LOC110494720 (LOC106566021)


Basic Information

Item Value
gene id LOC110494720
gene name LOC106566021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82719144 ~ 82729139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570022.2
ccctctctccagatcCCCTCctaccccttctgtctctctgctgttgcATCATGCACACACTAACAAGGGGATACTGGCAGCCATGTTTGTGAAGCTGTGAAATGAGATTTAAAAATGacgaattacatttttttattatctTCATAACAAATTCCAATGTCCAACAAATCCATATTAGTCCATAGCTCAGACCAAAGGGTGAttaaagaaagagggggaaagagagacagtgaagcagaaagagagagagcgagaggctgtCAGGCAGAATGAGAGCCGAGTGCTTTACTTTGAAGTTTTCATTTTTGTTGAATCACCACAGTCCAGAGAGTGCTCTCATTAGCGACACTGCTGTCAAGTCCCAGGCAGTGTCCCTCCCCATACAGTCTACAGCACCGCCCAGCGcccaccctcttcctcctccacagcTCCATCCCTTTTGCTACTCACCTTCCACTCATCTCATCTCAGGATCACTCAACATCACCTGGAGTGAGATCACACTCCTGACCACAGCTATTTCTGTCTCATTAGCACTCTATAATTTTGATCACAATCCTGACTCTGTCCCTTCACCACCTTCATTCACATCACAGGGATTTTAACTGTGTGTCACTGGATTGTTCATGCAGTAGTCTTTTGGAATCAAGTTGGTTGGACCGGACCGCTGGACTCCACATGAACCTCATGCAGTGGAGATTATCCTGCAGCGATGTCATCTCACCTCTCCCCCCGCAACGCAAAGGATCAGCCACGCACAAGAAAGTCATCCACTGATTTGTCTCCCGCTAAACCCTCGCCGACCTCCAGAAGCCTCAAACATGAAAGAGTGTCCAGACTGGACTCGTCTGGTGCTTACGACCGAGAGGCCTATGATGCTCGAAGGGAAAACAGAATGGCAGCGCGGAAAAAAgcagaggaggaggcagggtgcACTGACTATAAGAAGATGTACGAGGAGGCCTTGTCTACCAATGAGAGACTCAAGTCCAGGCTGCAGGGCAGCAAACAGGAGCTGGTATTGGTGCAGACTCAGCTGGAGAGAGTGACACAGAGAAAGATAACCATGACTGAAAGGTCCAATGAAAGGTCCATGCTTGAGACAGAAAAACGGgaAACACGTGTCCTGCAGAAGAAGATATCAGACATGGAAGATGAAGTGAAGGTCCAGACAGAGCTGAAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCTaagtgagaagaggaggaaatggaAGAGAGCAGGGGATGATACAGCTTTATTTCCCATGTTTACACCCACTTCTCCaaccccaccacccccaccaacacccccaccaacACCAGTAGTCTTCACACGCAGTTTGCATATTTGCACATTTTTTGTATTCATTTATGGATTGTTATAATGCATAATTATATAATCACAGCACATAATAATACCGTATGAATGTCTGCAAATGTTTAATCTATAAACTGATGTAACAGGTTATATATTATCACGTTTTGTATCACtatgtgacatttgaaatgtttttgttgtttttttttgtttactcCATCACATGAACAGTCTCCTTGTATAAGCCTTGTATAAGTTATTTATAAAGATTTTCTATGCTGCAA
>XM_021570023.2
acccctccatatctccctctctccagatcCCCTCctaccccttctgtctctctgctgttgcATCATGCACACACTAACAAGGGGATACTGGCAGCCATGTTTGTGAAGCTGTGAAATGAGATTTAAAAATGacgaattacatttttttattatctTCATAACAAATTCCAATGTCCAACAAATCCATATTAGTCCATAGCTCAGACCAAAGGGTGAttaaagaaagagggggaaagagagacagtgaagcagaaagagagagagcgagaggctgtCAGGCAGAATGAGAGCCGAGTGCTTTACTTTGAAGTTTTCATTTTTGTTGAATCACCACAGTCCAGAGAGTGCTCTCATTAGCGACACTGCTGTCAAGTCCCAGGCAGTGTCCCTCCCCATACAGTCTACAGCACCGCCCAGCGcccaccctcttcctcctccacagcTCCATCCCTTTTGCTACTCACCTTCCACTCATCTCATCTCAGGATCACTCAACATCACCTGGAGTGAGATCACACTCCTGACCACAGCTATTTCTGTCTCATTAGCACTCTATAATTTTGATCACAATCCTGACTCTGTCCCTTCACCACCTTCATTCACATCACAGGGATTTTAACTGTGTGTCACTGGATTGTTCATGCAGTAGTCTTTTGGAATCAAGTTGGTTGGACCGGACCGCTGGACTCCACATGAACCTCATGCAGTGGAGATTATCCTGCAGCGATGTCATCTCACCTCTCCCCCCGCAACGCAAAGGATCAGCCACGCACAAGAAAGTCATCCACTGATTTGTCTCCCGCTAAACCCTCGCCGACCTCCAGAAGCCTCAAACATGAAAGAGTGTCCAGACTGGACTCGTCTGGTGCTTACGACCGAGAGGCCTATGATGCTCGAAGGGAAAACAGAATGGCAGCGCGGAAAAAAgcagaggaggaggcagggtgcACTGACTATAAGAAGATGTACGAGGAGGCCTTGTCTACCAATGAGAGACTCAAGTCCAGGCTGCAGGGCAGCAAACAGGAGCTGGTATTGGTGCAGACTCAGCTGGAGAGAGTGACACAGAGAAAGATAACCATGACTGAAAGGTCCAATGAAAGGTCCATGCTTGAGACAGAAAAACGGgaAACACGTGTCCTGCAGAAGAAGATATCAGACATGGAAGATGAAGTGAAGGTATCTGTCCAGTTGCAATAATGGTCCAGACAGAGCTGAAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCTaagtgagaagaggaggaaatggaAGAGAGCAGGGGATGATACAGCTTTATTTCCCATGTTTACACCCACTTCTCCaaccccaccacccccaccaacacccccaccaacACCAGTAGTCTTCACACGCAGTTTGCATATTTGCACATTTTTTGTATTCATTTATGGATTGTTATAATGCATAATTATATAATCACAGCACATAATAATACCGTATGAATGTCTGCAAAT

Function

NR:

description
protein phosphatase 1 regulatory subunit 12B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570022.2 False 1638 mRNA 0.45 7 82719144 82729125
XM_021570023.2 True 1511 mRNA 0.47 7 82719308 82729139

Neighbor

gene id symbol gene type direction distance location
csrp1 csrp1 coding downstream 263291 82449709 ~ 82455853 (-)
LOC110494717 LOC106566026 coding downstream 275271 82430022 ~ 82443873 (-)
LOC110495198 LOC106566076 coding downstream 510533 82205435 ~ 82208611 (-)
LOC110493272 NA coding downstream 517164 82201505 ~ 82201980 (-)
LOC110494710 LOC106566032 coding downstream 549343 82163141 ~ 82169801 (-)
zgc:66479 LOC106566020 coding upstream 3819 82732958 ~ 82749658 (-)
LOC110493276 LOC106566018 coding upstream 41144 82770283 ~ 82800894 (-)
LOC118940110 NA coding upstream 73520 82802659 ~ 82808001 (-)
igfn1.4 LOC100194677 coding upstream 90682 82819821 ~ 82849981 (-)
LOC110494724 LOC106566017 coding upstream 126586 82855725 ~ 82873938 (-)
G1496921 NA non-coding downstream 57506 82629246 ~ 82661638 (-)
G1496844 NA non-coding downstream 193362 82525497 ~ 82525782 (-)
G1496838 NA non-coding downstream 200027 82518798 ~ 82519117 (-)
G1496831 NA non-coding downstream 212832 82506018 ~ 82506312 (-)
G1496830 NA non-coding downstream 214230 82504695 ~ 82504914 (-)
G1497072 NA non-coding upstream 34691 82763830 ~ 82766175 (-)
G1497090 NA non-coding upstream 60952 82790091 ~ 82790315 (-)
G1497552 NA non-coding upstream 140928 82870067 ~ 82870400 (-)
LOC110494726 LOC106566015 non-coding upstream 226371 82955510 ~ 83235227 (-)
G1497642 NA non-coding upstream 288765 83017904 ~ 83018198 (-)
G1496689 NA other downstream 473157 82235128 ~ 82245987 (-)
G1496390 NA other downstream 544292 82172469 ~ 82174852 (-)
G1495552 NA other downstream 1392031 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 1404829 81311747 ~ 81314315 (-)
G1498077 NA other upstream 876104 83605243 ~ 83605753 (-)
G1498442 NA other upstream 1253202 83982341 ~ 83982894 (-)
G1498522 NA other upstream 1321871 84051010 ~ 84057392 (-)
G1499671 NA other upstream 2491986 85221125 ~ 85223119 (-)
G1499684 NA other upstream 2557517 85251788 ~ 85288117 (-)

Expression


Co-expression Network