtctcaTTGCAATGATAATCATGAGCTTTTCTGGGAACAAGATTATGTTGACCAATTGGAGATCCTTGAGTGCAGTGAAGGACGTGAGGGGATGCTGATGCACCATGCAAGTCTGAGCACTGGAGCTTTGGTGCTTTGGCATTACACCATTTCAGTGTAGGGGGATGTGGACCAATTGGGGGATGAAAGTGACATCTGAAGAGTGAAAGCCTATTTTCCACCTACATCAATGCTTTTATAGCATAGTACATGTCCGATATTCGTTCATTCTGTTGCGTTTAATTTGGAATACAAATCCAGTAATGTGTCGCTAAAAAATCTATCTATtggtaaaaaaatgtatatattggtAACACAAAACTGTGTCTACGTGGACTTATAGAAAATGAATTTAAAAACATGTCAAAGTATATTTATTTAGGCCTACTTTTTCTTATTATTTTTAGGGTTACATTTGTTTCCATGCATTATTTGTGGTATTTCCAGATTATGAAATTGACTTAATTTTACAAATTAGAGGTTTCATTGTGAACAGTCATGAGGCAGAGGTATAAGGCAATATGCTTGTACCATGTGACTGTGGGCAGTCACAAGTATTTCTCTAAACATCTCATTTGCTGTTCTCATTCCACTCAAGTGACAATTTTGATGTTGTTCTGATACCTGCCTTTTTAAGTTATATGTTCTCTCTTCGGCTAGATTCTGTCTTTGTATGAATCGTGTGGACAAGAGCCTTATATTGACAGATATTGACAAATATAAGGCACTGATGTGGACCATTGTTGTTTTGATAAGGATAGTTAATATATGTTCCAAAGGTAAACAATGCATTTCAGTCTCTTGTGAACTTCTCTTGAATGAAAGTCAAAGTGCAAGCTTGAAGATAACATGCTCAATAATGAATTAATCTGCAAATAAAATATGACATGTTTAAAATGAATTCTTACAGGA
>XM_021570007.2
gtaggtgtcctggagggcaggcagtgtgcccccggtgatgcgttgggcacaccaataataataatggcACAAACCAACCTCTGCTGGGATGTGTTCTGGAGAGAGCAATTCTATAGATATACATTTTGTAGAACAGACATCACACTCTATCATGAAGAATAATAAATACTGTCAGCTCTATTCAACACAATGTAATTTCTGTCTTGCCAGAATGAGTGTCTGAGTAAATTAACTATTAAAAAGTGTCATGCTATTTCAAAATGTATTCCACTGGTCTCAAGATGAGTCCACTCCACAGAAGGTAAAAGTCCACCATAACAAAAACCACATCTAGGCAGCTGGGTGTGCCTTTTTTGTCCATTGTTAAGACACTAGCTGTTCATCTACATGTCTATTTGCGCCACTTTTTTTGGTCATGTGAGAATAAATTGTTGTGTCCGAGACAAATTTGGGTGGTTATGAGTCACATCGACCATTACATCCAGGAGGGGGGTGTCAAGATATATATAGTGGACCTGTGCTTGTCCTCTGTGTACTCATAACATACTTCTTACCCCTAGTCCCACTCCATGTTGGTTCGTCCTGTTgacgtgtctctgtctctgaagaACAGATGGCTTTACACATAAATCCTATTAGCAACTTTCTGCTGATGGTGAACCATTCAGTTCAAGGCTCCTCACTCTCTTATTTAACCTCCATTGTGTTGAATTGCCTCATTTTGTCTTTCTTTTTACTAAGAACGTTTTTGGTAAAGAGGAGTTTGTAGTTTATTAGAGCCGAAGTCACTGGCCACACCATGTCTGCAGAGAAGAAGCCAAAGAAGAAGAAGGCAGAGACAGCGAGCTCAGCCACCAATGGTGCCGACGCAAAGCCCAAAAAGACCAAGAGCAAGAAGAGCGATGACCTGTCTGGAGAGGAGAGTCCTGCAGTTCAAAATGGAAAAAAGGTAAAGAAAAAGAAAGCAGATGAAGAAAAAactgaaaaagagaaagagaaagggaaagggatagaaaaagagaaagacgagccaaagaagaaaacaaaaagtgTGCCAAAGAAAAAGAAAGGTTCAGATACAGAAGATGACGACGATGATGATGAGGAAGAGACTCCACAAAAGAAGACAAAGAAAAAGACCACGAAGGAAGGTTCTGAAAAAGATGGCAAAGATGGCAAAGAGAAGAAATCCAAAGCTAAAGATGACAAAGAGTCTGacaaaaaatctaagaaagacaCCAAGAAAAAGGAACCAgcttctctgttctctgtaaaTGGAGATAAGGATAAGTCAGACTCCAAGAGCAAGAAGAAAGCAGCCAAATCAGATAGTGAAGACAGCGAACCAGAAACCAAGTCCAGCAAGTCAAAATCAAAGAAGAAGGAGAACGCCAACCCAGCATCCATGTTCTCAGCAGGGGGGGAAAAGGACAAGGACAAAGACAAGGACAAAGACAaggacaagaagaagaagaagaaagCCAAAGCATCAGACAGTGATGATTCTGACTCCGAAGCAGAAAAAGGAAAAAagaaaaagggaaaagggaagaaGAAAAAGgaggagaggcctccgTCCCCGGACATTGAGTTTGACAGCCTGGAGGAGTTTGTTCTGCAGCCAGCCCAGCAGGGGGTGACTGTCAAATGTAAGGTGACCCGGGACCAGAGGGGCTTGGACAAAGGCCTATACCCCACATACTATCTCCACCTGGACAATGAAAAGAAGGTCTTTCTACTTGCTGGGAGAAAACGAAAGAAAAGCACAACCTCCAATTACCTTATCTCCATAGACCCCACAGACTTGTCTCGGGGTGGAGAAAATTTCATTGGAAAGTTGAGGTCCAACTACTTGGGCACGAAGTTCACAGTGTTTGATAATGCACTGCACCCAGACAGAGCTCTACCAGACATGTCCAACGCTCGCCAAGAATTAGCAGCCATTATTTACGAAACAAATGTCTTGGGAATGAAGGGTCCCAGAAGGTTGACCGTTATCATCCCAGGGATGGGCAAGGACAGTGAACGAGTACCCATCCGACCTCGCAGTGACAACGATGGTTTATTGATGAAGTTCCAGAATAGAAAGTTGGACAATCTAATCGAGCTCCACAACAAGACCCCCACGTGGAATGAGGAGACGGCGTCCCATGTGCTGAACTTCAACGGCAGGGTCACACAGGCCTCCATCAAGAACTTTCAGATCGTCCACAGCAAGGATTTGGACTATATTGTGATGCAGTTTGGACGAGTAGCAGACGATGCCTTCACTCTGGACTATAGCTACCCTATGTGCGCAGTGCAGGCCTTTGCCATCGCTCTATCAAGCTTCGATGGCAAAATAACCTGTGAATAAGAGGGAATCATTTAGGCTCTGGTGCCTCCTCAAGCTGCTGCAACTCGTTATTGGCATACAGATGCCAACTACCAGAAAGAAGAATTTTCTTCACCATTACTCAACATCAGTGCAAGGTACATGGAAGGACGGAAGTCCTAGATGGAATGGGGGTCCAAGTGCATTTCATATCACATGGACTGCCTCGggattgttttgtttgtttgtgtctcaTTGCAATGATAATCATGAGCTTTTCTGGGAACAAGATTATGTTGACCAATTGGAGATCCTTGAGTGCAGTGAAGGACGTGAGGGGATGCTGATGCACCATGCAAGTCTGAGCACTGGAGCTTTGGTGCTTTGGCATTACACCATTTCAGTGTAGGGGGATGTGGACCAATTGGGGGATGAAAGTGACATCTGAAGAGTGAAAGCCTATTTTCCACCTACATCAATGCTTTTATAGCATAGTACATGTCCGATATTCGTTCATTCTGTTGCGTTTAATTTGGAATACAAATCCAGTAATGTGTCGCTAAAAAATCTATCTATtggtaaaaaaatgtatatattggtAACACAAAACTGTGTCTACGTGGACTTATAGAAAATGAATTTAAAAACATGTCAAAGTATATTTATTTAGGCCTACTTTTTCTTATTATTTTTAGGGTTACATTTGTTTCCATGCATTATTTGTGGTATTTCCAGATTATGAAATTGACTTAATTTTACAAATTAGAGGTTTCATTGTGAACAGTCATGAGGCAGAGGTATAAGGCAATATGCTTGTACCATGTGACTGTGGGCAGTCACAAGTATTTCTCTAAACATCTCATTTGCTGTTCTCATTCCACTCAAGTGACAATTTTGATGTTGTTCTGATACCTGCCTTTTTAAGTTATATGTTCTCTCTTCGGCTAGATTCTGTCTTTGTATGAATCGTGTGGACAAGAGCCTTATATTGACAGATATTGACAAATATAAGGCACTGATGTGGACCATTGTTGTTTTGATAAGGATAGTTAATATATGTTCCAAAGGTAAACAATGCATTTCAGTCTCTTGTGAACTTCTCTTGAATGAAAGTCAAAGTGCAAGCTTGAAGATAACATGCTCAATAATGAATTAATCTGCAAATAAAATATGACATGTTTAAAATGAATTCTTACAGG

Function

NR:

description
tubby-related protein 1-like isoform X1

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570008.2 False 3513 mRNA 0.42 13 82264060 82275994
XM_021570007.2 True 3513 mRNA 0.42 13 82264062 82275993

Neighbor

gene id symbol gene type direction distance location
LOC110494711 LOC106566069 coding upstream 30098 82226778 ~ 82233962 (+)
LOC110493273 LOC106566076 coding upstream 43401 82218941 ~ 82220659 (+)
LOC110494708 LOC106566034 coding upstream 108171 82152171 ~ 82155889 (+)
LOC110494706 LOC106566035 coding upstream 158261 82102024 ~ 82105799 (+)
LOC110494705 LOC106566037 coding upstream 200201 82041470 ~ 82063859 (+)
LOC110494715 tead3 coding downstream 1356 82277350 ~ 82353407 (+)
LOC110494716 LOC106566027 coding downstream 115449 82391443 ~ 82403512 (+)
LOC118940498 LOC106566024 coding downstream 185693 82461687 ~ 82518805 (+)
LOC110493275 LOC106566024 coding downstream 257527 82533521 ~ 82636002 (+)
LOC110494718 LOC106566023 coding downstream 360391 82636385 ~ 82661644 (+)
G1496471 NA non-coding upstream 4367 82259452 ~ 82259693 (+)
G1496466 NA non-coding upstream 15659 82248202 ~ 82248401 (+)
G1496464 NA non-coding upstream 17444 82246385 ~ 82246616 (+)
G1496443 NA non-coding upstream 39156 82224665 ~ 82224904 (+)
G1496347 NA non-coding upstream 52421 82136478 ~ 82211639 (+)
G1496455 NA non-coding downstream 440 82276434 ~ 82276887 (+)
G1496453 NA non-coding downstream 66607 82342601 ~ 82343215 (+)
G1496529 NA non-coding downstream 140256 82416250 ~ 82416503 (+)
G1496535 NA non-coding downstream 150201 82426195 ~ 82426410 (+)
G1496537 NA non-coding downstream 151677 82427671 ~ 82427927 (+)
G1496351 LOC106566032 other upstream 94310 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 430959 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 661903 81432188 ~ 81602161 (+)
G1495362 NA other upstream 925897 81337017 ~ 81338163 (+)
G1495346 NA other upstream 970134 81293440 ~ 81293926 (+)
G1497918 NA other downstream 1338271 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1603938 83879805 ~ 83890067 (+)
G1498583 NA other downstream 1849843 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2219935 84495929 ~ 84497398 (+)
G1498912 NA other downstream 2240123 84516117 ~ 84567678 (+)

Expression


Co-expression Network