LOC110494776 (LOC106566127)


Basic Information

Item Value
gene id LOC110494776
gene name LOC106566127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 85710201 ~ 85713130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570106.2
acagtgcAGTGGCTGTAATGTATTTGATGTTCTCATTGGTGCCCCCCCCTCTAACGTGTCACAATTTCTGGTAGATTAACCCAGATATGGGGAGCATCATCAGGTGTTGAAGTACCACTCACGCTCTCTTAACCCTTGTCTTCGAGGCATCCACCTGCAGGAACAAGCACCTGCTGACTGAAAAAAAAAGTTCAGGAACTTGTGTAACCAACTCAGGAACAACACATATTTCAAcatgttttcttccatttgatcGATTATTTTACCAACGCCTTGTGCCTTTAAAATACATATAGTTCGAGACTCCACCAACATGCTATACTCTTCATCTTCAACATTGCCAATGTATTTATTGATGACGTCTCTGCTGGTGATGGGCCTGGAGGCTGCGGCCACTGCAGGGACCACTCCGGGCTGCGCGTCCTGCGGCATGCCGCTAATGGAGAAGGATGCGGAGCAGAGGCTCCTGGTTGAAATCGCAAAGCAGCAGATCTTGAACAAGCTGCACCTGAAAGAGAGACCAAATATCACATCGACTGTGTCCCGCGCTGCACTTCTCACCGCGCTCCGCAAACTGCACGCGGGACGTGTCAGACCGGACGGAACCATTGAACTTGAAAACAAGATCAAGGAAACCAAAGATCCGGGATATGAAATAGTGAGCTTCGCAGAAATGGATGAGATGAACACTACTACTGGCGCCCAGCCAGGCCTCACCTTCCAGTTTCAGCAGGAGAGAGACCACAGCATCCAGGTGCTTCAGTCTGCCCTGTGGCTGTATGTCCACTCCTCCGACACCCCAAACCGGGGTCCCCGCCCCATCGCCACAGCCCACATCTATCTGTCTAGCCCTGGGGAGAGCAGATCCAACCACACCCTCCTCTTGGAGAAGATCTTGGATGTGCAGAAGAGCAACTGGCATACCTTCCCCATCACCCACACCTTACAGGCCTTCATGGACGGGGGCAAGCGGCAGCTACAGCTTGAGGTCACCTGCAAGGAGGCCGGGTTTGAGCCGGGCCAAGGCCAGAACCTGTGTGAGTTGGGTAAGACCATGGACATGGCTCATCAGCCATTTGTGGTGGCCCAGGTGCGGCTCCGTGACAACTTCAAACACATCCTCCAGAGGAGGTCCCTGCGATGCGGGGACAACGTCAGCGTTTGCTGCAAGAAGGACTTCTACGTCAAGTTCAAGGATATCCAGTGGCAGGACTGGATCATAGCTCCAGAAGGGTACCATATGAATCACTGTATGGGTCAGTGTCCCCAGGCCCTGGCCGGGTCTCCAGGCATTGCGTCTTCTTTCCACGCCACAGTGTTCAGTCAGCTTAAAGCCAACGGCATCAATTCAGCGGTGTCTTCTTGCTGCGTGCCCATCCAGCGTAGGCCTCTGTCTATGGTCTACTTCAACTCACAGCACAGCATTGTCAAGACCGACGTCCCTGATATGATCGTAGAGTCCTGCGGCTGCACGTAAACACACAAAAGAGAAAGACCAGACATTCAGCTTATGATGCTTTTAGTCTGAGAAGACTAGATTGAatttgttacacacacacacacacacataataatttAAGGTATTCTGTCTCTATCAATTTGATAGAGGGACTTTGCACAGAAAGTGAGAATGAGACTTCAATGTCTTGTAACTGGCAGACCTGGTTCAAATACTATATAGGCTATTTCAATTACTTTCAAAGACATTTACAAGTAAGtatttcaatatatatataaaataacatctttttttttttcaagacaTGTAGTtgaatattgtaatatatttggaaatacacttggaaagtatttggaaatacacttggaaagtatttggaaatacacttggaaagtatttgaaaatacacttggaaagtatttggaaatacacttggaaagtatttggaaatacacttggaaagtattgGAAAATACTTACATACACTGACTCAAATACACTCCCAGGCatttgaaaatagtatttgaaataaaTATTTAGAAATACTTTCAAATAGAAGTCTATTTATGGGAAAAtatttgaaaatactttcaagtaaAACTCATTCTGTATTCGAAACGTTCTTGAAATCCACAGAGCTACATGCTACACTCTTAGATAAAGGGTTCCAAAAAGGTTCTTCATCTGTCCtgataggagaacccttttcggttccaCATAGAGCCCTttttaggttccaggtagaaccatctGTGGAAACGGTTCCACATAGAGCCCTttttaggttccaggtagaaccatctGTGGAAACGGTTCCACATAGAGCCCTttttaggttccaggtagaaccatctgtggaaacggttccacatagaacc

Function

NR:

description
inhibin beta C chain

GO: NA

KEGG:

id description
K04669 TGFBRX; TGF-beta receptor, other

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570106.2 True 2337 mRNA 0.46 2 85710201 85713130

Neighbor

gene id symbol gene type direction distance location
LOC110494775 LOC106566119 coding downstream 284807 85344521 ~ 85425394 (-)
shmt2 shmt2 coding downstream 367535 85300306 ~ 85342666 (-)
LOC118940505 NA coding downstream 383489 85325153 ~ 85326712 (-)
LOC110487407 NA coding downstream 391348 85316345 ~ 85318853 (-)
LOC118940503 NA coding downstream 505526 85190797 ~ 85204675 (-)
LOC110493286 LOC106566136 coding upstream 405445 86118575 ~ 86183605 (-)
LOC110494779 ddit3 coding upstream 523424 86236554 ~ 86242991 (-)
dctn2 LOC106566142 coding upstream 536102 86249232 ~ 86276059 (-)
igsf8 igsf8 coding upstream 827669 86540799 ~ 86555989 (-)
sp7 sp7 coding upstream 892810 86605940 ~ 86610581 (-)
G1500517 NA non-coding downstream 27097 85682675 ~ 85683104 (-)
G1500513 NA non-coding downstream 27879 85677329 ~ 85682322 (-)
G1499852 NA non-coding downstream 171539 85538462 ~ 85538662 (-)
G1499822 NA non-coding downstream 205157 85504836 ~ 85505044 (-)
G1499781 NA non-coding downstream 234711 85475240 ~ 85475490 (-)
G1500533 NA non-coding upstream 8481 85721611 ~ 85767996 (-)
G1500557 NA non-coding upstream 63150 85776280 ~ 85778950 (-)
G1500565 NA non-coding upstream 82692 85795822 ~ 85827130 (-)
G1500587 NA non-coding upstream 119099 85832229 ~ 85834039 (-)
G1500624 NA non-coding upstream 211888 85925018 ~ 85925783 (-)
G1499684 NA other downstream 422084 85251788 ~ 85288117 (-)
G1499671 NA other downstream 487082 85221125 ~ 85223119 (-)
G1498522 NA other downstream 1652809 84051010 ~ 84057392 (-)
G1498442 NA other downstream 1727307 83982341 ~ 83982894 (-)
G1498077 NA other downstream 2104448 83605243 ~ 83605753 (-)
G1500834 LOC106566150 other upstream 736549 86449679 ~ 86450734 (-)
LOC110493290 map3k12 other upstream 1084935 86798065 ~ 86880836 (-)
G1501650 LOC106566166 other upstream 1420928 87134058 ~ 87166800 (-)
G1501745 NA other upstream 1681650 87394780 ~ 87395835 (-)

Expression


Co-expression Network