LOC110494740 (LOC106566091)


Basic Information

Item Value
gene id LOC110494740
gene name LOC106566091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83629188 ~ 83630857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570064.2
CTACGAAGTATATATTATTTTTAGAAGTGAAACAGGAAGTCTGTCAGAAACTTGAGACATGCTACACAAGGCTACacttcaaaatcatgggcaaacTGTCAATCTTTTTGTTTGTTCTTTCATTTTACACCATTGTCAACGCAGGGGTTACCATATTACAGACAAAATAAATGACGAAGCTCAGGATGGAAGTTATGTACTTGGAACTATGTACCACCACATGAAAGAGAGATCATTTCGCCTAAAGCACCACTTAAATCTCACGGAAGGTGTTCACGTTCAGCAAAGAATTGGTGGCTGTGAGATATTGCACAATGGTGAACCGGCCCTGATCATGACAAAGAACTCTTTTAATGGAATTTTTGCAGATTATGCGGTATATTACAACATGACACATTTTACATATGATTCTGGGCAACTCCTACTAGGATATAATTGGATGAGGCAAGCAACTGAAAGAACACTTTATGCTAATGTTTGGCTTCCTATTTGCATCAACACACTGAAAAAATGCCTGAACAGAGAGAAGAACTTTGTGATGCGGAGAGTGCCTCCCAGACTCAGGTTGATAAAGAAAGAGGTTTCTGGAGACCTCCAGGTGATCTGCCTGGCGTTTGGTTTCTACCCCCGCCACATCAACTTGACCCTGCTGAGAGACGGCCATCCAGTGGCAGAACAGGAGCTGACAGGGGGGGAGGTACTGCCTAGTGGAGACGGGACCTACCAGCTGAGGAAGAGTATTTATGTCAGTACTGAGAAGCTAAGGGAGAAACACAACTACACCTGCACTGCCTCTCACCTCAGTCTGAACAACAAGCTGGATGTCAGTTGGGAGTCTGGGGCAGAGAGAGTTCACCTATTCATCCTCTCAGCTCCACTGGTGATGGCGCTGATTGTTATTCTGTTCTGCATTTTAATTTGCCTCGCAAGGAGGATACGCGCCGCATCGCAGAATTTGCAACTAGCCAGCGTTGATGCATTAGAGGCAGATGAAAGGAACTTGTCATCAGATTCTGAGATCTAATATTTTTTGGGGGACACTGATGCAACTTTGTCAATTCACAATGACACCTATGACTATGAGAGCAGACACAAAATGTGCcaatcattattttattattggTTGATTTCCCAACCCCACAACAAACAACTATTAAAGGATCAAGTTGTGGAGACTGTTGACAATTACAAATATCTGGGCATTGGTCCAGATTTGcatgtatatattttacattaacAAAAGTAATCTTTTAATCATTTCAAATCATGACTTTTCATTAATTACACAATACACTTTATATCTGTGTTGTATTTCCTGATATCCAGTATCTAAACCAGGAGACagtggtgtgtatttatgggtGCCAAGGGAAGCCGGGCTTCCCCAAAGAatttacaaagaaaaaaacattaaatcatttatattttgtc
>XM_021570063.2
GTATATATTATTTTTAGAAGTGAAACAGGAAGTCTGTCAGAAACTTGAGACATGCTACACAAGGCTACacttcaaaatcatgggcaaacTGTCAATCTTTTTGTTTGTTCTTTCATTTTACACCATTGTCAACGCAGGTTCAGGATCACATTCTCTGTGGGCACTTGCAACATACATAATCGGAGAGACACCTTTCCCTGAGTTTACAGTTGTGTTGATGTTGGATGATGTTCAAATAGGTTACTATGACTCCAACATTAAACTGTCTGTCTACAGGGGTTACCATATTACAGACAAAATAAATGACGAAGCTCAGGATGGAAGTTATGTACTTGGAACTATGTACCACCACATGAAAGAGAGATCATTTCGCCTAAAGCACCACTTAAATCTCACGGAAGGTGTTCACGTTCAGCAAAGAATTGGTGGCTGTGAGATATTGCACAATGGTGAACCGGCCCTGATCATGACAAAGAACTCTTTTAATGGAATTTTTGCAGATTATGCGGTATATTACAACATGACACATTTTACATATGATTCTGGGCAACTCCTACTAGGATATAATTGGATGAGGCAAGCAACTGAAAGAACACTTTATGCTAATGTTTGGCTTCCTATTTGCATCAACACACTGAAAAAATGCCTGAACAGAGAGAAGAACTTTGTGATGCGGAGAGTGCCTCCCAGACTCAGGTTGATAAAGAAAGAGGTTTCTGGAGACCTCCAGGTGATCTGCCTGGCGTTTGGTTTCTACCCCCGCCACATCAACTTGACCCTGCTGAGAGACGGCCATCCAGTGGCAGAACAGGAGCTGACAGGGGGGGAGGTACTGCCTAGTGGAGACGGGACCTACCAGCTGAGGAAGAGTATTTATGTCAGTACTGAGAAGCTAAGGGAGAAACACAACTACACCTGCACTGCCTCTCACCTCAGTCTGAACAACAAGCTGGATGTCAGTTGGGAGTCTGGGGCAGAGAGAGTTCACCTATTCATCCTCTCAGCTCCACTGGTGATGGCGCTGATTGTTATTCTGTTCTGCATTTTAATTTGCCTCGCAAGGAGGATACGCGCCGCATCGCAGAATTTGCAACTAGCCAGCGTTGATGCATTAGAGGCAGATGAAAGGAACTTGTCATCAGATTCTGAGATCTAATATTTTTTGGGGGACACTGATGCAACTTTGTCAATTCACAATGACACCTATGACTATGAGAGCAGACACAAAATGTGCcaatcattattttattattggTTGATTTCCCAACCCCACAACAAACAACTATTAAAGGATCAAGTTGTGGAGACTGTTGACAATTACAAATATCTGGGCATTGGTCCAGATTTGcatgtatatattttacattaacAAAAGTAATCTTTTAATCATTTCAAATCATGACTTTTCATTAATTACACAATACACTTTATATCTGTGTTGTATTTCCTGATATCCAGTATCTAAACCAGGAGACagtggtgtgtatttatgggtGCCAAGGGAAGCCGGGCTTCCCCAAAGAatttacaaagaaaaaaacattaaatcatttatattttgtc

Function

NR:

description
major histocompatibility complex class I-related gene protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570064.2 False 1431 mRNA 0.41 2 83629188 83630857
XM_021570063.2 True 1563 mRNA 0.41 2 83629195 83630857

Neighbor

gene id symbol gene type direction distance location
irak1bp1 irak1bp1 coding upstream 20300 83603639 ~ 83608888 (+)
hesx1 LOC106582615 coding upstream 33647 83592762 ~ 83595541 (+)
LOC110494736 appl1 coding upstream 36569 83576027 ~ 83592619 (+)
LOC110494735 asb14 coding upstream 54004 83562178 ~ 83575184 (+)
LOC110494734 LOC106566095 coding upstream 67034 83560011 ~ 83562154 (+)
LOC110494741 il17rd coding downstream 11588 83642445 ~ 83701923 (+)
LOC110493277 arhgef3 coding downstream 73306 83704163 ~ 83809312 (+)
LOC110494743 LOC106566086 coding downstream 179901 83810758 ~ 83837755 (+)
LOC110494746 LOC106566088 coding downstream 219608 83850465 ~ 83860051 (+)
LOC110494747 LOC106566085 coding downstream 232961 83863818 ~ 83868195 (+)
G1497978 NA non-coding upstream 6580 83618856 ~ 83622608 (+)
G1497977 NA non-coding upstream 20980 83607724 ~ 83608208 (+)
G1497974 NA non-coding upstream 23322 83605658 ~ 83605866 (+)
G1497947 NA non-coding upstream 100366 83528602 ~ 83528822 (+)
G1498007 NA non-coding downstream 56809 83687666 ~ 83689358 (+)
G1497989 NA non-coding downstream 71609 83702466 ~ 83702810 (+)
G1498156 NA non-coding downstream 117531 83748388 ~ 83748612 (+)
G1496351 LOC106566032 other upstream 1459438 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 1796087 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 2027031 81432188 ~ 81602161 (+)
G1495362 NA other upstream 2291025 81337017 ~ 81338163 (+)
G1495346 NA other upstream 2335262 81293440 ~ 81293926 (+)
LOC110494749 LOC106566083 other downstream 249075 83879805 ~ 83890067 (+)
G1498583 NA other downstream 494980 84125837 ~ 84174177 (+)
G1498913 NA other downstream 865072 84495929 ~ 84497398 (+)
G1498912 NA other downstream 885260 84516117 ~ 84567678 (+)
LOC110493280 LOC106566113 other downstream 1046683 84379789 ~ 84685383 (+)

Expression


Co-expression Network