LOC110493283 (LOC106566114)


Basic Information

Item Value
gene id LOC110493283
gene name LOC106566114
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84789132 ~ 84793175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950823.1
CTCTGCTCATCGCTGTCTGATGAGATGTCCTTCTTCctgttatagagagagagaggagagaggatatagaaGTGTTATTCCAGCACTGCATCACACTGCTCAGCCTgcactccactctctcctctcatcatgaACCTGCTTGTAGTCTGTCTGTGCTATGCAGTTTTGGAGCTCTTGGCAGTCAATTGTCAGGAGGTCATACAGGACCGTATAGTCGGAGGTTACGCTCCAGCCCCCAATTCCATCAAATACATTGTGTCCTTACAGACCACCAAGGGACAGCACTTCTGTGGCGGATCGTTAGTACACAAGTACTGGGTGCTTACAGCCGCTCACTGTAACATAGGGTCAGATCAGATGATGATTGTAGCAGGGGACTACTCTCTGAGTATGTTTGAGGGAACGGAGCAGTATTCCAAACCTCACAGAATTATCCCCCATCCTCTGTACAACAAGACCACCAACAATGCTGACATCATGCTCATCAAGCTGAGGGTTCCCATGGTGATGGGTAGCTATGTGTCCCTGGCACCCCTCCCTCGGCAGGGTACAGGGGTTATGGCGGGGCGGGTGTGTCGTGTGTCGGGGTGGGGGTACACCTCTCTGGGAGGGGGTCAGATCCCCTCCACCCTGCGGACTGTCAAGCTGCCCATCGTGTCATCGGCCAGGTGCAACAGCAGCGAGTCTTTCAATGGGAACATCACCTCCAACATGATCTGTGCCGGATACAATGCTGGGGGCAAGGACGCGTGCAAGGGAGATTCCGGCGGGCCGCTGGTGTGCGAGGGGCGTGTCTACGGTGTGGTCTCATGGGGAAACGGCTGCGGAGATGCCAAGTTTCCGGGCGTTTACACAGCGGTGTCCAAGTTCCGGCGGTGGGTCGACAGAACCATCTACAGCTCCTACACACGCTGTCTGAAGTATTAAAGAGAAGTAgagtggggggggagagagggaagagagagagagagagagaggta
>XM_021567536.2
GAAGGCAAACTCTCTCTGGTGTTACACAGCCCTGTGAAGACAAGCTCTCCCTGGTGTTACACAGCCCTGTGAAGGCAAGCTCTCTCTGGTGTTACACAGCCCTGTGAAGGCAAGCTCTCTCTGGTGTTACACAGCCCTGTGAAGACAAGCTCTCTCTGGTGTTACACAGCCCTGTGAAGGCAAGCTCTCTCTGGTGTTACACAGCCCTGTGAAGACAAGCTCTCTCTGGTGTTACACAGCCCTCATACAATATCATGTAACTGTTTCTGTTTCCATGTTTCAGGATCTGACTCAATAcgaggaaggtgttcttaatatgttgtacattcagtgtatatttATATCACATCCCATATACCATGTAATCCTACACACGTTGTTTCCATGCCTTCCTGCAGGTCAGGAGGTCATACAGGACCGTATAGTCGGAGGTTACGCTCCAGCCCCCAATTCCATCAAATACATTGTGTCCTTACAGACCACCAAGGGACAGCACTTCTGTGGCGGATCGTTAGTACACAAGTACTGGGTGCTTACAGCCGCTCACTGTAACATAGGGTCAGATCAGATGATGATTGTAGCAGGGGACTACTCTCTGAGTATGTTTGAGGGAACGGAGCAGTATTCCAAACCTCACAGAATTATCCCCCATCCTCTGTACAACAAGACCACCAACAATGCTGACATCATGCTCATCAAGCTGAGGGTTCCCATGGTGATGGGTAGCTATGTGTCCCTGGCACCCCTCCCTCGGCAGGGTACAGGGGTTATGGCGGGGCGGGTGTGTCGTGTGTCGGGGTGGGGGTACACCTCTCTGGGAGGGGGTCAGATCCCCTCCACCCTGCGGACTGTCAAGCTGCCCATCGTGTCATCGGCCAGGTGCAACAGCAGCGAGTCTTTCAATGGGAACATCACCTCCAACATGATCTGTGCCGGATACAATGCTGGGGGCAAGGACGCGTGCAAGGGAGATTCCGGCGGGCCGCTGGTGTGCGAGGGGCGTGTCTACGGTGTGGTCTCATGGGGAAACGGCTGCGGAGATGCCAAGTTTCCGGGCGTTTACACAGCGGTGTCCAAGTTCCGGCGGTGGGTCGACAGAACCATCTACAGCTCCTACACACGCTGTCTGAAGTATTAAAGAGAAGTAgagtggggggggagagagggaagagagagagagagagagaggta
>TU1713884
GGCCATGATGACTGAAATCGGAACTTTCAGAAATCTGAGGATCTCTGCTCATCGCTGTCTGATGAGATGTCCTTCTTCctgttatagagagagagaggagagaggatatagaaGTGTTATTCCAGCACTGCATCACACTGCTCAGCCTgcactccactctctcctctcatcatgaACCTGCTTGTAGTCTGTCTGTGCTATGCAGTTTTGGAGCTCTTGGCAGTCAATTGTCAGGAGGTCATACAGGACCGTATAGTCGGAGGTTACGCTCCAGCCCCCAATTCCATCAAATACATTGTGTCCTTACAGACCACCAAGGGACAGCACTTCTGTGGCGGATCGTTAGTACACAAGTACTGGGTGCTTACAGCCGCTCACTGTAACATAGGGTCAGATCAGATGATGATTGTAGCAGGGGACTACTCTCTGAGTATGTTTGAGGGAACGGAGCAGTATTCCAAACCTCACAGAATTATCCCCCATCCTCTGTACAACAAGACCACCAACAATGCTGACATCATGCTCATCAAGCTGAGGGTTCCCATGGTGATGGGTAGCTATGTGTCCCTGGCACCCCTCCCTCGGCAGGGTACAGGG

Function

NR:

description
PREDICTED: trypsin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950823.1 False 980 mRNA 0.54 5 84789174 84793175
XM_021567536.2 False 1191 mRNA 0.53 4 84789929 84793175
TU1713884 True 597 TUCP 0.50 4 84789132 84792500

Neighbor

gene id symbol gene type direction distance location
LOC110494762 p38a coding upstream 23234 84732235 ~ 84765940 (+)
LOC110494759 LOC106593203 coding upstream 70506 84715579 ~ 84718668 (+)
LOC110493280 LOC106566113 coding upstream 104136 84379789 ~ 84685383 (+)
LOC118940500 NA coding upstream 305684 84480749 ~ 84483490 (+)
LOC110493278 LOC106582687 coding upstream 436681 84209507 ~ 84352493 (+)
si:dkey-33m11.6 LOC105030694 coding downstream 4013 84797188 ~ 84798988 (+)
ddx19 LOC106566108 coding downstream 47342 84840517 ~ 84848351 (+)
LOC110494765 LOC106566109 coding downstream 60150 84853325 ~ 84857469 (+)
LOC110494766 LOC106566111 coding downstream 65510 84858685 ~ 84869382 (+)
aurka stk6 coding downstream 78639 84871814 ~ 84879260 (+)
G1499180 NA non-coding upstream 16005 84772884 ~ 84773169 (+)
G1499177 NA non-coding upstream 19195 84769648 ~ 84769979 (+)
G1499169 NA non-coding upstream 50987 84737312 ~ 84738187 (+)
G1499164 NA non-coding upstream 57490 84731309 ~ 84731684 (+)
G1499161 NA non-coding upstream 65369 84723532 ~ 84723805 (+)
G1499197 NA non-coding downstream 34031 84827206 ~ 84836536 (+)
G1499215 NA non-coding downstream 99558 84892733 ~ 84892972 (+)
G1499225 NA non-coding downstream 121767 84914942 ~ 84916728 (+)
G1499238 NA non-coding downstream 164481 84957656 ~ 84958022 (+)
G1499257 NA non-coding downstream 208512 85001687 ~ 85001910 (+)
G1498912 NA other upstream 223567 84516117 ~ 84567678 (+)
G1498913 NA other upstream 291776 84495929 ~ 84497398 (+)
G1498583 NA other upstream 614997 84125837 ~ 84174177 (+)
LOC110494749 LOC106566083 other upstream 907986 83879805 ~ 83890067 (+)
G1499159 NA other downstream 17356 84810531 ~ 84811185 (+)
G1499347 NA other downstream 421618 85214793 ~ 85216073 (+)
LOC110494772 LOC105007909 other downstream 475951 85269122 ~ 85288116 (+)
G1499374 NA other downstream 498610 85291785 ~ 85293121 (+)
G1499923 LOC106566127 other downstream 832268 85625443 ~ 85711859 (+)

Expression


Co-expression Network