LOC110494736 (appl1)


Basic Information

Item Value
gene id LOC110494736
gene name appl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83576027 ~ 83592619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950786.1
AGGCGGGATATCCGCATGTAGGATGATATGTGTGTGGAGGTTGATCTAAAGGGAAAACATTCAGTGGGAGTGATAGGCTAGCTATTTCATTTCTTATTGACCGATTACAGTTCATATTCGTACGAATTGAAATAGCTAGCTATAGCCATGCCTGGAATAGATAAATTACCGATCGAGGAGACATTCGAGGACAGTCCGCAGACGCGCTCCCTGCTCGGTGTGTTCGAGGAGGATGCGGCTGCAATATCCAACTACTCCCAGAAGCTCTTCCAGGCCATGAACAGAATCTACGATGCACAAAATGAGTTGAGTGCTGCCACCCATCTCACCTCCAAACTCCTGAAGGAGTATGAGAAACAGCGCTTCCCTCTTTGCAGCGACGACGAGGTCATGAGCTCCACCCTGCAGCATTTTGCCAAAGTCATAGACGAGTTGAGTTCCTGTCATGCAGTCCTCTCCACTCAGCTGGCTGACGCCATGATGTTCCCTATCACCCAGTTTAAGGAGAGGGACTTAAGAGAGATACTGACTCTGAAGGAAGTGTTCCAGATTGCCAGTGATGATCATGACATGGCCATCAACCGATACAGCCGTCTCTCTAAAAGGAGGGACAACGAGAAGGTGAAGGGCGAGGTGATGGAGGATGTGTATACCTCCAGGAAGAAGCAGCACCAGACCATGATGCACTACTTCACAGCCCTCAACACTCTGCAGTACAAGAAGAAGATTGCCATTCTGGAGCCGCTGCTGGGGTATATGCAGGCACAGaTCAACTTTTTCAAGCTGGGATCAGAGAACCTCACCCAGCAGTGGGAAGATTTCCTCACCAACATAGGAACCAGCGTTCAGAATGTCCGCAGGGAGATGGATGGTGAGGTAGATGTAATGCAACAGACCATCCAGGACTTGGAGCAGGCCAGTGACCTCCTCTACATGCCAGACCCCGACCCTAGCCAGGTTCCTGTCAACCGCAACCTCACACGCAAGGCCGGCTACCTCTACAGACGAAATAAAACAGGCCTAGTGTCTTCCTCCTGGGAGCGGCAGTACTTCTTCACCCAGGGAGGGAACCTGATGGGCCAGGCACGAGGGCATGTAGCTGGGGGTCTGGTCATGGACATCGATAATTGCTCTGTCATGGCCGTGGACTGTGAGGACCGACGCTTCTGCTTCCAGATCACATCCTTTGACGGCAAGAAGGTGGTCATATTGCAGGCAGATAGCAGAAAGGACTGTGAAGAGtggaTTGCAACTATAAACAACATCTCAAAGAGGATATATCTGAGTGAGAACCCAGAGGAAATTGCAGCCAGAGTGAACCAATCAGCTCTTGAGGCTGTGACACCGTCTCCCTCCTTCCAGCAGAGGCATGAGAGTATGCGGCCGACCACACAAGGGCGGTCCCGGGCAGTGCGGACCAGCAGTGTGAGCTCAGTGGGCTCTGAGACGGCCTCACcggccctctctgtcctctcattgGACGCCCTGGTGGCTCCTGACACGCCCATCCAGTTTGACATCATCTCTCCAGTCAGCGAGGAGTACGCAGGCCAGGCCAAGGCTGCGGGACAGGGCAGAAGGACCAACCCGTTTGGTGAATCAGGAGACACTCCACCTGAGGAGAGTGAAgACTCCATCCTGCACCAGCTGTTCATTGTGCGTTTCCTGGGTTCTATGGAGGTGAAGAATGCAGACAGCTCTGACGTCATCTATGAGACCATGAGACAGATCCTAGCAGCCAGGGCCATACATAACATCTTCAGGATGACTGAGTCTCACCTGCTGGTCACCTGCGACTGCCTCAAGCTCATCGATCCTCAGACACAAGTCACACGGCTGAGGTTCCCTCTTTCCAGTGTGGTGGTGTGTTCGTCCCACCAGGAGAACAAGCGTCTGTTTGGATTCGTCCTGCAGACTGCAGAAGGCAGGGTGGATGGACGACCTGTCACTGTCTGCTATATCTTTGAGTCCAACAATGATGGGGAGAAGATATGTGACAGTGTTGGGCTGGCCAAACAGATCGCTTTCCACTCAGAGATGGATCGCAAAGCTACAGAGAAGAAGGAGGAGCAGGACAAGGCCAAGGAGAAACAGCAGGAGGAGCTGAGTAAACAGAAACAGATTGAAAAGGACCTGGAGGAACAGAGCCGTTTAATCGCAGCCTCCAGTCGCCCCACCCCCCCTGCTCCTAACGCTGATGGGCAGTTCCTGGTGCTGAGCAAAAGCCAATCAGAGGACAGTGATGCAGGACCGGAGGGGCGGGAGAAGGGAGAATCGGAGGCCTAAAAGAATGGAAGGGAAAGAGCTTTCATCAGATACTACTTTGGACCATCAAACTACCGGAAATCGATCATCTTCAATGGAAGGAGACGACATGAGAAGACTTTGAGCAATTGTTTGTGATTTTTGGTCCATAGGGcaggcacaattggcccagcgtcttctggATTAGGGGTAGGCCgttactgtaaataagaatttgttcttaattgacttgcctagttaaataaatgttaaaaagtCACCTATGTTTGAGCCAATGTTCTTTTCTGAACAGACAACTGAACAAGCTTGGCGATGTCTTACTACAAAGTACTATCCGGTGACAAATCGCAGTTAGAGCGGGAGTTGGTTCCTTGGCTCCTCAACCCTGGGCCTCGGCTTAGCCTCTATGGGTTTTTCTCTGGCTCCTGCATTGTTTTACAGAGGAGTTGGACTGCAAATAGACTTTATAACATTAAACAAAGATGGATTAAGACCCCACTAAACTTAACAAAAGAAGAGGAGAAATAAATGTGTGTGAATGACTGAACACTCAAAGAATCCTTCCGGATCTTTCTCATCCTCCATATGTAAATCATGTATTATATACTGGTACTTGTATTCAGAGGAAATGTAGAAGGAGATGATTAATGCTTTTaagcttttattttattttttataatcagGGTGACTCTGAATACCATTGGCATACTAGAAAACATAGAGATTATAGAGTGTATTAATTTGTTGGGGGAGGGAAGACATTGCACATGTTAATACTGTAATGACATGTATAAAATACTTGTTTATGTCAACCATATACATGTTGTCTTCCATTTAGCTAACACGCTTGCATGTGCTTTGGATCCCATCATTCAAGATGAATTGCCACGCTTGTTTTTCTTCTATAATGAATATTTACCCTTTTCAATTAACCGTTTGAGTGTGTTTGGTTTCAAGATGAGAATTTAGATCTCTAATCATTTAACCCCAAACACCAATAATGGTTTCTCGTTCAATGGATCAGACTACTTGCCATAGCCCAACAGACCTTGTGCCTGAGGTGTAATGTATTCATCTCATTGGTTGGAACAAAGAACAGCACTATAATACAAAGTTCCAAATCAGGGCATTGACAATTAAAAGGAAAAATGGGATCTATGAACTGTTTGTTTTTCCCCATTATGTGTGTTAATCCATTTTATGTTTCGAAATGGTTTGTGTTTTTCTCAGATTTCTGTATAAAGAAATgcactacatacagtatgtatgctaTTGAACAGTTCGTCTGAAATGTTCCTCACCCTTAACCCATTGCTATGTAAGTTTGTGCTGAGCTCTGACTAAGTTTATCACTTATCAACTCATAGTGAACACATGTTGCAGTGACATGATGCAGGAAAAACTATCATATCAACAAAGTGGAATTGATTTGACATATTACTGATAATGAAAGTTGAGTCTACTTTATTATCATTTTGGGGGAAGGTGATTAAAGGAGTAGTTAGGAACTGTTACTGAGATGTTAATAGGGGGGACTGCACTTTAATTATTGATGCAGGGTGAAAAAGGATCATGTTTACTCTATATACTTCAGTGATTACTGTTGCAGTCTTAAATAGCTTTTCAACAATAAAGGTACACTAATT
>XM_036950787.1
AGGCGGGATATCCGCATGTAGGATGATATGTGTGTGGAGGTTGATCTAAAGGGAAAACATTCAGTGGGAGTGATAGGCTAGCTATTTCATTTCTTATTGACCGATTACAGTTCATATTCGTACGAATTGAAATAGCTAGCTATAGCCATGCCTGGAATAGATAAATTACCGATCGAGGAGACATTCGAGGACAGTCCGCAGACGCGCTCCCTGCTCGGTGTGTTCGAGGAGGATGCGGCTGCAATATCCAACTACTCCCAGAAGCTCTTCCAGGCCATGAACAGAATCTACGATGCACAAAATGAGTTGAGTGCTGCCACCCATCTCACCTCCAAACTCCTGAAGGAGTATGAGAAACAGCGCTTCCCTCTTTGCAGCGACGACGAGGTCATGAGCTCCACCCTGCAGCATTTTGCCAAAGTCATAGACGAGTTGAGTTCCTGTCATGCAGTCCTCTCCACTCAGCTGGCTGACGCCATGATGTTCCCTATCACCCAGTTTAAGGAGAGGGACTTAAGAGAGATACTGACTCTGAAGGAAGTGTTCCAGATTGCCAGTGATGATCATGACATGGCCATCAACCGATACAGCCGTCTCTCTAAAAGGAGGGACAACGAGAAGGTGAAGGGCGAGGTGATGGAGGATGTGTATACCTCCAGGAAGAAGCAGCACCAGACCATGATGCACTACTTCACAGCCCTCAACACTCTGCAGTACAAGAAGAAGATTGCCATTCTGGAGCCGCTGCTGGGGTATATGCAGGCACAGaTCAACTTTTTCAAGCTGGGATCAGAGAACCTCACCCAGCAGTGGGAAGATTTCCTCACCAACATAGGAACCAGCGTTCAGAATGTCCGCAGGGAGATGGATGGTGAGGTAGATGTAATGCAACAGACCATCCAGGACTTGGAGCAGGCCAGTGACCTCCTCTACATGCCAGACCCCGACCCTAGCCAGGTTCCTGTCAACCGCAACCTCACACGCAAGGCCGGCTACCTCTACAGACGAAATAAAACAGGCCTAGTGTCTTCCTCCTGGGAGCGGCAGTACTTCTTCACCCAGGGAGGGAACCTGATGGGCCAGGCACGAGGGCATGTAGCTGGGGGTCTGGTCATGGACATCGATAATTGCTCTGTCATGGCCGTGGACTGTGAGGACCGACGCTTCTGCTTCCAGATCACATCCTTTGACGGCAAGAAGGTGGTCATATTGCAGGCAGATAGCAGAAAGGACTGTGAAGAGtggaTTGCAACTATAAACAACATCTCAAAGAGGATATATCTGAGTGAGAACCCAGAGGAAATTGCAGCCAGAGTGAACCAATCAGCTCTTGAGGCTGTGACACCGTCTCCCTCCTTCCAGCAGAGGCATGAGAGTATGCGGCCGACCACACAAGGGCGGTCCCGGGCAGTGCGGACCAGCAGTGTGAGCTCAGTGGGCTCTGAGACGGCCTCACcggccctctctgtcctctcattgGACGCCCTGGTGGCTCCTGACACGCCCATCCAGTTTGACATCATCTCTCCAGTCAGCGAGGAGTACGCAGGCCAGGCCAAGGCTGCGGGACAGGGCAGGACCAACCCGTTTGGTGAATCAGGAGACACTCCACCTGAGGAGAGTGAAgACTCCATCCTGCACCAGCTGTTCATTGTGCGTTTCCTGGGTTCTATGGAGGTGAAGAATGCAGACAGCTCTGACGTCATCTATGAGACCATGAGACAGATCCTAGCAGCCAGGGCCATACATAACATCTTCAGGATGACTGAGTCTCACCTGCTGGTCACCTGCGACTGCCTCAAGCTCATCGATCCTCAGACACAAGTCACACGGCTGAGGTTCCCTCTTTCCAGTGTGGTGGTGTGTTCGTCCCACCAGGAGAACAAGCGTCTGTTTGGATTCGTCCTGCAGACTGCAGAAGGCAGGGTGGATGGACGACCTGTCACTGTCTGCTATATCTTTGAGTCCAACAATGATGGGGAGAAGATATGTGACAGTGTTGGGCTGGCCAAACAGATCGCTTTCCACTCAGAGATGGATCGCAAAGCTACAGAGAAGAAGGAGGAGCAGGACAAGGCCAAGGAGAAACAGCAGGAGGAGCTGAGTAAACAGAAACAGATTGAAAAGGACCTGGAGGAACAGAGCCGTTTAATCGCAGCCTCCAGTCGCCCCACCCCCCCTGCTCCTAACGCTGATGGGCAGTTCCTGGTGCTGAGCAAAAGCCAATCAGAGGACAGTGATGCAGGACCGGAGGGGCGGGAGAAGGGAGAATCGGAGGCCTAAAAGAATGGAAGGGAAAGAGCTTTCATCAGATACTACTTTGGACCATCAAACTACCGGAAATCGATCATCTTCAATGGAAGGAGACGACATGAGAAGACTTTGAGCAATTGTTTGTGATTTTTGGTCCATAGGGcaggcacaattggcccagcgtcttctggATTAGGGGTAGGCCgttactgtaaataagaatttgttcttaattgacttgcctagttaaataaatgttaaaaagtCACCTATGTTTGAGCCAATGTTCTTTTCTGAACAGACAACTGAACAAGCTTGGCGATGTCTTACTACAAAGTACTATCCGGTGACAAATCGCAGTTAGAGCGGGAGTTGGTTCCTTGGCTCCTCAACCCTGGGCCTCGGCTTAGCCTCTATGGGTTTTTCTCTGGCTCCTGCATTGTTTTACAGAGGAGTTGGACTGCAAATAGACTTTATAACATTAAACAAAGATGGATTAAGACCCCACTAAACTTAACAAAAGAAGAGGAGAAATAAATGTGTGTGAATGACTGAACACTCAAAGAATCCTTCCGGATCTTTCTCATCCTCCATATGTAAATCATGTATTATATACTGGTACTTGTATTCAGAGGAAATGTAGAAGGAGATGATTAATGCTTTTaagcttttattttattttttataatcagGGTGACTCTGAATACCATTGGCATACTAGAAAACATAGAGATTATAGAGTGTATTAATTTGTTGGGGGAGGGAAGACATTGCACATGTTAATACTGTAATGACATGTATAAAATACTTGTTTATGTCAACCATATACATGTTGTCTTCCATTTAGCTAACACGCTTGCATGTGCTTTGGATCCCATCATTCAAGATGAATTGCCACGCTTGTTTTTCTTCTATAATGAATATTTACCCTTTTCAATTAACCGTTTGAGTGTGTTTGGTTTCAAGATGAGAATTTAGATCTCTAATCATTTAACCCCAAACACCAATAATGGTTTCTCGTTCAATGGATCAGACTACTTGCCATAGCCCAACAGACCTTGTGCCTGAGGTGTAATGTATTCATCTCATTGGTTGGAACAAAGAACAGCACTATAATACAAAGTTCCAAATCAGGGCATTGACAATTAAAAGGAAAAATGGGATCTATGAACTGTTTGTTTTTCCCCATTATGTGTGTTAATCCATTTTATGTTTCGAAATGGTTTGTGTTTTTCTCAGATTTCTGTATAAAGAAATgcactacatacagtatgtatgctaTTGAACAGTTCGTCTGAAATGTTCCTCACCCTTAACCCATTGCTATGTAAGTTTGTGCTGAGCTCTGACTAAGTTTATCACTTATCAACTCATAGTGAACACATGTTGCAGTGACATGATGCAGGAAAAACTATCATATCAACAAAGTGGAATTGATTTGACATATTACTGATAATGAAAGTTGAGTCTACTTTATTATCATTTTGGGGGAAGGTGATTAAAGGAGTAGTTAGGAACTGTTACTGAGATGTTAATAGGGGGGACTGCACTTTAATTATTGATGCAGGGTGAAAAAGGATCATGTTTACTCTATATACTTCAGTGATTACTGTTGCAGTCTTAAATAGCTTTTCAACAATAAAGGTACACTAATT

Function

symbol description
appl1 Predicted to enable identical protein binding activity. Located in early endosome. Is expressed in nervous system; neural keel; neural tube; and pronephros. Human ortholog(s) of this gene implicated in maturity-onset diabetes of the young type 14. Orthologous to human APPL1 (adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1).

NR:

description
DCC-interacting protein 13-alpha

GO: NA

KEGG:

id description
K08733 APPL1, DIP13A; DCC-interacting protein 13 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950786.1 False 3911 mRNA 0.46 22 83576027 83592619
XM_036950787.1 True 3908 mRNA 0.46 22 83576027 83592619

Neighbor

gene id symbol gene type direction distance location
LOC110494735 asb14 coding upstream 843 83562178 ~ 83575184 (+)
LOC110494734 LOC106566095 coding upstream 13873 83560011 ~ 83562154 (+)
trnae-uuc-57 NA coding upstream 51826 83524130 ~ 83524201 (+)
trnar-acg-55 NA coding upstream 52108 83523847 ~ 83523919 (+)
trnae-uuc-56 NA coding upstream 52499 83523457 ~ 83523528 (+)
hesx1 LOC106582615 coding downstream 143 83592762 ~ 83595541 (+)
irak1bp1 irak1bp1 coding downstream 11020 83603639 ~ 83608888 (+)
LOC110494740 LOC106566091 coding downstream 36569 83629188 ~ 83630857 (+)
LOC110494741 il17rd coding downstream 49826 83642445 ~ 83701923 (+)
LOC110493277 arhgef3 coding downstream 111544 83704163 ~ 83809312 (+)
G1497947 NA non-coding upstream 47205 83528602 ~ 83528822 (+)
G1497916 NA non-coding upstream 57072 83511112 ~ 83518955 (+)
G1497938 NA non-coding upstream 105259 83459338 ~ 83470768 (+)
G1497934 NA non-coding upstream 115185 83452852 ~ 83460842 (+)
G1497974 NA non-coding downstream 13039 83605658 ~ 83605866 (+)
G1497977 NA non-coding downstream 15105 83607724 ~ 83608208 (+)
G1497978 NA non-coding downstream 26237 83618856 ~ 83622608 (+)
G1498007 NA non-coding downstream 95047 83687666 ~ 83689358 (+)
G1496351 LOC106566032 other upstream 1406277 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 1742926 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 1973870 81432188 ~ 81602161 (+)
G1495362 NA other upstream 2237864 81337017 ~ 81338163 (+)
G1495346 NA other upstream 2282101 81293440 ~ 81293926 (+)
G1497918 NA other downstream 21646 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 287313 83879805 ~ 83890067 (+)
G1498583 NA other downstream 533218 84125837 ~ 84174177 (+)
G1498913 NA other downstream 903310 84495929 ~ 84497398 (+)
G1498912 NA other downstream 923498 84516117 ~ 84567678 (+)

Expression


Co-expression Network