LOC110494729 (LOC106566010)


Basic Information

Item Value
gene id LOC110494729
gene name LOC106566010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83367244 ~ 83376606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570048.2
TTTCTAATTCTAGTCCATACACCGTGACGAAAGGTGACGTTCGATTGCACCGACGTCCAACGTTGTCCCTCCCGCAGCCATGCGTATTACgcttgttgttgttgaactgGTTGTTATGACTGGACAAGGCCTCGGACTAAATTAGGAGAGAACCCCTCGTCGCTGCCACGGGAGACCTGCCAATGGAGGGCATGGACATAGACCTGGACCCGGAGTTCGTTCAGAAATTCAACTGCATGGGCACCACTGACAAGGACGTCCTCATCTCAGAGTTCCAAAGACTGCTGGGGTTCCAGGTCAACCCGGCAGGATGTGCTTTCTTCCTTGACATGAGCAACTGGAATCTACAGGCAGCCATCGGTGCCTATTATGATGTTGAGAGTCCCAGCATCAACACACCATCCATGTCCTTTGTGGAGGATGTGACGATTGGTGAGGGAGAGTCTGTTCCCCCCGACACACCATTCACAAAGACCTGGAGGATACAGAACACAGGTGCAGATTCCTGGCCACCTGGGGTATGTCTGAAGTACATTGGAGGGGACCAGTTTGGCCACGTCAACATAGTGATGGTGCGCTGTCTGGAACCCCAGGAGATTTCAGACGTCAGTGTGCAGATGCGTAGCCCCGCAGCGCCCGGCATGTACCAGGGCCAATGGAGGATGTGCACACCCACAGGGCTGTTTTACGGAGACGTCATCTGGGTGATCCTCAGCGTGGAGGTGGGTGGCCTTTTGGGCGTGACACAGCAGCTTTCCTGCTTCGAGACGGAGTTCAACACCCAGCCGCACCGCAACGTAGAGGGAGACTTCAACCCTTTTGCCTCGCCACAGAAGAGCAAACGCGACGCCGGAGACGACAACAACTTCAAAGAGCCTGGAGGAGCCTGGGAGGGCAGGCAGGACGCCATCCAGCAAGATGAAAACGGACTGTCTCACAATGCTGTAAATAGAGCATCGAATGGGCTACAAAACAATCTGTCAGTAGTGACTTACAGTCAGggTGTTCATGGACCCTATCCGTTAGGCCAGAGTTAGACAGATGGAGACCCAGGCCAGGTGGTGCTGAACAGACCTGGGCATGCTGATGCTGACCTGCGGCAGGGgcactggagaggggagggacacATATTTCATACAGACTCTAGAAAACTCTCTCCCTTGGGCCCTACCCCATTCCACCAAAACACAAGCTACAGTGAGAACAAGGAGGCACCTATCCCAGTGAACACCCTACCAGCATCATCAGCACCCTCCCAAGATCAGCATGAGTGAATGCTACATTAAGAGTGCTATAAATCCTAAATTCTACTACATACATGTTTTGTTATTATTTTGTAGCTGTCAACACACCTCATTAGTGTAGGGTAGGCACTGCTGGTTGAGCTTAGCAAAaggatggatgtgtgtgtgagcttgAGCAAATGAAATGTGTGAGAAAAAGCCATCTAAAACTATTTTGCCTGTTGAGCTATTACTGTAGGATTTGAATCCTTGTCTGTGTTTTCTGAATTGTGCATGTGTGCACGTGTATAGTTTCCTTTTGGATTTTACTGAACACAGTGGTGGATACAACTTGGGTAAAGAAGTTGTGGTGACCTATGTATGTAGGCCAGGTAGGTTATGTATCTAAATAGATTAAACAAAATAAtactaataaaaaaatatataattctccACAGGTGTTTCAGAAATGAGGATACAGGCCTGTGAATGAGTTGCCCTGTAAACAAGCCTTTGCTGTACTGTACTTACGACACATATGTGGTAAAGCTTGTTCTTTAGAGCCAGCAGATGGTGCTATTAACTAAACAACCAAACCAAATGGTCTCTGACGCATCACGACAGACATTGAAAAATAGACTTCCCTTTCCCATCGTAGGGAGAGGTATTTACATTCTGGGTTTGTGACTGCTCAAGCCATTGACAATATCAGCACCGTTTGTTTTGTTTCTGCAGTTTGCACGATGTCACTTCAGATGTTTACAAGTGGTGATTTGATTTAGTTTCTGTATGCTGTCTGGATCTAGATATTATTGTCTGTTGTAATAGTATATATTCTCCGTGTTTTAGTTTTCTTCCACACTTAACAACGTTGAGTCCCGTTTTGATTGTCAAATTAAGTAGAGTGGGTACATACGCTCAAAAGGACAGGTTCAACCCTGGGATTCATTCATTCCTCTGCGTCAAAGTGGAATGCTCTATTACGAGATGTAGTCATATTAATTATTGTTTACAATTACATGGTATCAACCAAGTTAACATCATGTTATGCAATTTGTTTCCCATTTGGaatgttattttaatttattttatttaccttCACGTTCTTCAAGCAATCAAGATTTCTCTGCTTCCAATGTTTCACAATTTCCACAAGGTTATGAGTAAATGAAAAACAAGGAAATTGATGACAATTGTTATTCATAGACTAAAGATCTTGTAGAGGCTTATCTTATGGTTTCTTCTGATGAAAAGTCCCTGTTTTCTTGTGGCTGTTGTGCTTTCACACCAGCCTTTCATATTTATGTATTTGTCAAGGGCATTATGTTAGTCCTCTGTGTTCACTGTTCTGCATTTTACTCTGAAACCAGAGAGTGTTTAATTCTTAGCTTTAttccgttttttttattttggtgGGAGGGTGCAGTTGTAAGCAAGATGGCATGGAGAGTGGCGTGTTTGCATAGTCTTATGATAGAACATTCATGAGAAGAGAAAATGTCAAATTAAAGCCTTTTTCCTATATGTATAAATGAACATTTGTACGATTAAATTAACACTGAAACAGAAAA

Function

NR:

description
uncharacterized protein C6orf106 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570048.2 True 2794 mRNA 0.44 5 83367244 83376606

Neighbor

gene id symbol gene type direction distance location
LOC110494728 LOC106566011 coding downstream 23393 83323505 ~ 83343851 (-)
rs10 LOC106582706 coding downstream 99343 83264536 ~ 83267901 (-)
LOC110494726 LOC106566015 coding downstream 132017 82955510 ~ 83235227 (-)
igfn1.1 LOC106566016 coding downstream 455215 82874237 ~ 82912029 (-)
LOC110494724 LOC106566017 coding downstream 493306 82855725 ~ 82873938 (-)
LOC110494732 LOC106566008 coding upstream 9060 83385666 ~ 83387331 (-)
LOC110494730 LOC106566007 coding upstream 12054 83388660 ~ 83394882 (-)
LOC110494731 LOC106566009 coding upstream 21034 83397640 ~ 83408715 (-)
LOC110494733 LOC106566096 coding upstream 155906 83532512 ~ 83553720 (-)
si:dkey-261l7.2 LOC106566092 coding upstream 232236 83608842 ~ 83629064 (-)
G1497882 NA non-coding downstream 1510 83365528 ~ 83365734 (-)
G1497881 NA non-coding downstream 1998 83364886 ~ 83365246 (-)
G1497875 NA non-coding downstream 8995 83357938 ~ 83358249 (-)
G1497873 NA non-coding downstream 15653 83351303 ~ 83351591 (-)
G1497852 NA non-coding downstream 55902 83305967 ~ 83311342 (-)
G1497887 NA non-coding upstream 2775 83379381 ~ 83379586 (-)
G1497889 NA non-coding upstream 16439 83393045 ~ 83393287 (-)
G1497891 NA non-coding upstream 18277 83394883 ~ 83395171 (-)
G1497899 NA non-coding upstream 43382 83419988 ~ 83420639 (-)
G1497901 NA non-coding upstream 51295 83427901 ~ 83428108 (-)
G1496921 NA other downstream 705606 82629246 ~ 82661638 (-)
G1496689 NA other downstream 1121257 82235128 ~ 82245987 (-)
G1496390 NA other downstream 1192392 82172469 ~ 82174852 (-)
G1495552 NA other downstream 2040131 81326685 ~ 81327113 (-)
G1495538 LOC106566048 other downstream 2052929 81311747 ~ 81314315 (-)
G1498077 NA other upstream 228637 83605243 ~ 83605753 (-)
G1498442 NA other upstream 605735 83982341 ~ 83982894 (-)
G1498522 NA other upstream 674404 84051010 ~ 84057392 (-)
G1499671 NA other upstream 1844519 85221125 ~ 85223119 (-)
G1499684 NA other upstream 1910050 85251788 ~ 85288117 (-)

Expression


Co-expression Network