hesx1 (LOC106582615)


Basic Information

Item Value
gene id hesx1
gene name LOC106582615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83592762 ~ 83595541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570058.2
GCATTGAGGACGTCCCGTGTATCGGAATCCTCCTTTCCATTCAGGGAGAAAAGTAAACAAGTGTGCTATTCGTTTAAAGCTCCCGTTGTTCTGTTCGCTGAAGCGAGCACTAATCTGCTCTTAATCGGTCGAAtcgaggaagaacaatgattacACGCGGATTTCCAGCAACATGTCAACCTGGTGCTGTGACGGCTTTTGTTTGGCCCCAACATAATTCACTGTCCTATATGCATCACAACGGCAGGAAGAGGGAACATTCATCAGGATTAAACCTGATAGTATTGGAGGATTGTTATTCGTTTATATTTCCATGGCAAAAATTTACAAAATGGTTACTTGACTGGCCCCGCATAATGACAATATAGGCTAAAAGTGGGAATGGGTTTGATTTTCAACCTTGGTAGTTTTAATGAAAAGAATGGCACTGGTGTTTCGTTAAAGTGAGACAATTAGAAACGGAATTACTTGCCTAAAGAGATAATACCTTTATGCCTTGGTCTGTTTGCAACCCCCAAAATCCGAATAGGGGTCTCCAATTCATATGCTAAATTTTAAGAACCTCCGGTTTTATTTAGTGACGTATATATATCCCAGAATCGTTAAAAATCGTAACCTGAGCGGACAGCTTCCAGAAGATAGTTGGTTGACACTATGGCTATATCTACAGTTAGTTGCCAGATCAGGCAGGTTGACGCACGGCCAGTTTTCACCATAGACAGAATCCTTGGGTTGGACTTGGACAGACAAGAACTACGCAATGTGTCCCTGAAGCTGTATCGACCATGGACAGAGTTGGAAACAACCAAACAGAGAAGTCACATTACAGTAAAAGGATCACCGAAGTCTTCGTCTGAGATTAAGAGAAAAGAAGAGGAACATAAACTCAACTGTAAACACTTTACAGAGTCCCACAGGAGAACATTGAATTGGTACATCGGGCGCAGGCCGCGGACGGCATTCAGTAGTGCACAGATTGAGGTCCTGGAGAGTGTGTTCCTCATCAACTCCTACCCGGGTATTGGCATCAGAGAAGAATTGGCACAGAGACTGCAACTGGAGGAGGACAGAATACAGATTTGGTTCCAGAACCGCAGGGCCAAGCTGAAACGTTCTCACAGAGAGTCACAGTTCCTCATGGTGAAAAAAGCCTTTGCAGATCTTAAGGACAAAGAAGAGGATTAATGCTAAAACAAGGACACAAAAAGATTTACAGTACTTTTATTCTAGggatctctcactctctctctggtataTGTCTAATATATTATATTGTGTAAATGTCAATTTGTCTAGGGTATGTACACATTTTAATAAACAGATCAGATCATTGACAAACAACAAGGCC

Function

NR:

description
homeobox protein ANF-1-like

GO:

id name namespace
GO:0030900 forebrain development biological_process

KEGG:

id description
K09354 HESX1; homeobox protein expressed in ES cells 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570058.2 True 1348 mRNA 0.42 4 83592762 83595541

Neighbor

gene id symbol gene type direction distance location
LOC110494736 appl1 coding upstream 143 83576027 ~ 83592619 (+)
LOC110494735 asb14 coding upstream 17578 83562178 ~ 83575184 (+)
LOC110494734 LOC106566095 coding upstream 30608 83560011 ~ 83562154 (+)
trnae-uuc-57 NA coding upstream 68561 83524130 ~ 83524201 (+)
trnar-acg-55 NA coding upstream 68843 83523847 ~ 83523919 (+)
irak1bp1 irak1bp1 coding downstream 8098 83603639 ~ 83608888 (+)
LOC110494740 LOC106566091 coding downstream 33647 83629188 ~ 83630857 (+)
LOC110494741 il17rd coding downstream 46904 83642445 ~ 83701923 (+)
LOC110493277 arhgef3 coding downstream 108622 83704163 ~ 83809312 (+)
LOC110494743 LOC106566086 coding downstream 215217 83810758 ~ 83837755 (+)
G1497947 NA non-coding upstream 63940 83528602 ~ 83528822 (+)
G1497916 NA non-coding upstream 73807 83511112 ~ 83518955 (+)
G1497938 NA non-coding upstream 121994 83459338 ~ 83470768 (+)
G1497934 NA non-coding upstream 131920 83452852 ~ 83460842 (+)
G1497974 NA non-coding downstream 10117 83605658 ~ 83605866 (+)
G1497977 NA non-coding downstream 12183 83607724 ~ 83608208 (+)
G1497978 NA non-coding downstream 23315 83618856 ~ 83622608 (+)
G1498007 NA non-coding downstream 92125 83687666 ~ 83689358 (+)
G1496351 LOC106566032 other upstream 1423012 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 1759661 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 1990605 81432188 ~ 81602161 (+)
G1495362 NA other upstream 2254599 81337017 ~ 81338163 (+)
G1495346 NA other upstream 2298836 81293440 ~ 81293926 (+)
G1497918 NA other downstream 18724 83614265 ~ 83634495 (+)
LOC110494749 LOC106566083 other downstream 284391 83879805 ~ 83890067 (+)
G1498583 NA other downstream 530296 84125837 ~ 84174177 (+)
G1498913 NA other downstream 900388 84495929 ~ 84497398 (+)
G1498912 NA other downstream 920576 84516117 ~ 84567678 (+)

Expression


Co-expression Network