LOC110494759 (LOC106593203)


Basic Information

Item Value
gene id LOC110494759
gene name LOC106593203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84715579 ~ 84718668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950822.1
ATTTCCGTGTTGTCTTGAACTCACCGTCTGTCTTGTATATACTGCGTGTCACCAGTTGAGTCAAAAATAACGTCTAGCGGAGGTGTAGATCACTAGCTAGCTGTTCATCTAGCTACACAAAAGGATTGCTCTTTTTGTTTAATGATTTTATTCATTCGCGTAATTTTGTAGCCAGCGAAGTGAGCAGTAAATCAAATCCTCCTTCCTCCATAGCTATTAAGCTAGCTAGCGAGCCTGCTGACGTTTCCCCATTTGTGCTATCTcggctagctaactaactagctagctacagacaGAAGCAATGTCCATGTAACTGTCATCGATGCATTAAACATCTAGCGTTGTGTGACACATTCAGGTTGCAGGCAAGCTGTGGGTGGTCTGCCTAACACTGATTTGTTTGCCGAGTTCGATTAGtctcagcACCATGAGCCTGGTCCGCGTTGTGTGTCGTCACAAGACGGCCCTGGCCATTGGAGGAGTGTGCCTCTTTGCTGTTGTCCTCCTTTTCCTCGCCAAGTGTACCTCGGAGACCCTAAAACAGGGCCAGGCCGACCCTCCAGGCCTAGCCCCCCACGCTGCCCACTCCCAGCCCCGAGCAGAGCACCCTGAGCTCCCCTCACTCCCCAAAGACCTCTCGGCCTTCCTGGTGGTCCTCATCACCACAGGACCCAAGTACACAGAGCGCAGGAGCATCATCCGTAGTACCTGGCTGGCTAAGAAGGATCCGGAGGTTCTAGCTATGTTCGTGGTGGGAACCGAGGGTCTGCCCGCAGAGGATATGCAGAACATCAACACAGAGCAGGGGCGGCACAAAGACCTGCTCTTACTCCCCGCGCTGCGAGACTCGTATGAGAACCTGACCCTGAAGCTGCTGCACATGTACTCCTGGCTAGATCACAACGTAGACTTCAAGTTTGTGTTAAAAGCGGACGATGACACTTTTGCTCGTCTGGACCTGTTGAAGGAGGAGCTGAAGACTAAAGAACCCAGCCGGCTGTACTGGGGCTTCTTCTCAGGCCGCGGTCGCGTGAAGACAGCAGGGAAGTGGAGGGAGTCGGCCTGGGAGCTGTGTGACTACTACCTACCCTACGCCCTGGGTGGAGGCTACCTGCTCTCCTGCGACCTCGTACACTACATCCGAATCAACACGGCCTACCTCAAGGTGTGGCAGAGCGAGGACGTGTCACTGGGGGCGTGGCTAGCCCCGGTGGACGTCAAACGGACACACGACCCTCGATTCGACACGGAGTACAAGTCTCGGGGGTGTAGTAATAAGTACATGGTGACTCACAAGCAGAGCCTGGAGGATATGTTGGAGAAACAGCAGATGCTGCAGAGAGACGGGAGGCTGTGTAAGGAAGAGGTTAAACTCCGCCTGAGCTACGTGTACGACTGGAGTGTCCCGCCCTCACAGTGCTGCCAGAGGAAGGATGGAATACCCTGACctataacccctaaccttcctcacTTTGTCCACCCATGTAATTCtcatcagtgtttcccctactacgGTTACCCAGGCGGTGTGGTGCTCCCCCTAAGCCTTACTCCGTTCTGTGGTGCCCCCCCCTTCCCCGTAAAATATTGTGCTGCCTTCAGTTGACCTCCATAGAAGATGTCTGTTATGGCAGCCCGCCTATGAAAAGACCTGAGGAAAACACTGATCCCCATTCCCTTTTtatatatgtttatttatttatttattctggaGCCTTTGCTGACTGTCCTAAAGCACACTGGTACAGGACTGGGAGAGTGGACTGGGTGCAGCCACACAACAGGAGACCGTCATTTATTAATAACAGCACATGTATGTGGGGAGAAAGTGTACTTAAAGGAACCAGTATTCAGCTTTCTGGTTGGACAATGAAAAGACTTCGAGTCATTCCCGAATCTGTTTAAAATGTCCTGGAGACTCTAAGTGGAAGTGGCCCTATTTATGAATGCGATGGAAGTGATTCTCTTGATATGAAAATGGGGTGTATTGCTTCAGAACAATGGTAGAGAATGAGCCAGTCATGGGTTGGTGGTATTTGGCGTTGCATTGAGACCATGTGTAATATTGtaggcctctctctcccctgcttaCTGAGAGTTCTGTTCAGTTGGGAGATTTACCCTACCTGCTGTCTGTGTTTGGTTGACGTATTTACTAAGTGCAGTGATGGTCAACAGAGCTGTTTGTGTTCAGCTGAGCTACTCTACAGGCAATTTTCCAGCTGATATTCGGTTACTTttaaaccccccaaaaaaaagactGCTTCTGTTAATGTCGTTGAAGAAACCAACCGTTGTATTATTGTGACTGACTTTGACCGTGTCCTCATCACCAGTGTTGTTTTAAACCTACTGTCAAACTACTTCAAAATGAATGTTTAAAATATTTGgacctattaaaatgtttttgaaACATG
>XM_036950821.1
TTCCGTGTTGTCTTGAACTCACCGTCTGTCTTGTATATACTGCGTGTCACCAGTTGAGTCAAAAATAACGTCTAGCGGAGGTGTAGATCACTAGCTAGCTGTTCATCTAGCTACACAAAAGGATTGCTCTTTTTGTTTAATGATTTTATTCATTCGCGTAATTTTGTAGCCAGCGAAGTGAGCAGTAAATCAAATCCTCCTTCCTCCATAGCTATTAAGCTAGCTAGCGAGCCTGCTGACGTTTCCCCATTTGTGCTATCTcggctagctaactaactagctagctacagacaGAAGCAATGTCCATGTAACTGTCATCGATGCATTAAACATCTAGCGTTGTGTGACACATTCAGtctcagcACCATGAGCCTGGTCCGCGTTGTGTGTCGTCACAAGACGGCCCTGGCCATTGGAGGAGTGTGCCTCTTTGCTGTTGTCCTCCTTTTCCTCGCCAAGTGTACCTCGGAGACCCTAAAACAGGGCCAGGCCGACCCTCCAGGCCTAGCCCCCCACGCTGCCCACTCCCAGCCCCGAGCAGAGCACCCTGAGCTCCCCTCACTCCCCAAAGACCTCTCGGCCTTCCTGGTGGTCCTCATCACCACAGGACCCAAGTACACAGAGCGCAGGAGCATCATCCGTAGTACCTGGCTGGCTAAGAAGGATCCGGAGGTTCTAGCTATGTTCGTGGTGGGAACCGAGGGTCTGCCCGCAGAGGATATGCAGAACATCAACACAGAGCAGGGGCGGCACAAAGACCTGCTCTTACTCCCCGCGCTGCGAGACTCGTATGAGAACCTGACCCTGAAGCTGCTGCACATGTACTCCTGGCTAGATCACAACGTAGACTTCAAGTTTGTGTTAAAAGCGGACGATGACACTTTTGCTCGTCTGGACCTGTTGAAGGAGGAGCTGAAGACTAAAGAACCCAGCCGGCTGTACTGGGGCTTCTTCTCAGGCCGCGGTCGCGTGAAGACAGCAGGGAAGTGGAGGGAGTCGGCCTGGGAGCTGTGTGACTACTACCTACCCTACGCCCTGGGTGGAGGCTACCTGCTCTCCTGCGACCTCGTACACTACATCCGAATCAACACGGCCTACCTCAAGGTGTGGCAGAGCGAGGACGTGTCACTGGGGGCGTGGCTAGCCCCGGTGGACGTCAAACGGACACACGACCCTCGATTCGACACGGAGTACAAGTCTCGGGGGTGTAGTAATAAGTACATGGTGACTCACAAGCAGAGCCTGGAGGATATGTTGGAGAAACAGCAGATGCTGCAGAGAGACGGGAGGCTGTGTAAGGAAGAGGTTAAACTCCGCCTGAGCTACGTGTACGACTGGAGTGTCCCGCCCTCACAGTGCTGCCAGAGGAAGGATGGAATACCCTGACctataacccctaaccttcctcacTTTGTCCACCCATGTAATTCtcatcagtgtttcccctactacgGTTACCCAGGCGGTGTGGTGCTCCCCCTAAGCCTTACTCCGTTCTGTGGTGCCCCCCCCTTCCCCGTAAAATATTGTGCTGCCTTCAGTTGACCTCCATAGAAGATGTCTGTTATGGCAGCCCGCCTATGAAAAGACCTGAGGAAAACACTGATCCCCATTCCCTTTTtatatatgtttatttatttatttattctggaGCCTTTGCTGACTGTCCTAAAGCACACTGGTACAGGACTGGGAGAGTGGACTGGGTGCAGCCACACAACAGGAGACCGTCATTTATTAATAACAGCACATGTATGTGGGGAGAAAGTGTACTTAAAGGAACCAGTATTCAGCTTTCTGGTTGGACAATGAAAAGACTTCGAGTCATTCCCGAATCTGTTTAAAATGTCCTGGAGACTCTAAGTGGAAGTGGCCCTATTTATGAATGCGATGGAAGTGATTCTCTTGATATGAAAATGGGGTGTATTGCTTCAGAACAATGGTAGAGAATGAGCCAGTCATGGGTTGGTGGTATTTGGCGTTGCATTGAGACCATGTGTAATATTGtaggcctctctctcccctgcttaCTGAGAGTTCTGTTCAGTTGGGAGATTTACCCTACCTGCTGTCTGTGTTTGGTTGACGTATTTACTAAGTGCAGTGATGGTCAACAGAGCTGTTTGTGTTCAGCTGAGCTACTCTACAGGCAATTTTCCAGCTGATATTCGGTTACTTttaaaccccccaaaaaaaagactGCTTCTGTTAATGTCGTTGAAGAAACCAACCGTTGTATTATTGTGACTGACTTTGACCGTGTCCTCATCACCAGTGTTGTTTTAAACCTACTGTCAAACTACTTCAAAATGAATGTTTAAAATATTTGgacctattaaaatgtttttgaaACATG

Function

NR:

description
beta-1,3-galactosyltransferase 6-like

GO: NA

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950822.1 False 2417 mRNA 0.50 4 84715579 84718668
XM_036950821.1 True 2356 mRNA 0.50 3 84715581 84718668

Neighbor

gene id symbol gene type direction distance location
LOC110493280 LOC106566113 coding upstream 30541 84379789 ~ 84685383 (+)
LOC118940500 NA coding upstream 232089 84480749 ~ 84483490 (+)
LOC110493278 LOC106582687 coding upstream 363086 84209507 ~ 84352493 (+)
LOC110494755 LOC106566080 coding upstream 565189 84079553 ~ 84150390 (+)
LOC110494753 LOC106566082 coding upstream 698418 84004256 ~ 84017161 (+)
LOC110494762 p38a coding downstream 13567 84732235 ~ 84765940 (+)
LOC110493283 LOC106566114 coding downstream 70506 84789132 ~ 84793175 (+)
si:dkey-33m11.6 LOC105030694 coding downstream 78520 84797188 ~ 84798988 (+)
ddx19 LOC106566108 coding downstream 121849 84840517 ~ 84848351 (+)
LOC110494765 LOC106566109 coding downstream 134657 84853325 ~ 84857469 (+)
G1499146 NA non-coding upstream 3163 84712130 ~ 84712416 (+)
G1499142 NA non-coding upstream 7293 84707974 ~ 84708286 (+)
G1499140 NA non-coding upstream 9297 84705942 ~ 84706282 (+)
G1499139 NA non-coding upstream 12068 84703188 ~ 84703511 (+)
G1499138 NA non-coding upstream 18233 84697129 ~ 84697346 (+)
G1499161 NA non-coding downstream 4864 84723532 ~ 84723805 (+)
G1499164 NA non-coding downstream 12641 84731309 ~ 84731684 (+)
G1499169 NA non-coding downstream 18644 84737312 ~ 84738187 (+)
G1499177 NA non-coding downstream 50980 84769648 ~ 84769979 (+)
G1499180 NA non-coding downstream 54216 84772884 ~ 84773169 (+)
G1498912 NA other upstream 149972 84516117 ~ 84567678 (+)
G1498913 NA other upstream 218181 84495929 ~ 84497398 (+)
G1498583 NA other upstream 541402 84125837 ~ 84174177 (+)
LOC110494749 LOC106566083 other upstream 834391 83879805 ~ 83890067 (+)
G1499159 NA other downstream 91863 84810531 ~ 84811185 (+)
G1499347 NA other downstream 496125 85214793 ~ 85216073 (+)
LOC110494772 LOC105007909 other downstream 550458 85269122 ~ 85288116 (+)
G1499374 NA other downstream 573117 85291785 ~ 85293121 (+)

Expression


Co-expression Network