zgc:66479 (LOC106566020)


Basic Information

Item Value
gene id zgc:66479
gene name LOC106566020
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82732958 ~ 82749658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570024.2
GGGTGTTGCAGAGTAGAGAGAGCACAGTAGCATACCCTAATAAATCGAAGCACCACTTTATCTCGAGCAAGACGAGTGCCATCATTCTCCCTGTCTCATGTCTCCTGTGTACGTGAGTCTCTCTCCAGGTAACAAGGTATCCAAAATGACTAAGCGCAAATCAAAGACTGCCGCCAACTTCAAGCCAGAGCGCGAGGACAACTCTTTCTTAATAGAATCCCACCCAGTGTCCAAGTCGCGAAGAAGAGTAAATCAAGTTGCGCTGCCATGCATGTTGTTCCTTATGGTCGCGATTGGAGGGGCATCCGCGGGCTGGTTTTGCCTGCAACAGCAACAATCCATTGATCAGCTATCAGAAACGTTTAGGGCCATGCAAATAAGAATCACCAAATTTCAGCAGCAGATGGGCCTGAGAGACGCACAGATGAGATCAGGAGGTCTGATCGAGGAGAGGATACTGGCTTTGGAGGCAGCTCAGAAACAGGCCCAGCAGAAGGCGGAGGTTACCCTGGCAATGTCAGAGCAGTTGAAGAGCATCGACCTCAAATCACAGTTGTGGTCACTCCACAACGAGATGAACACCAGACTGGCTGAGTTCCAGAAGGTAGCCATCTCCTCCGCAGCCCTGCAGGCCATGATGAAAAACAAGAGCGATGACTTCGAGTCGGTCAAGGAGAGCGTGGCGGCCGTTTCAAGCTCCAACTCTGCGCTAGCAGTGAGCTTGGCGAGGATGACCAGCACAGTGGACAACGTCAAATCCAGTCtggacgagcaggtgtctacGGTGGACGGCTTGACGTCACAGCTGGAGGGACAGGTCACTGAGCAGAGGGAACTTAGAGAGTTTCTGAGTCTTCACAGGGTAGTGCTTCATAACAACCACCAGGAAGTGGGTGAAATCAAGGAGTTGCTGGAGGAATGGCAGGCCAAGAAGGCCCAGACTCTGGAGCAGCAGCTGCAGTTAGTGACCAGGACCCTGGATGAGCAGCACATCAGCTCCCAGAGCATGCACCCCCATCTCAAGAAGCAGCTGGAGGCTGTTCACAGCCAGCTGGTGAATGGTGGTCCACTCAGCCAAGAGGAAGTAGACTCCGAGGCGGCAGAGGCCTCGGAAATGGCAGAACGGGAGCATGAGGTAACAGAGGAAGAACCTgctgaggaggaggtagaggaggacttTACTGAGGAGGCAGTGAAACAGGAAGCTGAAGAGGAGGACGTTACTGAGGAGGCAGTGGAACAGGAAGCTGAAGAGGAGGAAATGGAGCAGGAGGAGTCAGTGGAAAAGGAAGTGACAGAGGAGCCAGAAGAACAGCTAGTTGTAGTGGAGTCATTGGAAGATGGTGTCACAGAAGAgcaactggaggaggaggagccaaaggatgaggaagaggagattGATGATGACAATGACTTCCCAGAGGACTGGTCTCCTGAGGAGCAATGGTAGAAGGAAGAAAAGGTTCAGGCACACGTTGCTGACTCTGGTATGGCTAGAGCAGACATTTTGACAATTGAAACATTACTGTATTGAAAGAAGTAGGAGGCCACTCAACCAACATGAGGCGTGGTGCATTGACAAAAATGTGATAATCATTGAAAAGATAAAGGCGCAATGCTAACTCACCATTAAAAACACTATTTTACTTAAGCAACTATTAATAGCCTGACAAAATTATGACGTAGGGGCCTATATGTACATGTCCATTCCCTCTGTATAATTTTTTTGATGAAAGTCATTGATGAAGGCCCGAAATGTGACATTTTTAATAGTCGCTTGAATAACATAATGATACAGTATGTCTTTAATGGTGAGCGAGTGTGGGCCATTTCCTTTTTAATTAATCATACTTTACTGCATTGCCAGAAATTAAATTACATTTGACCAAAATGGCGAGGTCTTATGGAAATATTAAAGATATATTTCTAAAGATAAAGATGAGTGCCTATTGAGGACCCACTCCTCAAGACCCACACCCTCATACAGGGTCTTTAGAGTTCACCAGGAATACTTCAGATAAAAATAAAGACTCTGTCAGTGCCAACTGTTAACAGTTGTCTGTACCTAAGTAAGCAGTCTGAAGTTTTCTGTTCTCTTTTTAAATATGAATTTCAGAGCAATAACATCCTTTTTTAAGATGAGTGACAAAAGCTACTTTCCAATTTGTTGGCAAAGCCGCAGAAGGTCCAAACACTTACCAGCTTGGTTATGAACTTATTTGATAATGTTTCAGTTGTAAATGTCCTTACTAAAAAGTTGTAAATCAAAATGTGTGTGATTATTTGGTTTTGATTtatgtaaatacattttcttAACTGTCCATATTATTGACCTAGCCTACATTCAGTAGCTGGGATTATTAATGGAGCCTCATTTTATTTCTGTCATGTTATAGATGTGACATTTTCAAACCTGCAAATTGCATCAC

Function

NR:

description
neurofilament medium polypeptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570024.2 True 2429 mRNA 0.46 4 82732958 82749658

Neighbor

gene id symbol gene type direction distance location
LOC110494720 LOC106566021 coding downstream 3819 82719144 ~ 82729139 (-)
csrp1 csrp1 coding downstream 277105 82449709 ~ 82455853 (-)
LOC110494717 LOC106566026 coding downstream 289085 82430022 ~ 82443873 (-)
LOC110495198 LOC106566076 coding downstream 524347 82205435 ~ 82208611 (-)
LOC110493272 NA coding downstream 530978 82201505 ~ 82201980 (-)
LOC110493276 LOC106566018 coding upstream 20625 82770283 ~ 82800894 (-)
LOC118940110 NA coding upstream 53001 82802659 ~ 82808001 (-)
igfn1.4 LOC100194677 coding upstream 70163 82819821 ~ 82849981 (-)
LOC110494724 LOC106566017 coding upstream 106067 82855725 ~ 82873938 (-)
igfn1.1 LOC106566016 coding upstream 124579 82874237 ~ 82912029 (-)
G1496921 NA non-coding downstream 71320 82629246 ~ 82661638 (-)
G1496844 NA non-coding downstream 207176 82525497 ~ 82525782 (-)
G1496838 NA non-coding downstream 213841 82518798 ~ 82519117 (-)
G1496831 NA non-coding downstream 226646 82506018 ~ 82506312 (-)
G1496830 NA non-coding downstream 228044 82504695 ~ 82504914 (-)
G1497072 NA non-coding upstream 14172 82763830 ~ 82766175 (-)
G1497090 NA non-coding upstream 40433 82790091 ~ 82790315 (-)
G1497552 NA non-coding upstream 120409 82870067 ~ 82870400 (-)
LOC110494726 LOC106566015 non-coding upstream 205852 82955510 ~ 83235227 (-)
G1497642 NA non-coding upstream 268246 83017904 ~ 83018198 (-)
G1496689 NA other downstream 486971 82235128 ~ 82245987 (-)
G1496390 NA other downstream 558106 82172469 ~ 82174852 (-)
G1495552 NA other downstream 1405845 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 1418643 81311747 ~ 81314315 (-)
G1498077 NA other upstream 855585 83605243 ~ 83605753 (-)
G1498442 NA other upstream 1232683 83982341 ~ 83982894 (-)
G1498522 NA other upstream 1301352 84051010 ~ 84057392 (-)
G1499671 NA other upstream 2471467 85221125 ~ 85223119 (-)
G1499684 NA other upstream 2536998 85251788 ~ 85288117 (-)

Expression


Co-expression Network