LOC118940505


Basic Information

Item Value
gene id LOC118940505
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85325153 ~ 85326712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037095.1
AATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTGAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAgtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGTGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGACTATTTATACaatgaaacaatgtttttttattcacactgTTTGTAAACAATAACTTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGGTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca
>XR_005037096.1
AAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTGAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAGGGGGACaacgattttttatttttttttttttgtattttattttaggtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGTGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGACTATTTATACaatgaaacaatgtttttttattcacactgTTTGTAAACAATAACTTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGGTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037095.1 False 1425 mRNA 0.37 2 85325153 85326711
XR_005037096.1 True 1472 mRNA 0.37 2 85325153 85326712
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Neighbor

gene id symbol gene type direction distance location
LOC110487407 NA coding downstream 6300 85316345 ~ 85318853 (-)
LOC118940503 NA coding downstream 120478 85190797 ~ 85204675 (-)
LOC110494769 LOC106566115 coding downstream 330150 84950520 ~ 84995003 (-)
slc32a1 LOC106566112 coding downstream 437662 84881988 ~ 84887491 (-)
LOC110494760 ca119 coding downstream 594424 84724945 ~ 84730729 (-)
LOC110494775 LOC106566119 coding upstream 17809 85344521 ~ 85425394 (-)
LOC110494776 LOC106566127 coding upstream 383489 85710201 ~ 85713130 (-)
LOC110493286 LOC106566136 coding upstream 791863 86118575 ~ 86183605 (-)
LOC110494779 ddit3 coding upstream 909842 86236554 ~ 86242991 (-)
dctn2 LOC106566142 coding upstream 922520 86249232 ~ 86276059 (-)
G1499684 NA non-coding downstream 37036 85251788 ~ 85288117 (-)
G1499711 NA non-coding downstream 42390 85281851 ~ 85282763 (-)
G1499696 NA non-coding downstream 70401 85253935 ~ 85254752 (-)
G1499667 LOC106566122 non-coding downstream 83356 85239880 ~ 85241797 (-)
G1499673 NA non-coding downstream 95448 85228554 ~ 85229705 (-)
G1499721 NA non-coding upstream 16856 85343568 ~ 85376275 (-)
G1499737 NA non-coding upstream 69206 85395918 ~ 85397768 (-)
G1499743 NA non-coding upstream 76310 85403022 ~ 85403400 (-)
G1499781 NA non-coding upstream 148528 85475240 ~ 85475490 (-)
G1499822 NA non-coding upstream 178124 85504836 ~ 85505044 (-)
G1499671 NA other downstream 102034 85221125 ~ 85223119 (-)
G1498522 NA other downstream 1267761 84051010 ~ 84057392 (-)
G1498442 NA other downstream 1342259 83982341 ~ 83982894 (-)
G1498077 NA other downstream 1719400 83605243 ~ 83605753 (-)
G1500834 LOC106566150 other upstream 1122967 86449679 ~ 86450734 (-)
LOC110493290 map3k12 other upstream 1471353 86798065 ~ 86880836 (-)
G1501650 LOC106566166 other upstream 1807346 87134058 ~ 87166800 (-)
G1501745 NA other upstream 2068068 87394780 ~ 87395835 (-)

Expression

LOC118940505 Expression in all Baseline Samples

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LOC118940505 Expression in each Bioproject

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LOC118940505 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network