LOC110494716 (LOC106566027)


Basic Information

Item Value
gene id LOC110494716
gene name LOC106566027
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82391443 ~ 82403512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570015.2
CTGAGGAGAAGTAGGCTACCTGTCAGAGCAGGCAATGATGGGTCTGAGCACTGACTTCATACGGGTTTGAGTCATTTACATTTTATAGTCTTCTAAAGAATCACTGGACAGTAGCTGCACAGGAAGACCAATCATTACTAGTAATATGAACATTCATATCAGACACACCAGACACATATTACTTATAATGGGCGTGGTTCATTGTTGAGGGCTGGGCAATCGTGCGCATTTCATATATTAGATTGCCTGTACAAACGCCACCTGTATGGAGCAAGGTATAGTAGGCTACGAACCATAACACTTTGGATTTACAACTTCAAACAGACCTTCATGATGACAATGGACCCGTTGAAATCGGCCATATCCATTGGGAATGTGGAGGAGACATCTCTTGCTTTGCCGTCCGATAACAAACTTAGGTCCAAACAGCAGCGTGTCTTGGATCAGGTGCAAACCATTAAGAGGGGCAAGTCGAAGTACAGTAAAAATGGATCTTTATCGTCGCCAACGAAGTCGCCAACGAGTCCTATGTACGTCAGCGTATTCACTGACTCCATTAAGTCACCTACCAGTCCCAATGGAATTGTCTTCTCGAATGGTACAAATGGCCTCTCAAGAACGCTTAGCCATGAGCAGAGCACCAAGCGAATGGTACTGTCCTCCAAGGGATCTACTGTTCAGAGAAACATGAGCAGCTCCAGCCAGTGGGAGAGACGATTACCTCTCAGTCCCCCCATAGCCAGGGGTCAGCGCAACAGCAGCCGCAGTGTGCCTGATGCGgaccccttccccttccccaccaccacacagcGCCCTGCCCAGGCCCCGGCTTCAGCCCTACAGCAGTTTCAGTCCTCAGCCCCCGCCCGACAGCTCCAATCCAACAGATCcagcttcttccttactgagagGGGTAACAGCCAGTTCATCTCCAATGGCAATGGCCCCTCTCAGGTCATTGTCAACAGCAACGATGTGCAGAAAAGGCACAGCCAGTTGATTGGCACCCGTCAGACGAAAAGCAGCGGCCAGATTACCAGCAGCCAAACTCGTATTGAGAGGGCACCATCGAACCCCTCCATGGCCGAGCCCAAGATATCAGTGGTCAAGAGCAAGATTGAAGCAGGGATGAATGATTATGGCCAGCTTGCTGATATTACCATGGCGGAGGCGGTGCAGTACCTGTCCAGTGGAGATGTGAACTACCAGCACTATGGCGCCTCATTCATCCAACACTCTACCTACTCAGAGGACAAGGCCAAGCAGGAGGTGTTGCGGCTCAAAGGAATCCCTCCTCTGGTGAACTTGCTGAGGAGTCCCAGTCCCCAGGTCCAACAGACAGCCTCGGCCGCCCTGCGGAACCTTGCCTTTAAAGATGCGGGCAACAAGGAGGAGGTCCAGCGCTGTGGGGGCATCACTGAGTCCCTGGCCCTGCTCCGAGACACAGACTCTACCGAGACACAGAAACAACTCACAGGTCTCCTTTGGAACCTGTCGTCTGCAGACAGTCTGAAGCCAGAGCTTGTGCGTAGcgctctgcctgttctgactgaGACTGTGGTAGTACCTTACACAGGAGGAGTAGATGAGACCAACAAGAACCTGGACCCAGAGGTCTTCTACCATGCTACAGCATGTCTACGAAATCTGAGCTGTGCGACGCAAAGCAACAGGCAGGCCATGCGTAACTGTCGAGGCCTCATCGACTCTCTGGGCAGTTACGTCCAGGAGTGTGTAGCATCAGAGAGGCCAGATGACAAGTCTGTGGAGAACTGTGTCTGTGTCCTGCACAACCTGAGCTTCCAGCTGGAGAGTGAGGCCCCGGCCCTGTTCAGCCGGATCACTGCCCTGGCCGGGACCATCAGCCGGGCCAACGCCTCAGCTGAGACCGGCCCCATCGGCTGTTTCAGCCAACAGAGCAGCAAGGTCCAGGAGCAGGAGAATCACTTTGACTACCCCGTGATGGAGGAACAGCATCCTAAAGGAGCGGGCTGGCTCTTCCACTCCAAGACTAtgcagagttacctgtctctgcTGAGGTCCAGCCAGAGAGAAGACACCCTGGAGGCCTGCTGTGGAGCCCTGCAGAACCTCACCGCTAACCAAGGCATTGTTTCTAGAGTGATGAGCCAGACCATTGTCCAGAAGCTGAACGGCTTGCCTGAAATCTCTCCCCTGCTGCAATCCTCCAACCCCAGCCTACAGAAGACTGCTGTGGCTTTGGTGGGAAACCTAGCCAAGAACCAACGCCTTCAGAGCATCATGGCCCGACAGACCTTCCCAGAGCTGGTTGGCATCCTCAGCTCATGGACCAAGGAAGGGACAGAGTCTGACGACACCCTGGCTATGGCGTGCCAAACCAGCCACAGTCTTCTGATGAAGGAGCCTGAGCTGGGGAAGCGCGTGCTGAGCAACAACCTGGTCAACTCACTCAACGACCTGAGCAAGAACAGGCTTTTCCCAAAGGCAAGCAAAGCTGCAGGTGTGCTCCTCTACAGCCTCTGGTCAGAGAAGGACATACAGAGTTTCCTAAAAAAGCAAGGGATGAATAAGGGTTCCTTTGTGAATGACATCACCAGCGTGGCTCACAGGTCTGTGCAGGTCGTTGAGTAACAAGAAGACAGCTGGCAGGGATCTCACATCACCTCCCAATGTACTTATGGACTATACACCTACTACAGCACATGTCAGACTGTGTCCAGTTTATATGGTTACTAAATGTTTACTTTAGATTTCAAAACACATTAAAGTTAGTCAGATTGTCCATCTGTTATGTTAAATTGTCTTATCCATCTTACGTCCGTATAAAGGTTAGTAATCTTGTATTTCTGGGGGGTTTCTGGGCTCTTTTGTTTTTGCTAgaaatcatttgtttttcttttGCATTGTAAACATGTAGATCCTGTTTGGTAATGGCTGGTTACTGGGATTGCTTGAATAGGCCCCCTTAGCTTGCATGACAATTATGGTTGATTACCCAAAAGCTACTGAAAGCTAATGATCAGATGTTGTAACTCATTTCATTAGATTTATTAAGCTAGAATAGTCCACTAAGTAACAGTTGCCACAGCATACACAAAGcacatcacaaaaaaaaaaaaattgtgattGTCACTAATGTTTAACCTACTATGTTCTTCTGTATAGTACAGCCATACTGAAATCATTTTTGATACATGTATCCTTTTGTCCATGCCTGTATGGTTTAGATCTCCCAATATATACTGTTGTTTTTTCCATTTTTGTCCATAAAATACTGtacaattttttaatttttttattttggaaatctgttcccaagtattcccatgaataatagagagacatacagtatttgattgtatACAAACATAAGCAAGGTATGAAATTATTCCGTTTTTATTtgatctgtttgggcttcttgcggtcagtTTTCTGTCTATGGCTGAATtgagttttttgtttgttttagtcaCCTCTGTGTATTTGAATTCAGATGATGTATTGTATGTATCGCCAAAGACACTTGCTATTATTCTGTTTGTACAACCTCATTGGATAATGGATAAAGAATATTTTCCAAACA

Function

NR:

description
plakophilin-1-like

GO: NA

KEGG:

id description
K10387 PKP1; plakophilin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570015.2 True 3565 mRNA 0.48 13 82391443 82403512

Neighbor

gene id symbol gene type direction distance location
LOC110494715 tead3 coding upstream 38036 82277350 ~ 82353407 (+)
LOC110494713 LOC106566029 coding upstream 115449 82264060 ~ 82275994 (+)
LOC110494711 LOC106566069 coding upstream 157481 82226778 ~ 82233962 (+)
LOC110493273 LOC106566076 coding upstream 170784 82218941 ~ 82220659 (+)
LOC110494708 LOC106566034 coding upstream 235554 82152171 ~ 82155889 (+)
LOC118940498 LOC106566024 coding downstream 58175 82461687 ~ 82518805 (+)
LOC110493275 LOC106566024 coding downstream 130009 82533521 ~ 82636002 (+)
LOC110494718 LOC106566023 coding downstream 232873 82636385 ~ 82661644 (+)
LOC110494719 LOC106566022 coding downstream 265310 82668822 ~ 82717448 (+)
nudt3 LOC106566013 coding downstream 843218 83246730 ~ 83264337 (+)
G1496453 NA non-coding upstream 48228 82342601 ~ 82343215 (+)
G1496455 NA non-coding upstream 114556 82276434 ~ 82276887 (+)
G1496471 NA non-coding upstream 131750 82259452 ~ 82259693 (+)
G1496466 NA non-coding upstream 143042 82248202 ~ 82248401 (+)
G1496464 NA non-coding upstream 144827 82246385 ~ 82246616 (+)
G1496529 NA non-coding downstream 12738 82416250 ~ 82416503 (+)
G1496535 NA non-coding downstream 22683 82426195 ~ 82426410 (+)
G1496537 NA non-coding downstream 24159 82427671 ~ 82427927 (+)
G1496548 NA non-coding downstream 44638 82448150 ~ 82448503 (+)
G1496552 NA non-coding downstream 54755 82458267 ~ 82459046 (+)
G1496351 LOC106566032 other upstream 221693 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 558342 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 789286 81432188 ~ 81602161 (+)
G1495362 NA other upstream 1053280 81337017 ~ 81338163 (+)
G1495346 NA other upstream 1097517 81293440 ~ 81293926 (+)
G1497918 NA other downstream 1210753 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 1476420 83879805 ~ 83890067 (+)
G1498583 NA other downstream 1722325 84125837 ~ 84174177 (+)
G1498913 NA other downstream 2092417 84495929 ~ 84497398 (+)
G1498912 NA other downstream 2112605 84516117 ~ 84567678 (+)

Expression


Co-expression Network