XLOC_003340 (wdr18)


Basic Information

Item Value
gene id XLOC_003340
gene name wdr18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13642157 ~ 13789451 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006538
AAATACTCGCGCTTTGTGTATCCAACATGTCGGCGCCCGTGGAAGTAGTTCTGTCTGCAGATTCAGCGGGTCAGCTGTTTAACTGTGCGGTTTATGACCCACATACCGGGTCAGAATTCTTATCCTATCGCGGAGGAAACACCTCTTCCAGGTCTTTAACGATTCTAAATGGAGAATATATATTAGGAGCTCAACTCGGCAAGAACTACATAAACGTGTGGGAGATCCAAAGGAAGGACCAGCTACAGCAGAAGATTGTGTGTCCTGGGATCGTTACATGTCTTTGCGCGTCTCCTGATGGTCTTTATGTGCTAGCAGGCATTGCTGAAGCTATATACCTGTGGGAGGTGTCAACAGGAAATTTGTTGGCCATTTTGAGCCGCCACTTTCAGGACCTGAGTTGCATCAAGTTCACTGATGACAGCAGTCACTTTGTGTCTGGAGGGAAAGACAATCTGGCTTTCATATGGAATCTCTCCAGTGTTGTTCAGCTGGATTCATCCCGTACACCAGAACCCCGACACATTCTGTCCCGACACTCTCTCCCAATCACTGACATCCACTGTGGCCTGATGGGACCACAAGCTCGTGTTGCCACTGCTTCCCTGGACCAAACCGTTAAGGTTTGGGAAATATCCTCTGGGGAGATGCTGCTGTCTGTCCTCTTCGATGTTGGCATCATGTCAGTGACTTTTGACCCCTGCGAGTATTTTCTGTTCTGTGGAGGCAGCGATGGCAACATTTTTCAAGTCTCTCTCTGCAGCACGAGTTTAAGCCGAGATAAAACCTTCCAGTCGGACAGTGAAGGCAATCAGGTGTTCAAAGGACACAGAAATCTGGTAACATGTCTGTCTGTGTCCATGGACGGCACCGTCCTTCTTTCCGGCTCCAATGATGAGACCGTCCGCATGTGGGATGTTCAGAGCAAGCAGTGCATATGGACCATCAACCACAGAGGTCCTGTGACCAATGCTGCCATCATACCAGCACCTGCCAACATGTTTCTTTCTGACAGTCATCCAGCCGTCCCTCTGCCACGGTTCAGTCGCCACCTGAACCCCTCCGAGCAGGGGGATGGCACAGGCACCGGAGGCATGAGTCTCAGACTGGGAGCCAACACGCAGGAGCCGGAGGGAACGTATTTGGAGAAAGCCGAAGAGCTTTACTCTCTGATGTGTGCTGTGACAGACAAGAGTGTGTTTGGAGATGGGGAGAACACAAAGGTACGAGTGTCTGAACTGGAGGAGGAGGTGAGGACCCTGAAAAAGATCAATAAAGATCTGTATGAGTTCTCCACTCAGTTGCTCACCAAACCCAACTAGAAGAGATTGCTGCTGTGGAGCAACAATCATGGCAGTACAAACACCACGGAAGGAGTAAAATGCCTAAAATGTGACTTTGCATTGGACTGAAAATGGCAACATTTTTTACTTACGTTATTTTTATGTCCTGAGGGCAGGATTGTTCTCTCCATAGATCTTAACACcagcttatgcatgtgtgtttatgaGGTGACATTTACTTTTTGTATTACTGTAGACTTATGAAATGTTTCTGAAGTTGAAGTAtctgttttgtaaaacaattggacctgtacatttaaaacaattaatagaaataaaaaatattcattca
>TCONS_00006539
ACTCGCGCTTTGTGTATCCAACATGTCGGCGCCCGTGGAAGTAGTTCTGTCTGCAGATTCAGCGGGTCAGCTGTTTAACTGTGCGGTTTATGACCCACATACCGGGTCAGAATTCTTATCCTATCGCGGAGGAAACACCTCTTCCAGGTCTTTAACGATTCTAAATGGAGAATATATATTAGGAGCTCAACTCGGCAAGAACTACATAAACGTGTGGGAGATCCAAAGGAAGGACCAGCTACAGCAGAAGATTGTGTGTCCTGGGATCGTTACATGTCTTTGCGCGTCTCCTGATGGTCTTTATGTGCTAGCAGGCATTGCTGAAGCTATATACCTGTGGGAGGTGTCAACAGGAAATTTGTTGGCCATTTTGAGCCGCCACTTTCAGGACCTGAGTTGCATCAAGTTCACTGATGACAGCAGTCACTTTGTGTCTGGAGGGAAAGACAATCTGGCTTTCATATGGAATCTCTCCAGGTCTGTTATAAGCCCTTCATTTATCATCACTTTTGTTTCCAATGTTAATTGCGGTTATGAGTGAAGCCTTGACCTTAATAAGCGACACCAAACCTACAGAGCATTTCTCTGTTATCATGGTTAACCATGCAGGAAGCTCTATTGAAAGgtcttgtgaagtgctttgaaatgtgcatttttattcaatgtttgacgtaatctcaacctaAACATAAAAAGATGGTGGGACATAGtgaagctcctcccctttaaaaaaaacagccaatagcattttgtttcatcAACTCTGCCAGTAAAAGTAGTTGAGCTCAAGTggatcaaaagaaaaacaaatgcgaAGAGGCTTAAAGGGGGCGGGCATATcacatactagagagcatttgattggttaggAGAAATTGTAGTATAGCTTGAcatgaataaaactgttgattcatttaGGCAGAGCTGACAAACTACATGCTT

Function

symbol description
wdr18 Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in dynein axonemal particle. Predicted to be part of Rix1 complex and nuclear pre-replicative complex. Is expressed in Kupffer's vesicle; forerunner cell group; liver; and pancreas. Orthologous to human WDR18 (WD repeat domain 18).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0030174 regulation of DNA-dependent DNA replication initiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0097344 Rix1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005656 nuclear pre-replicative complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040905-4 Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in dynein axonemal particle. Predicted to be part of Rix1 complex and nuclear pre-replicative complex. Is expressed in Kupffer's vesicle; forerunner cell group; liver; and pancreas. Orthologous to human WDR18 (WD repeat domain 18).

Ensembl:

ensembl_id ENSDARG00000041113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006538 False 1635 mRNA 0.47 10 13642157 13789451
TCONS_00006539 True 942 lncRNA 0.43 3 13642161 13649258

Neighbor

gene id symbol gene type direction distance location
XLOC_003339 si:ch211-1a19.3 coding upstream 1686 13629528 ~ 13640471 (+)
XLOC_003338 arrdc2 coding upstream 108375 13524504 ~ 13533782 (+)
XLOC_003337 si:dkey-13m1.5 coding upstream 124311 13507053 ~ 13517846 (+)
XLOC_003336 homer3b coding upstream 136215 13423776 ~ 13505942 (+)
XLOC_003335 si:dkey-13m1.2 coding upstream 228186 13366773 ~ 13413971 (+)
XLOC_003341 CR555295.2 coding downstream 28118 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 coding downstream 75395 13864846 ~ 13864964 (+)
XLOC_003343 grin3bb coding downstream 214785 14004236 ~ 14064984 (+)
XLOC_003344 CT956066.1 coding downstream 292089 14081540 ~ 14082177 (+)
XLOC_003345 med16 coding downstream 314966 14104417 ~ 14143702 (+)
XLOC_003318 CR450764.6 misc upstream 930161 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 947894 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 956558 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 962129 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1018306 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 2333335 16122786 ~ 16123082 (+)
XLOC_003332 NA non-coding upstream 447560 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 489772 13151919 ~ 13152385 (+)
XLOC_003322 NA non-coding upstream 857098 12782215 ~ 12785059 (+)
XLOC_003319 NA non-coding upstream 923755 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 1119128 12522770 ~ 12523029 (+)
XLOC_003353 BX571942.1 non-coding downstream 641822 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 1072835 14862286 ~ 14863542 (+)

Expression


Co-expression Network