LOC110494749 (LOC106566083)


Basic Information

Item Value
gene id LOC110494749
gene name LOC106566083
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83879805 ~ 83890067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950797.1
TCACAACGATTTCTCCTCCCCAGATTTTCGAGTTCCCAGGCGTTGATGAACGCGGCAGATGTACATATTGTAACCGCGAGTCATTTTCTGATTGCGTCACCAGAAAGCGTCACATTCTCAAAAACCGTTTGGTTTATTGTGTTTATTTAGGGTGGATGTGCCCCGGCTGCCATCGACCCTCAAAATGACCAAATTacagtttttaaatgtatttttgaccGAACGTTTGATGTTAGCCGCCCAAGAGATATATAAGCAAGTGGAAGAGACAATATTAGAATACCAAGAAGAAATCatccagggaaagagagagaatgatcaattGAGACGCAAGTTTGGGATTCCATGGCCAGACCGAGAGCCCTTTGCTCCTGTAGAAtctgaggaggagggaggcatTGGGCAAAAGCAGGAACCAGAGCCAAGGCAGACTatggagaaacaggagagaaggACCAGGAAGGAGGAAAATGAGTTTAGAGGACCGGACTCTCAGTCTATATTCACTCCTTCCAATGGAAATGATGACTATGATCAgaacacacctcaacacacctCACTCAGTCAGTTCCAAACTCTCAccggggagagtagagagggaggctCTCTGTCCAGCTCATCAACATCCAAACCAATCAAAACAGAGACTGAAGGACTGGGTGTTTGTCCATTTGATCCGTCAAGTGACCCCAATACATTCTCTTCGTCAGTGAACCTTGACCTTTCGGCAGCACATAGTGAGAACAGTGACTATGAAAACACGGATGACTTCTGGTGCTGTGCGGTGTGGAGGGAAGgccaggaggaggtggagggtgtgGTTCCCAGTACCTGGGTGGTGGGCAGGAAGGTCCTGTGGCCTCCAGCCAATGGGAGGAAGGCTCTGAAAGAGAGACACAAGCCAGGAGCCAATTGGACGACATATGACCTTGTTAAAGTCAAACTATTCTCAGAATCTCTGGAAGAGTGTGAAGGCTACAGTAGGTCCAGTGATGAGCTCACTGACAACGGAGACAGTGAGCCCAACACgcaaaagaagaagaggaggaggaggaagaggaggacggGCACTGATCAGATACCTCAAGGAGGACCCAGTGGAGATGGAAGGATACACACAGGTGTGTCAGGATCCTCAAACTctcctcctctgaagaggagAGTGATGACGAAATCTGGAACCCTGGAGGAGAGTTCTGGAGCTCTAGAAGCAGAACCTCAGCTGGATCCGTCTGAGCTCAGAGGCCTTGATGACGCACTCAACAAGGAGAGCTACCTCATAGAGGGACCACACTCTTCTGACGCATGGGATTCTGTTTTTCCAACCTCTCAGTCCAGAGAGGGAACATTCCTAAGTGGACAGGATATGATGGGAAACCTGCTGAATTCAACCCAAAGTTTTCCTCTTCCAAATGACCAGTTCCAGGAGCAGGTCCTGGGTCTGCTGGTGGACATCAGACAGTCAGTGTGGGATCTAGGAGGAAGGGTGGGAGTTCTAGAACACTGGGGTGGTTCTAGGGGTTCTGGAACAGATTTCCATTTTGACGTGTGCAGAACCTACGAGGACATGGCCAACCTGGAGAAAGTTCTAGAGCCTCCTGAGGTCGCTGCCCAGATGAAACAGTTCCTGAGCAGGATCGGTGGGAACACCTTGAGGGAAAATGTCACCAGGGTGATGGAGAGGCTGATGACCAATGAACTGATGAGTACCTTCAACATGAAAGGAAGGAAAGGAACCAAGAAGAGTTTTCTCACACACTCCCTCAGTAAAATCATTATTGACAGCATCATGATCACCCACCCGTACGCCACAGAGTCTGCTGTGATGCACCTGATGGCCAACGTACTGAAGTACGCCCCAGACCGACGCGGAGGAGGAGGCAGACCCCCCAGACAGTCACCCCAGGTCCCCCATACCCAGAGACAGCAACACatccaacaacacatcaacatCAAACAGGAGCAAGACTATTAATGCCTGGACACCTTCCTTCTAGCCTGCGTACCTGTCTGTTTGTGCTATTATTGTCATGCCAAGGAGTGGGATGATAgcacagactggtacccaggctacctTCCTACTCTACCTGGGTCATATTCACTAGTAGTTACCAAACC
>XM_036950796.1
CACAACGATTTCTCCTCCCCAGATTTTCGAGTTCCCAGGCGTTGATGAACGCGGCAGATGTACATATTGTAACCGCGAGTCATTTTCTGATTGCGTCACCAGAAAGCGTCACATTCTCAAAAACCGTTTGGTTTATTGTGTTTATTTAGGGTGGATGTGCCCCGGCTGCCATCGACCCTCAAAATGACCAAATTacagtttttaaatgtatttttgaccGAACGTTTGATGTTAGCCGCCCAAGAGATATATAAGCAAGTGGAAGAGACAATATTAGAATACCAAGAAGAAATCatccagggaaagagagagaatgatcaattGAGACGCAAGTTTGGGATTCCATGGCCAGACCGAGAGCCCTTTGCTCCTGTAGAAtctgaggaggagggaggcatTGGGCAAAAGCAGGAACCAGAGCCAAGGCAGACTatggagaaacaggagagaaggACCAGGAAGGAGGAAAATGAGTTTAGAGGACCGGACTCTCAGTCTATATTCACTCCTTCCAATGGAAATGATGACTATGATCAgaacacacctcaacacacctCACTCAGTCAGTTCCAAACTCTCAccggggagagtagagagggaggctCTCTGTCCAGCTCATCAACATCCAAACCAATCAAAACAGAGACTGAAGGACTGGGTGTTTGTCCATTTGATCCGTCAAGTGACCCCAATACATTCTCTTCGTCAGTGAACCTTGACCTTTCGGCAGCACATAGTGAGAACAGTGACTATGAAAACACGGATGACTTCTGGTGCTGTGCGGTGTGGAGGGAAGgccaggaggaggtggagggtgtgGTTCCCAGTACCTGGGTGGTGGGCAGGAAGGTCCTGTGGCCTCCAGCCAATGGGAGGAAGGCTCTGAAAGAGAGACACAAGCCAGGAGCCAATTGGACGACATATGACCTTGTTAAAGTCAAACTATTCTCAGAATCTCTGGAAGAGTGTGAAGGCTACAGTAGGTCCAGTGATGAGCTCACTGACAACGGAGACAGTGAGCCCAACACgcaaaagaagaagaggaggaggaggaagaggaggacgggTGAGGGGCACGTTACCGGCACTGATCAGATACCTCAAGGAGGACCCAGTGGAGATGGAAGGATACACACAGGTGTGTCAGGATCCTCAAACTctcctcctctgaagaggagAGTGATGACGAAATCTGGAACCCTGGAGGAGAGTTCTGGAGCTCTAGAAGCAGAACCTCAGCTGGATCCGTCTGAGCTCAGAGGCCTTGATGACGCACTCAACAAGGAGAGCTACCTCATAGAGGGACCACACTCTTCTGACGCATGGGATTCTGTTTTTCCAACCTCTCAGTCCAGAGAGGGAACATTCCTAAGTGGACAGGATATGATGGGAAACCTGCTGAATTCAACCCAAAGTTTTCCTCTTCCAAATGACCAGTTCCAGGAGCAGGTCCTGGGTCTGCTGGTGGACATCAGACAGTCAGTGTGGGATCTAGGAGGAAGGGTGGGAGTTCTAGAACACTGGGGTGGTTCTAGGGGTTCTGGAACAGATTTCCATTTTGACGTGTGCAGAACCTACGAGGACATGGCCAACCTGGAGAAAGTTCTAGAGCCTCCTGAGGTCGCTGCCCAGATGAAACAGTTCCTGAGCAGGATCGGTGGGAACACCTTGAGGGAAAATGTCACCAGGGTGATGGAGAGGCTGATGACCAATGAACTGATGAGTACCTTCAACATGAAAGGAAGGAAAGGAACCAAGAAGAGTTTTCTCACACACTCCCTCAGTAAAATCATTATTGACAGCATCATGATCACCCACCCGTACGCCACAGAGTCTGCTGTGATGCACCTGATGGCCAACGTACTGAAGTACGCCCCAGACCGACGCGGAGGAGGAGGCAGACCCCCCAGACAGTCACCCCAGGTCCCCCATACCCAGAGACAGCAACACatccaacaacacatcaacatCAAACAGGAGCAAGACTATTAATGCCTGGACACCTTCCTTCTAGCCTGCGTACCTGTCTGTTTGTGCTATTATTGTCATGCCAAGGAGTGGGATGATAgcacagactggtacccaggctacctTCCTACTCTACCTGGGTCATATTCACTAGTAGTTACCAAACCAGTGTTAATTTCGTCAACAAAAATAGTGACTAAAATATTCAGCAAGCACCtatttttcagtggcaattgACAAGACTATAACTGAATAAATAGACCCAGAAAAAGAACTAGAAATAAACTAAAATGATATTTCATTCCAGTTGACTAAAACTGGACGAGAATAAAGGATCTGACTAAAATCAGATAAGTGGACTGGACAATAGTTTTTGGAGAGATTGAGAGCTTTTCTGTGATAAGCACAATTAATATTAGCAGTGGGAAGGACTTGCCACATCACCTGGTGAGCTGGGGGGGGGAGCAAGCGATGAGTGTGGACAGACCTTCGATTATACACATCGCTCAGGCGACTCTCTTGCTTCCTCGTAGCTAACCAGTCACCACCAACCTTCTGGTTAGCTACCCTTTGTCTGGTTAAGAAACACAAGCTGCTTTATGAAATGAAAAACAATAGCAGCGTTGAGTTTAATAGTGAAACAACAGTCTAGCTCCCTTGAGTTTAGAAAAGTAGGCTGTCTTTGATATTTGTAGTCTCGCTCAACCCTCCCACTTTCCCCACTGCATTTCATAGCCAGGTTCTGTAGCCAAGACTCCCTCTTTTCCTCAGAGAAAATGGCTTGAGAGATTTACCTTTCAAAAGATGTGACTCATAATACTTGGATCAGGACTCGAGCACTGGGTCTCGGGAGTTAAGCAATAGGGACTCGAACTTGAGCACAGAGGACTTGGGACTCGATTGGGATTTGAGGTTTAATGACTTGACTACATCACTGGGTGAAATGGTCATTGTGGCATCTGGGAAATGGTGAGAACAATGATGTGACGGAGGTGCAACCCACACTACTGTGTCAATACGTGATAGTACCTcgccccctccctttctctcctcccaccatccctccctgcgcttgtgtgtctgtttgttttttatgTAATGTGTAATATCTATGTAGGCTGAATTAGGAATTTACATGGCCCGTTAATACTTAAATATGTTTATCATATTTCTGCTGCTGGGAAGACAATAGGATGTTATGCAGAAAAATGTTTGTAGGACAAGGCTATGTATGTTTATGCACATGGGAGTCTGATTTATGTTTACTATGTGTTAATGAGGCAATACAAATGTGATGTGACTAACGGGCATTTAGTTGACAAGAAAAACTATACTAAATCATTATTCAAATAACAAAAATGTGAGTGAGACTTAATTATAATTTAGTCAAACTGACTAAGATTAGTCTAAATCTAAAAAAAATAGTGCCAAAATGAATACTGTAccaaacggactgaaacaggtactgcctggtcccagatcagtttgtgttctTGACAAGCCCATTGCtatcattgtcaagccaaacatgaGAATTGCATAAGAAGATTGCAAGAGACAGACTGGCATGCATCCAGGCTAACgcctactgtactgtaggcctacctgatgTACCCTCAGCCACCTTCCGCTTTAATGTTTCACATGTATTATACATGCACTGTATCTATCATCATTATTTGCCTTTTTGAATTTAGGATTAATTTAATCGTTTTTTAAGTTATGAAAATTAATTTTTGGAATGAATGATTGGAAGTAGTATTTTATAATGTACAAAGCCTTGACTTCTGGTTCTAAATAAAATGCATGCCTGGAGTTA
>TU1712638
TTTGGTTTATTGTGTTTATTTAGGGTGGATGTGCCCCGGCTGCCATCGACCCTCAAAATGACCAAATTacagtttttaaatgtatttttgaccGAACGTTTGATGTTAGCCGCCCAAGAGATATATAAGCAAGTGGAAGAGACAATATTAGAATACCAAGAAGAAATCatccagggaaagagagagaatgatcaattGAGACGCAAGTTTGGGATTCCATGGCCAGACCGAGAGCCCTTTGCTCCTGTAGAAtctgaggaggagggaggcatTGGGCAAAAGCAGGAACCAGAGCCAAGGCAGACTatggagaaacaggagagaaggACCAGGAAGGAGGAAAATGAGTTTAGAGGACCGGACTCTCAGTCTATATTCACTCCTTCCAATGGAAATGATGACTATGATCAgaacacacctcaacacacctCACTCAGTCAGTTCCAAACTCTCAccggggagagtagagagggaggctCTCTGTCCAGCTCATCAACATCCAAACCAATCAAAACAGAGACTGAAGGACTGGGTGTTTGTCCATTTGATCCGTCAAGTGACCCCAATACATTCTCTTCGTCAGTGAACCTTGACCTTTCGGCAGCACATAGTGAGAACAGTGTAAGTATGATGGGGGTGGAAGGTGGTGAAGGACTACTGTCAGGGTTTGAGGCGCTACAGATACCACTACACATGGAACAGTCCCTTCAAAATCACCACAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950797.1 False 2118 mRNA 0.50 13 83879805 83888415
XM_036950796.1 False 3787 mRNA 0.45 13 83879806 83890067
TU1712638 True 723 TUCP 0.46 2 83879932 83881188

Neighbor

gene id symbol gene type direction distance location
LOC110494747 LOC106566085 coding upstream 11610 83863818 ~ 83868195 (+)
LOC110494746 LOC106566088 coding upstream 19754 83850465 ~ 83860051 (+)
LOC110494743 LOC106566086 coding upstream 42050 83810758 ~ 83837755 (+)
LOC110493277 arhgef3 coding upstream 70493 83704163 ~ 83809312 (+)
LOC110494741 il17rd coding upstream 177882 83642445 ~ 83701923 (+)
LOC110494750 LOC106566084 coding downstream 256 83890323 ~ 83892616 (+)
LOC110494751 LOC106566097 coding downstream 13854 83903921 ~ 83906399 (+)
LOC110494753 LOC106566082 coding downstream 114189 84004256 ~ 84017161 (+)
LOC110494755 LOC106566080 coding downstream 189486 84079553 ~ 84150390 (+)
LOC110493278 LOC106582687 coding downstream 319440 84209507 ~ 84352493 (+)
G1498215 ccdc66 non-coding upstream 34835 83844040 ~ 83844970 (+)
G1498185 NA non-coding upstream 40701 83837928 ~ 83839104 (+)
G1498212 NA non-coding upstream 51330 83828236 ~ 83828475 (+)
G1498203 NA non-coding upstream 74094 83805407 ~ 83805711 (+)
G1498172 NA non-coding upstream 107419 83771757 ~ 83772386 (+)
G1498233 NA non-coding downstream 24836 83914903 ~ 83915105 (+)
G1498238 NA non-coding downstream 29323 83919390 ~ 83919689 (+)
G1498246 NA non-coding downstream 44829 83934896 ~ 83935104 (+)
G1498247 NA non-coding downstream 46160 83936227 ~ 83936427 (+)
G1498251 NA non-coding downstream 52172 83942239 ~ 83942540 (+)
G1497918 NA other upstream 245310 83614265 ~ 83634495 (+)
G1496351 LOC106566032 other upstream 1710055 82163138 ~ 82169750 (+)
LOC110494698 LOC106566043 other upstream 2046704 81828571 ~ 81847540 (+)
LOC110494696 LOC106582736 other upstream 2277648 81432188 ~ 81602161 (+)
G1495362 NA other upstream 2541642 81337017 ~ 81338163 (+)
G1498583 NA other downstream 235770 84125837 ~ 84174177 (+)
G1498913 NA other downstream 605862 84495929 ~ 84497398 (+)
G1498912 NA other downstream 626050 84516117 ~ 84567678 (+)
LOC110493280 LOC106566113 other downstream 787473 84379789 ~ 84685383 (+)
LOC110493283 LOC106566114 other downstream 899065 84789132 ~ 84793175 (+)

Expression


Co-expression Network