LOC110494747 (LOC106566085)


Basic Information

Item Value
gene id LOC110494747
gene name LOC106566085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83863818 ~ 83868195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570079.2
ACAGCGGGCATTCCTTATCACGTGATCAGCGAGAGCATCTTTTAGGTCCATTTTGGATGATAGCGAGAGCTCTTGTAGCTAGCTACGACACCCGAAAATGACTAAATTgcagtttttaaatgtatttttgaccGAGCGGCTTATGCTCGCTGCCCAGGAGATCTATAAATCCGTCGAAGACACGATTTTGGAATACCAAGAGGAGATTGCGCtcagggagagggagaacgaCCATCTGAGACGTCGGCTTCGAGACGCTGGGATTGAAATATGGCCAGACCGTCAGTCCATGGcactattggaggaggaggatagcGAGCATCCCCGCCGGGAGTGGAGCCCCAGTATGGGCCATGAGGAGCGCATCCCCATCCTGATCAAGGAGAAACGGGAGCTCAGGTACAGCCAGGGGGACGATCAGCTTCGCGGCCACGGCTCCTGCAGCACCCCAGAGTCCATGTTCACCCCTCCCCGCGTCAGCAACGAATACCCCCAGGACCCTCCCCACTCCTCCAACCTGCCCCAGAACCCGTCggtggagaacagagagagggagcctGGTCCCAGAAGCTCATCCAGACACGTCAAATCAGAAGGGTCCCACAGAGGCTCATCGTCGTCTTCATCCAACAGCGGCCCGCAGCCCCTGGCCACAGTCAACCCCAACTGCTCCAACGAGAACATTGACATCATTGGGGTGGAGAACGGAGGGCAGATGTCGGCGGCTAAAGGACGAGCCGGCGGGAGCAGAGGTCAGGGCTCCCACTTAGGCAACCAGGGCGCTAATTCCACCGCGGCCGCAGAGTGTGGAAAATCTCCTCTCCAGGTGCACGTGTCGTCGTTCTGCTGCAGGGTGTGCGGGGAGACGTTCAGCCACGTCGGACACCTGCATGTCCACGTCCAGGTGCACACCCGAGAAAAGCCGTATCGCTGCGGGGTGTGTGGTAAGTGCTGCAGCTCCTCCGGCAGGCTCCAGGAGCACGCCAGGagtcacactggagagaagccgtaCCGCTGCCAGAGCTGTGGAAAAGGATTTACCCAGATGGCCCATCTCAAGGTCCACATGCgtatccacacaggagagaaaccctacagctgcccCGTGTGTGGCAAGTGTTTCAGCCGCTCTGACAAAATCAAACGTCACCTCCAGACCCACAGCCGCGAGGGCACCTACTTCTCGGGGCAGTGAGATGAGGGAGACGCCACCGCTGGTTGTTCTTGTTGTTAATGAACGACTGAGTCTCGGTATATGAATGAATTGCTGATTATGGGACATTTTTAAAAAGCTAAAATTGCTGCCACTAAGACGaggcttgttttttttctcactctctctctctgagctattCTGTGACTTTCTTAGAATGTTTTATCTCTCCTCTAAGTAACAGTTCTCTCCATGCCATAGTCTATCTCTCATGCAATAGGATTTGTATTGCAGTATAGTCAATTTAGTATGTGTCCATTTTTTTCTTTTTGTATTTGAGTTATTAGCTAGTATTTCCTAATTATTTAGTATTTTAGTAATAAGCTTGATAGCATGATGATAATGAAGTCTTCCGCTATGCGCCTTGAACGGAGTGCATTCAGGATTGCAACAATGCAGCGTTCCAATACGTGGTCTTGCCCCAGATGATTTGCACAGGGCCAATTTACACCAATTTCAAGTTTCTAAAAGCAATGGTTATTTtagaatttaatttatttttgataAAGTATATCACAGCCTCTTCTAACACCCTGAAATCTGATTTCCTGAATCACCTGGCTGAAATTCGTAAGCTgtttttatttgtgttttttaATGAACACTGGCTAACCGTATGGGCATCGTTTATAAACAGTTGTCCATTCTTTGAGTTTCCAAATATGGATATAAAGTAGACATATTAGCCATTGTTAGTTCGGGTGAGGTCAGGGGTGGGCATTACGGTTAGCAATAGCCCTGCCTGCTGTATTCTATGTTTCCGTACGGTTAGCCACATAAAGCCTCCCTGATATACTCAATTTTAAAGAAGCATTGCCTCTCCCTCAATCACATCAAcagcgtcattgcattttggtacaccagaagtattctgaacaaaaatataaacgtaacaatttcaactattttactgagttcatataatgaaatcagtcaattgaaataaattcattatgtcctaatatatggatttcacatgaatgggcacGGGCACAGCCATGgttgggccttggagggcataggcccacccactggggagccaaggcCAGCcagtcagaatgagtttttcctacAAAGGTGCTTTATTACAATTTAGACACACATATcccttagtttcatcagctgtccgggtggctggtcacaGACAATCCAGCAAGTGAAGAAGTCTGATGTGGAGGTTcagggctggcgtggttacacttgATCTGCGGttctgaggccggttggacgtactgccaaattctctaaaatgacttgaggcggcttatggtagagaaattaacattaaattctctggcaacagctttggtggacattcctgcagtcagcatgccaattgcatgctccctcaacttgagatgtctgtggcattctgttgtgacaaaactgcacattttagagtggccttttgttgtccccagcacaggGTGCACCTGTGTCAAGATCAGCTtgttgatattccacacctgtcaggtggatggattatcttggcaaacaaGAAATGCTCcatacagggatgtaaacaaatttgtgcaaaacatttgagagaaatacgctttttgtgtatatgaaacatttctggcatcttttatttccgctcatgaaacatgggactaacacttatttttgttatatttttgttcagtatacatacatTTCCAATAGAACGCTGCATTgtagtgcgttctgtgtggtgcatgcGTTGGATATATCCAACGTATGCATCAAATTGTATGGTAGAGATATGCGTTCAGTGTGGTGCATGCGTTGGATATATCCAACGTATGCATCAAATTGTATGGTAGAGATacgcgttctgtgtggtgcatgcGTTGGATATATCCAACGTATGCGTCAAATTGTATGGTAGAGATACGCGTTCAGTGTGTTTGCGTAGCAACGCAAAATGATATGCAATGGTGCTGTCAGTCTGATCAAGGCATTAGTCACGGTTGCAGAACTGTATACTGCCCCCTGAATTTCAGTCAACTTGTAACTGATACAATAACATACTATTGTCACAGAGGAGTCAACACCGAGACTGCTATTCTGCAAGATACATTTGACGTTGGTGATGATCATTCTGTGTATGACCACTATCTATCCCCCACCTCTGATGCGGATAGGGATTGTGTGTCCTCTAAGACCTGCACTACTACAGAAATTTAACCAACACGGTGCAGGGAAAGACCGATTCCTCAGCTGAGTCGTACAGTATTTTACCCTGTATGTGTCTGTGCTGCTTGTTTCAAGAGGATTGGTCCTGAGCTAGGTTGCTGCTGCACATATATTCACTATACTAAATATCTAGTAATGGTGGCCAGTTGTTTGCAagtgtaaaatacatttttttcagaCCCTAATCAAGGTTTCTCCTGGAATAAAAAGCACTTTAGTGTATATTGTGAAAGCATTTAATCCAGGAGTATTAAATGCCGAGCTGAGACCAATGCTCATGAACAAGCAGTAGGCCTATGGCCCATACCAGATACAAACCACAGCCCCCATCACTTAGGCCAAGTGTCTTGGGCAATAGGGGCTATGGGGTTGTCACAAGACAGGGCCTTTATCACCTCTCAGGACTGAGGCTACTACAGTAGGCCGTCTAACTCGATCGACATCCCTCCAGTCTCTTCCCCACAGTCTATTCTGGGACACTGCTGCTCCCACACACattactgtacagtgttgtaTCATTGTGTACTAAATGTTATTTTTTAATAAACTAGTAACTGAC

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570079.2 True 3950 mRNA 0.46 2 83863818 83868195

Neighbor

gene id symbol gene type direction distance location
LOC110494746 LOC106566088 coding upstream 3767 83850465 ~ 83860051 (+)
LOC110494743 LOC106566086 coding upstream 26063 83810758 ~ 83837755 (+)
LOC110493277 arhgef3 coding upstream 54506 83704163 ~ 83809312 (+)
LOC110494741 il17rd coding upstream 161895 83642445 ~ 83701923 (+)
LOC110494740 LOC106566091 coding upstream 232961 83629188 ~ 83630857 (+)
LOC110494749 LOC106566083 coding downstream 11610 83879805 ~ 83890067 (+)
LOC110494750 LOC106566084 coding downstream 22128 83890323 ~ 83892616 (+)
LOC110494751 LOC106566097 coding downstream 35726 83903921 ~ 83906399 (+)
LOC110494753 LOC106566082 coding downstream 136061 84004256 ~ 84017161 (+)
LOC110494755 LOC106566080 coding downstream 211358 84079553 ~ 84150390 (+)
G1498215 ccdc66 non-coding upstream 18848 83844040 ~ 83844970 (+)
G1498185 NA non-coding upstream 24714 83837928 ~ 83839104 (+)
G1498212 NA non-coding upstream 35343 83828236 ~ 83828475 (+)
G1498203 NA non-coding upstream 58107 83805407 ~ 83805711 (+)
G1498172 NA non-coding upstream 91432 83771757 ~ 83772386 (+)
G1498233 NA non-coding downstream 46708 83914903 ~ 83915105 (+)
G1498238 NA non-coding downstream 51195 83919390 ~ 83919689 (+)
G1498246 NA non-coding downstream 66701 83934896 ~ 83935104 (+)
G1498247 NA non-coding downstream 68032 83936227 ~ 83936427 (+)
G1498251 NA non-coding downstream 74044 83942239 ~ 83942540 (+)
G1497918 NA other upstream 229323 83614265 ~ 83634495 (+)
G1496351 LOC106566032 other upstream 1694068 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 2030717 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 2261661 81432188 ~ 81602161 (+)
G1495362 NA other upstream 2525655 81337017 ~ 81338163 (+)
G1498583 NA other downstream 257642 84125837 ~ 84174177 (+)
G1498913 NA other downstream 627734 84495929 ~ 84497398 (+)
G1498912 NA other downstream 647922 84516117 ~ 84567678 (+)
LOC110493280 LOC106566113 other downstream 809345 84379789 ~ 84685383 (+)

Expression


Co-expression Network