ddx19 (LOC106566108)


Basic Information

Item Value
gene id ddx19
gene name LOC106566108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84840517 ~ 84848351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570095.2
CGGGAGGAACTGTTTTGCTCTTGTCTCAATTTCTACACCCGGACATTTTTACGGACGCACTGGTGAACTCCAAGCCTATTTCTTCACGCCATTGTAATATTAGTTTATTTTCAGACTTTGGAAACACTTTGTTGGGGTTCCTAGCTCAGTTATCAGGTTGGTGTTGAAGCTACTGGGAACCAGGTGGTGTGATAAGAGAACGAGACTGACCTAATAACAGCGGACATCATGTCAACCGACTCCTGGGCCCAGGCTGTGGACGAGCAAGAAGCCGCGGCGGAATCGATTGGTAGCCTACAAATCAAAGACAAGCCTGAGGAAAATGGTACTGCCAGCGCTGCATTGGCGACGACAgcgacgacaacaacaacaacaacgacgtCGACAAACACAGCAGCCGCCAGCGCTACAACGCCTGcaaagacaggaggaggagagggagacaaaacAGGGGAGGAGGATGATAAAGATGACAAGGCGGCACAGTCGTTATTGAATAAGTTGATACGCAGTAATCTAGTGAACACAACCAATCAAGTAGAAGTTCTACAGAGGGATCCCAACTCTCCACTTTACTCTGTCAAATCCTTCGAGGAACTACGGCTTAAACCTCAGCTGCTCCAGGGAGTGTACGCCATGGGCTTCAACCGGCCCTCCAAAATCCAAGAGAACGCATTACCCATGATGCTCGCTGAACCCCCACAGAACCTGATAGCCCagtctcagtcagggacagggaAGACTGCTGCCTTTGTCCTGGCCATGCTCAGTCATGTTGATCCCAACAACAAGTTCCCACAGgctctctgtgtgtctcctacCTATGAGCTGGCCCTGCAGACAGGAAAGGTCATTGAGCAGATGGGGAAGCATTACTCAGAGGTCAAACTAGTCTACGCCATCAGAGGAAACAAACTGCAGAGAGGTACCCAGCTCCAGGAGCAGGTTGTGATAGGGACGCCAGGCACCATGCTGGACTGGTGTCTGAAGTTCAAGTTCATCGACCCCAAGAAGATCAAAGTGTTTGTCCTGGACGAAGCTGACGTCATGATCGCTACACAGGGTCATCAGGACCAGAGTATACGCATTCAGAGGATGCTACCCAAACAGTGCCAGATGCTGCTGTTCTCTGCCACCTTTGAGGAGACGGTGTGGAACTTTGCCCAGCGCATCGTCCCAGACCCCAACATCATCAAGCTGAAACGGGAGGAGGAGACGCTGGACACCATCAAGCAGTACTACGTCCTCTGTGACAGCAAAGAGGAGAAGTTCGCGGCCCTCTGCAACATCTACGGAGCCATCACCATCGCTCAGGCCATGATCTTCTGTCATACCAGGAAAACGGCGGGGTGGTTGGCAGGTGAGCTGTCCCGGGAGGGCCACCAGGTGGCGCTGCTCAGTGGGGAGATGCAGGTGGAGCAGAGAGCTGCTGTCATCGACCGCTTCCGAGACGGAAAGGAGAAGGTCCTGGTCACCACCAACGTCTGTGCCAGAGGTATTGACGTGGAGCAGGTTTCCGTGGTGATAAACTTTGACCTGCCAGTGGACAGAGACGGTAACCCGGACAACGAGACGTACCTGCATCGGATTGGCCGCACGGGTCGTTTTGGGAAGCGGGGATTGGCCATCAACATGGTGGACAGCAGGTTCAGCATGAACGTCCTAAACAAGATCCAGGATCACTTCAATAAGAAGATCGAGAAGCTGGACACTGACGATCTGGATGAGATAGAGAAAATCGCCGGCTGAAAAGAGTTCAGAACCACATGACTTCTCTagtccccctcccctcttcctgctTCTCCcagaccccccccacccctcccctcggACTGTTTATTATAGTGTctttcatttttaaaaatgtagtgTTGGAGAGAAGAGCAAAGCCACAAACACAGCTATAATGTTTACATGTGGTTAAATGTCTCTCAGATATGTTTTTATAAGTCTCTGAAACATTCCCGTTTCACTCTTTGTACTTCTTAATGAATAAAGTTTATAATATTAGCTAACATTTTTCATTTGTATATGTGCATTGTAATGCTGTCATGGTGGTAGGCTTAGAGTGCAATGGCTTATGGAAAAACTTTTTAAATTAtgccaaatcaaatgttactACTGCCAGTATCTTCCTTGTTTATGGAATGGAAACAAGCCCTCTTATATAAAGATATTTTTGGTTAACCCAGTCCCTGAATGAAATCCCAAGGAGAGAATCCAGCATAATTAGGAAAATAAACTTCAGATTTTAGTTATCATTTGTGAATGTTTTGCAATGAATACAATAATTCTGATGTAGTACAAAGAGTGAAATAGATTTGTTTTCTGCGGTCTTTGTTTTTAAAAATCATAGTTACTTTGAGATGGTGatggttagaggtcaggggttcaTGCGAACTTGTATCAACCTTTCTGCGTGCCACTATAGTAGTGCAGTGTTCAAGTCACATGACATCCGATTTGTTCGTTTTCGGGATTTTCCCTCAAAATAGCAAAAGGGGATATGGAGAGAACGTAACTTTTGCTACATGTTTTGACCAATAAAGTACAGGTAAATGAAACTATATAAAAATGTGTAATTTAGACATTCAACCATGCATCATCTCaacctcaaatgtttttttttgtgttttattgATTAGAAAACGACACAGACCTCGATACATTTTTTCTTAAATCCTCTCGCAGTGGAACTGGTGTCATTGTTAGGTATGTTATCGTTCATATCTGATTGACCATGTACCTGGAGACTCACCTGTCAAGATGTTAGCTATTGGTCTGAGGTTTATTAACCCACACAGATGTCCCCATCTCAGAATCTGGAGGGAGAAGTTTGACTTTCTGCTCACACCTTTGTGTTTTAAttgaaaactccacccaaaaaatgtatattttgctatttgtttcattagtccattgatAATGTAGTCCCAAAATATGTCAGCAATGAAGTTTTCAAGGTGTACTTAAATAATACAGCCGGTGTGAACCATTTGTCATCATACCGGCTCTATGTATTTGGATATGTATACAgcaacttgattgctgacatgctaAATGTTTTAGGACTACATCAATAATGAAAGAGACACCAAAATGGAGGCTGCTTTAATAGACATTTAGTAAAATGTCATTAACTCATTACGATTGTGTGGAGCT

Function

NR:

description
ATP-dependent RNA helicase DDX19A-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18655 DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570095.2 True 3162 mRNA 0.45 12 84840517 84848351

Neighbor

gene id symbol gene type direction distance location
si:dkey-33m11.6 LOC105030694 coding upstream 41529 84797188 ~ 84798988 (+)
LOC110493283 LOC106566114 coding upstream 47342 84789132 ~ 84793175 (+)
LOC110494762 p38a coding upstream 74577 84732235 ~ 84765940 (+)
LOC110494759 LOC106593203 coding upstream 121849 84715579 ~ 84718668 (+)
LOC110493280 LOC106566113 coding upstream 155479 84379789 ~ 84685383 (+)
LOC110494765 LOC106566109 coding downstream 4974 84853325 ~ 84857469 (+)
LOC110494766 LOC106566111 coding downstream 10334 84858685 ~ 84869382 (+)
aurka stk6 coding downstream 23463 84871814 ~ 84879260 (+)
LOC118940501 NA coding downstream 99994 84948345 ~ 84950742 (+)
LOC118940502 ppp1r16b coding downstream 193822 85042173 ~ 85212327 (+)
G1499197 NA non-coding upstream 3981 84827206 ~ 84836536 (+)
G1499180 NA non-coding upstream 67348 84772884 ~ 84773169 (+)
G1499177 NA non-coding upstream 70538 84769648 ~ 84769979 (+)
G1499169 NA non-coding upstream 102330 84737312 ~ 84738187 (+)
G1499164 NA non-coding upstream 108833 84731309 ~ 84731684 (+)
G1499215 NA non-coding downstream 44382 84892733 ~ 84892972 (+)
G1499225 NA non-coding downstream 66591 84914942 ~ 84916728 (+)
G1499238 NA non-coding downstream 109305 84957656 ~ 84958022 (+)
G1499257 NA non-coding downstream 153336 85001687 ~ 85001910 (+)
G1499258 NA non-coding downstream 153822 85002173 ~ 85002501 (+)
G1499159 NA other upstream 29332 84810531 ~ 84811185 (+)
G1498912 NA other upstream 274910 84516117 ~ 84567678 (+)
G1498913 NA other upstream 343119 84495929 ~ 84497398 (+)
G1499347 NA other downstream 366442 85214793 ~ 85216073 (+)
LOC110494772 LOC105007909 other downstream 420775 85269122 ~ 85288116 (+)
G1499374 NA other downstream 443434 85291785 ~ 85293121 (+)
G1499923 LOC106566127 other downstream 777092 85625443 ~ 85711859 (+)
G1500198 NA other downstream 1418977 86267328 ~ 86268175 (+)

Expression


Co-expression Network