LOC110494726 (LOC106566015)


Basic Information

Item Value
gene id LOC110494726
gene name LOC106566015
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82955510 ~ 83235227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570042.2
CCAATTGTGTCTCACGTGTTTATTGTAAATCTTCTTGAGCGTGAAGATGAGCTATGTCTGCTACACACTTTTGAGCAGACTAATCATAACATATTCTTATACATATTCAATGTTTATAGGATTAAGGTATAACTCCAAAACAAGTAAACTCAGTGGACTTCAAGTCTGAAATGAAATTAAACTTAATGTAGCAGGTGGTCGAATCGACATAGCCTAAATCAAAAAGAATACGAGCACGATTTAATAAGTGCATGGCGCACTCTTTCTTGGCATGTGGTGTAACTGCCTTCTGGTAATTGTGAAATATTTGCGCTTTCTATCCGGTTCTCAGCAGAGGCATTGATACCAATCCCTTTACCAAAATGAAATGTGCATTTTGCTGCGTTGCATTATGATCAAATGAATTCAGTGGGCGCTGAGTGCACTCCATCGATTGGACATTGCTGTCTCCATTCCGCGGGCATGCGAGGTTTGCTTTTCAGTCATCTTCATTATCAGGAAATGTCAATATATGTTGTTTAAACACATTAAGTGACTGTTGTATAAAGGCTACTTTACGTCATCGGTCAATTTGACTTATCTGTAATCAGCAGCAGGCAACTAAAGTTAGGCGAGTCAAGACTTTCCACTGGACAGCGCTCCAGCGGCTTTGGGATCGAGACAGCCTACTCAAACGCATGGATTTCTTTGGGATATTTCAAACGATGGATGGAGCTCTTTGGAAGTAAGGTCGATGACATTCTTCAAGTAATCTACACAATATTACAAACAGGAACGACATTTTTCTTGATTCTTACATTGACACGTTTGTGCATTGGATATGGGTCAGTTCACACCGAGAAGATTCTGCCAGAGCAGACCCGGTAAAGGGGAATTCACTCAGCAACCCGGAGAATTGAGCCGAGTGGCCTGAAGGCTCTGACACGAATCAACTAACCCCCCCACCACCaagggaaggggagagattaAAAACTCCTGATCGAcgtggagggagagagtaagagaaggagggagagagagagagagggggaaaaagagCTTATCATACACCTTTGCTCTTCTTAATGCCCCCTGTGAGGGATCGCCATAGGCAGGGTGGTGAGTAACAGCGGGCAGAGGAGTAGCTGCCCACCACACTAGTCAGACCATGGAGTGAGGAGAATAGAAGGAAATAAAAAGATAAGAAAAGAAGAGGATATATCCTTTGAAGAACCAAACTTAAAGCAAAGCAACGAGACACATCACCTCTTCTGTGCCCACCTCTTCGAAAAGTATTATTAAGATTAACCCCCATGACATGAAGTAGTGTTCTCTGTGTTCCTGATTCCGCTGGGTTCTAGAGTGTGTCAGTATTCGTGTCTGGGCTGTGGTCATGGTGTCTCAGCTCCAGGGGTGTGCTTTGCATCGGACAGACAGGATCTGTCACAGAGGCAGCCTGATCAGGCTCTTACttctactctactgctctctcaTGACCGCCCAGGCTGCCAAACCCAAAGGCCCGGGTGGCACACACCTCAACTCCATCCGCATCGACGGAGACATCTCCCTGGGAGGCCTGTTCCCTGTGCACGCCAGGGGCAACGAAGGCAAGGCCTGTGGGGAGCTGAAGAAGGAGAAGGGGATCCATCGTCTGGAGGCCATGCTGTTCGCCCTAGACCGTATCAACAACGACCATTCCCTGCTGCCCAACATCACGCTGGGAGCACGCATTCTAGACACGTGTTCCCGGGACACCCACGCCCTGGAGCAGTCACTTACCTTCGTCCAGGCCCTCATCGAGAAGGATGGGACGGACGTCAAGTGTCTTGGCGGGGGAGCACCCATCATCACCAAGCCTGAGAGGGTAGTGGGAGTCATTGGAGCATCGTCCAGCTCTGTGTCCATCATGGTGGCCAACATACTGCGGCTCTTCAAGatCCCCCAGGTGAGTTACGCCTCCACGGCCCCGGAGCTGAGCGACAACACACGTTATGACTTCTTCTCGCGCGTGGTGCCCCCAGACACCTACCAGGCCCAGGCCATGGTGGACATCGTCAAGGCCATGCGCTGGAACTACGTCTCCACTGTGGCGTCAGAGGGCAACTACGGAGAGAGCGGGGTGGATGCCTTCATACAGAAGTCTCGAGAGGATGGAGGTGTGTGCATCTCTCAGTCAGTCAAGATTCCCCGGGAGCCGAAACAGGGAGAGTTTGATAAGGTCATTCGCAGACTAAGAGAAAACCCAAATGCAAGGGTGGTCATTATTTTCGCCAATGAGGATGATATCAGGCGGCTACTCCAAGCAGCCAAGAAGGCCAACCAGACTGGCCATTTCATCTGGGTGGGCTCAGACAGCTGGGGCTCAAAGATCTCTCCAGTGTTACACCAGGAGGAAATGGCAGAGGGAGCAGTCACCATCCTGCCCAAACGCCAGTCCATCAGAGGGTTTGATCGTTACTTCATCAGCCGCACACTGGAGAACAACAGGAGGAATATCTGGTTTGCTGAGTTCTGGGAGAACAACTTCGCCTGCAAGTTGAGCCGACACGCTTTGAAGAAAGGGTCCGGGCTGAAGAAATGTACAAATCAGGAGCGGATAGGGAAGGACTCCAACTATGAGCAAGAGGGGAAGGTGCAGTTTGTTATCGATGCAGTCTATTCCATGGCCCATGCGCTGCACAACATGCACAGGGAACTCTGTCCGGGGAAGGTGGGCCTTTGCTCCAGGATGGATCCCATCAATGGCACTCTACTGCTCAAACACATCCGCATGCTCAACTTCGCAGGAATAGCTGGCAACCCAGTGCTCTTCAATGAGAATGGAGACGCCCCTGGTCGCTATGAGATTTATCAGTACCAGATCAGAAACAGAACAGCTGAGTACAAAATCATCGGTCACTGGACCGAACAGCTCTCTCTGACCATCCGAGCAATGCACTGGCCAGGTGGAGGTCGTCAGATCCCTTACTCCATCTGCAGCCACCCCTGCCAGGCCGGAGAGCGCAAGAAGATAGTGAAGGGCATCCCTTGCTGCTGGCACTGTGAGCGCTGCAACGGCTACCAGTACCAGTCAGACACCTACAGCTGCAAGATGTGTCGCTTTGACCTGCGTCCCAACGAGAACCACACTGCCTGCCGTCCCATCCCCATTGTCAAGCTGGAGTGGAGCTCCCCATGGGCCATCATCCCTGTCCTCATCTCCGTAGCGGGCATTATGGCCACTCTGTTCGTGGTGGTCACATTCATCCGCTACAACGACACACCCATCGTCAAGGCGTCAGGCCGCGAGCTCAGCTACGTTCTGCTGACTGGTATCTTCATGTGCTATGCCACCACCTTCCTCATGATTTCTGCCCCTGATGTTGGCATCTGCTCCCTCAGACGGATCTTCCTGGGTCTGGGGATGAGTATCAGCTACGCAGCCCTGCTCACCAAGACTAACCGCATCTACCGCATCTTCGAGCAGGGATCCATGTCGGTGAGCGCCCCCAGGTTCATCTCCCCAGCCTCCCAGCTGGTCATCACCTTCAGCCTGACGTTGGTGCAGCTACTGGGGGTGTGTATCTGGTTTGGGGTAGACCCGTCTCAGGCCATCATCGACTACGAGGACCAGCGCACGGCCAATCCGGACATGGCCCGTGGCGTGCTCAAATGTGACATCTCTGACCTTTCACTGATCTGCCTGCTGGGTTACAGCATGCTGCTCATGGTCACCTGCACGGTGTACGCCATCAAGACCCGGGGGGTGCCGGAGACCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATAGTCTGGCTGGCCTTCATTCCCATCTTCTTTGGCACCTCCCAGTCCACAGAGAAGATGTACATCCAGACCACCACTCTGACCATCTCCGTGAGTCTGagtgcctctgtctctctggggatGCTCTACTTGCCCAAGGTCTACGTGATCCTCAGGCACCCGGAGCAGAACGTGCCCAAACGCACACGCAGCCTTAAGGCCATGgtcactgccaccaccatgtccaACAAGTTCAACCCCAAGGCCAGCCTACGTCCCAATGGAGAGGCCAAGACTGAGCTGTCTGAGAGCCTGGAAACACAAGcTTTCGCCACAAAGCAGACATACATCAGCTACAGCAACCATGTCATCTAGGAGAGGAAGGCCGTCGTCGTTGTTCTGGATGGTCACCTCATGGCGGGTGAAAATGTTCTTATGCACTGGAATTAAATGGGAAATAGAGGAAGAAAATGGACATGGGACATGTTGTGAGGATCACTAAAGGATTTCCCAGGGAATAGTCATAATAAAGGAAAGCGAGAAGACCAcacagagatgcagagagggacCCTCAAGGGCCCAACAGAACAGATACAGTATAATGGTGATGCTCCATCTTGTCGGCCATGACAGACAAGGCCAACACTTCCCCCCTGGCAGAGACCGGAGAGGATATGATGCGGGATGAGGCTTCTTCTCCCTTCTCGTTGTTTGCATTGCAGCTttattctctctatttctctctctctctctctctctctctctcttttttttcttatcTTATCTTGAGCCGACCGGACTGACATGCAATCCAATTGAAAGAATCTGTTCAGGTGTATGCCATGCAAGGTTGTAGTCTGCTAGTGTTCTCAACAATAAGGGACATTGCTCTCAATGCTACAGGAAGTTGCAGAGCCACCAGGATGAGATCAGTCTTTTATTTCAAGGAGGATTTTAAGTGACATAattgatttttgttgtttttttaaaggtattCCAGTTTAAATACTGGATTCAAGAAACCATTCCAACAATGCAGGATAATTGTACGCCAtcatatttttgttgtttttgcctTACCTGTCTTCATTGAGTTGACCCAAAAAATTATAATGATGTTGACAAAAAAATAATATGGTCATTACTGATTTTGAGCATGCCAGTTTGAacatcctgtgttgtgttgtaaaaaaaatattggaaTGCGTTCAAACTCTGTTGCAGTGTGGTTTCTATTATATGTAAATTCCAAACTGGTGAAGGTCTAGTGAGTGATCTTTGTTTCTTTGTGTGAGGTGAGGCCCTGATCTGTGTTATTAACTAACCAAAGGCTACCACTGTCCTCTGCCCACTTTGCCCATACTTTAATACTGTAACTCCAGACTAAAACAAAGAGTCTCTCAGTACAAATAGAGATGTGTCATGGTGGACTGAACACAGAGGTGCAGAATGCCTCAAGATAAAAACGTAATATTCAAAATCTGTAAATTTGACTAAATATTAGCACTTCACTCCACATACTGTTCTCATGGGCAATAACCTTCAATCTGgataacaacacaaaacaaattgTAAGGCTAGAGAAATGTATCGACCAATTTCACCAATACAATCAACACCAAAACATGTCGGAGAGTAAGCATGGAGTACCAATCCCCAAAAGAATATTAGAATCCTTGATGGACACATACGATTTATGCTTTTCACCACTGGGAATGGTAAGTGTAGAAACCGACTTGCTAAAGTCGATAAACGATAAACTGGGCATACTTGAACTAGTCAGTAAAGATATAAAGCAATTGAAGGCGAGCCTCGAGATCAGTGACGAAAAAGCTGCGACAATGGAGAAAGAAACAAACAAGCTAAAAGGTACAGTCAAATACAATTGAAACGGACGTTAAAAAACTTTAAAAGGAGAACATGTTTCTGAGACCAGCCTTACTTGAAATACAGACTAGATCTATGAGAGCAAATCTGGTACTTACTGGTATCAAAGAAAAAGAGGGTGAAGATCCTGAAAGTGGGATGAAATAATGATGTCTTGAAGAGCTACAGATCCCAGGCGATACTGTTAACCAAATCAAACTCTAACGTGTACACCGTTTAGGACAGAGTGGACAGAGATATAAGCACCCAATCATTGCCAAATTTGCATTCTTCCGAAATAAAAGAAAAGTTAAAAGCCTAGGTGGAAGACTCACTGGCACGAAAATAGGCATGAATGATCAGTTCCCGAAGGAAATTGCAGAACGGCGTAGTTTATCTCGTTGTCGATAAACTGTATATTGATAACCAATTGTTCCGAGTCACCAAGACTACTCCATGGCATTTCTAAATACTACAAAGTTCCCATAAAGGAGTCCAATAACGGAACATCCAATACTAtccatggtagggattgtaatacatttttttggAAAACTAGTCTCTCAGGCTGCAAGAGGCCCTATAGTGAGATACCATCGATGACCCCCATCCATTTCCAGCAGCTATCCTACCGGTCACACAAAGGTACAGCTAAGTTGTACAGATCCAAATCCATTAAATGGGGAGTAAAGTATCCCCAGGGGAGTATGCCACACAGTAGTCGTGCACCCAGGATGATATCCATAATGGATAAAACAGTGGTTTTATGTGGTAAAACAGTAgactaattaataaaaaaatgaattatCTCTGAGGACTGTGTCCTGTTTTGCAAAATGCTTCAGCGATATACTAGTATACTATATGACCTCAAGCTACAGAAAGGAATCTACTCAAGACAAAATGCCAAAGGATCCAGTAGTCCATTCGGCCGCCATCAGTTCTCTGAATAAATACATCAGAAGTGGTTGCTGTAAAACTGAACAGTCCtttagtttattttattttatattgtgaGGTCATTTGTGATGTGAACTCAACGCTGCTTTTCCATTAACCTCTGTATtactaaaataataaaataacgtGAGTGCTGACCAAATGAAATGGCAAGTTAATGTACGTTATTAAATAGATTGATGATGTCCGCTTTTATGTCTTGACAAATCTAAAAA
>TU1712001
AAAGATATAAAGCAATTGAAGGCGAGCCTCGAGATCAGTGACGAAAAAGCTGCGACAATGGAGAAAGAAACAAACAAGCTAAAAGGTACAGTCAAATACAATTGAAACGGACGTTAAAAAACTTTAAAAGGAGAACATGTTTCTGAGACCAGCCTTACTTGAAATACAGACTAGATCTATGAGAGCAAATCTGGTACTTACTGGTATCAAAGAAAAAGAGGGTGAAGATCCTGAAAGTGGGATGAAATAATGATGTCTTGAAGAGCTACAGATCCCAGGCGATACTGTTAACCAAATCAAACTCTAACGTGTACACCGTTTAGGACAGAGTGGACAGAGATATAAGCACCCAATCATTGCCAAATTTGCATTCTTCCGAAATAAAAGAAAAGTTAAAAGCCTAGGTGGAAGACTCACTGGCACGAAAATAGGCATGAATGATCAGTTCCCGAAGGAAATTGCAGAACGGCGTAGTTTATCTCGTTGTCGATAAACTGTATATTGATAACCAATTGTTCCGAGTCACCAAGACTACTCCATGGCATTTCTAAATACTACAAAGTTCCCATAAAGGAGTCCAATAACGGAACATCCAATACTAtccatggtagggattgtaatacatttttttggAAAACTAGTCTCTCAGGCTGCAAGAGGCCCTATAGTGAGATACCATCGATGACCCCCATCCATTTCCAGCAGCTATCCTACCGGTCACACAAAGGTACAGCTAAGTTGTACAGATCCAAATCCATTAAATGGGGAGTAAAGTATCCCCAGGGGAGTATGCCACACAGTAGTCGTGCACCCAGGATGATATCCATAATGGATAAAACAGTGGTTTTATGTGGTAAAACAGTAgactaattaataaaaaaatgaattatCTCTGAGGACTGTGTCCTGTTTTGCAAAATGCTTCAGCGATATACTAGTATACTATATGACCTCAAGCTACAGAAAGGAATCTACTCAAGACAAAATGCCAAAGGATCCAGTAGTCCATTCGGCCGCCATCAGTTCTCTGAATAAATACATCAGAAGTGGTTGCTGTAAAACTGAACAGTCCtttagtttattttattttatattgtgaGGTCATTTGTGATGTGAACTCAACGCTGCTTTTCCATTAACCTCTGTATtactaaaataataaaataacgtGAGTGCTGACCAAATGAAATGGCAAGTTAATGTACGTTATTAAATAGATTGATGATGTCCGCTTTTATGTCTTGACAAATCTAAAAAGGGAAAAATGTAAACAAAAAAGAAACAGTGCCTGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106097639

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570042.2 False 6804 mRNA 0.47 11 82955546 83235227
TU1712001 True 1293 lncRNA 0.38 1 82955510 82956802

Neighbor

gene id symbol gene type direction distance location
igfn1.1 LOC106566016 coding downstream 43517 82874237 ~ 82912029 (-)
LOC110494724 LOC106566017 coding downstream 81608 82855725 ~ 82873938 (-)
igfn1.4 LOC100194677 coding downstream 105565 82819821 ~ 82849981 (-)
LOC118940110 NA coding downstream 147545 82802659 ~ 82808001 (-)
LOC110493276 LOC106566018 coding downstream 154652 82770283 ~ 82800894 (-)
rs10 LOC106582706 coding upstream 29309 83264536 ~ 83267901 (-)
LOC110494728 LOC106566011 coding upstream 88278 83323505 ~ 83343851 (-)
LOC110494729 LOC106566010 coding upstream 132017 83367244 ~ 83376606 (-)
LOC110494732 LOC106566008 coding upstream 150439 83385666 ~ 83387331 (-)
LOC110494730 LOC106566007 coding upstream 153433 83388660 ~ 83394882 (-)
G1497552 NA non-coding downstream 85146 82870067 ~ 82870400 (-)
G1497090 NA non-coding downstream 165231 82790091 ~ 82790315 (-)
G1497072 NA non-coding downstream 189371 82763830 ~ 82766175 (-)
G1496921 NA non-coding downstream 293908 82629246 ~ 82661638 (-)
G1496844 NA non-coding downstream 429764 82525497 ~ 82525782 (-)
G1497823 NA non-coding upstream 14217 83249444 ~ 83251469 (-)
G1497852 NA non-coding upstream 70740 83305967 ~ 83311342 (-)
G1497873 NA non-coding upstream 116076 83351303 ~ 83351591 (-)
G1497875 NA non-coding upstream 122711 83357938 ~ 83358249 (-)
G1497881 NA non-coding upstream 129659 83364886 ~ 83365246 (-)
G1496689 NA other downstream 709559 82235128 ~ 82245987 (-)
G1496390 NA other downstream 780694 82172469 ~ 82174852 (-)
G1495552 NA other downstream 1628433 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 1641231 81311747 ~ 81314315 (-)
G1498077 NA other upstream 370016 83605243 ~ 83605753 (-)
G1498442 NA other upstream 747114 83982341 ~ 83982894 (-)
G1498522 NA other upstream 815783 84051010 ~ 84057392 (-)
G1499671 NA other upstream 1985898 85221125 ~ 85223119 (-)
G1499684 NA other upstream 2051429 85251788 ~ 85288117 (-)
G1497642 NA non-coding upstream 61102 83017904 ~ 83018198 (-)
G1497647 NA non-coding upstream 71724 83028526 ~ 83028761 (-)
G1497649 NA non-coding upstream 74684 83031486 ~ 83031919 (-)
G1497722 NA non-coding upstream 165061 83121863 ~ 83122091 (-)
G1497726 NA non-coding upstream 171779 83128581 ~ 83128781 (-)

Expression


Co-expression Network