LOC118940507 (kif5a)


Basic Information

Item Value
gene id LOC118940507
gene name kif5a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86276390 ~ 86452362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950862.1
GAATGTGGGCCCACGATTGACTGGTCAAACCATATTCGCATGATGGGGCTATTATACAATAACAACAATTGTCCATAGGCAACTGCTCCATCTTCAGCGCATCAGTGGTGCTGATGAGAGGGATGAGAATAGGCTACCACTTTAATAACGTTGCCTGGATCAGTGCAGGCCACGCCCCGTGCTTGTTAAAAGACCAGAGAGCTGCCAGTGAAGCAAAGCGCTCGGCAAGCTCATGCTTCAAAAATCTCTCCTCCTGCATCTCTCGCTACAACAGCGGACCGACCGTCTGGAGCCGGATCCGCTCGGGAATACTCTCACATTTCAATTCTAAAGAACTGCATGGACAAATTAGCAGAAACGTTATAGTGACATATATGTGTTTTTCTGGTCTATTTGAAGTAAGCAAACTCTCCAACATTTACATAACctaatttacatttttattttgatcGAAACTGATCTTATTTCAAGCACAAAAGCTTGAAATTATCCTTCTTGCAAACGCTCAACTTGCCCATCTAAAAAAAAGAGTGTCTGCATTGATATGATAGATAAGACTAAATAGTGTAAGGGAACAAGTAAGTTATAGGTTTCCAAAAAAAATCCCCTTTGCCTTTTTTGAGGCACATCCGATTTCTTTCTCACAATGGCCGATGTTAGCGCAGAATGTAACATCAAGGTGCTATGTCGCTTCCGTCCTCTAAATCAGTCCGAAATAATCCGTGGAGACAAATTCATCCCCTCATTCCAAGCTGATGACACCGTCAGCATAGCGGGGAAGTCCTATGTGTTTGACCGGGTGTTCCccaccaacacaacacaggaaCAGGTGTACAACACCTGCGCCAAGCAGATAGTCAAAGaTGTTCTGGGGGGATACAATGGCACCATATTCGCCTACGGACAGACCTCCTCTGGAAAGACTCACACTATGGAGGGCAAGCTTCATGACCCACATGGGATGGGGATCATCCCCAGAATTGCAGAGGACATCTTCAATCACATATTCGCCATGGATGAAAACCTGGAGTTCCACATTAAGGTGTCCTATTTTGAAATTTACATGGACAAAATACGGGACCTTCTGGATGtGACGAAGACTAACCTGGCAGTGCACGAGGACAAGCACAGGGTTCCCTATGTGAAGGGCTGCACTGAGCGTTTTGTCTCCTGCCCAGAGGAGGTGATGGATGTTATTGACGAGGGCAAAGCCAACCGCCATGTAGCTGTCACCAatATGAATGAGCACAGCTCCAGGAGTCACAGTATCTTCCTGATCAACATTAAACAGGAACACGTGGAGACAGAGCAGAAACTGTGTGGGAAGCTCTACCTAGTGGATCTGGCTGGGAGTGAGAAGGTCAGTAAGACAGGAGCAGAGGGAGCTGTGTTGGAAGAAGCTAAGAACATTAACAAGTCACTGTCTTCCCTGGGCAACGTCATCTCTGCTCTGGCCGAAGGAAATAAGACCCATGTCCCGTACCGTGACAGTAAGATGACCCGTATCCTGCAGGACTCTCTAGGGGGAAACTGTAGAACCACCATGTTCATCTGCTGCTCTCCATCCAGCTACAACGACCAGGAGACCAAGTCCACACTCATGTTCGGACAacgAGCTAAGACCATCAGGAACAAGGCCTCGGTCAACCTGGAGCTGACAGCAGAACAGTGGAAGAAGAAGTacgagaaggagaaggagaagaacaaGGTGATGAAGGAGACGGTCCAGAGACTGGAGGCTGAGCTGAACCAATGGAGAAACGGGGAGAACTCCCACGGAACAGGCACGTcaagtaACGGTTCCTCTTCCAGTCTGAGTCGACTCCCCAGAGAAGACAGTTCCTCTTCCATTGTGATCAGGATttcagaggaggagagacagaagtaCGAGGAGGAAATACGTAAACTCTACAAACAGCTGGATGACAAGGACGATGAGATCAACCAGCAGAGTCAGCTGGTAGAGAAGCTGAAGGAACAGATGCTGGATCAGGAAGAGcTCCTTGCCTCGTCCCGTGGGGACAGTGAGAAGGTGTCTGTGGACCTTGGCAGGCTGCAGATGGAGAGTGAGGTTGCCAAGGCGGAGGTCAGGGAGGTTCTGCAGGCCTTGGAGGAGCTGGCTGTTAACTACGATCAGAAGAGCCAGGAGGTGGAGGACAAGAGTCTGCAGAACAAACTACTGGCTGAGGAACTGGCCAAGAAAATGGCCCACCTGATGCGTATCGAGGCGGACTTGTGTCGTCTACAGGAAGTGAGTGTTCATCAGAGGAAACGCATTGCTGAGGTTCTCAACGGCCTGATGCGGGACCTTTCTGAGTTCAGCGCTATCGTGGGCAACAAGGATATCAAACTGcCGATGGAGATAACGGGGGCGATCGAGGAGGAGTTTACAGTAGCTCGTCTCTACATCAGTAAAATCAAGTCAGAGGTCAAGTCCATGGTGAAACGCTGTCGTCAGCTAGAGAACCTTCAGATGGAGTTTCATAGGAAGATGGAGGAGACTGGAAGAGAGCTGTCCTCTTGCCAACTACTCATCTCACAGcatgaGGTGAAGATccgctccctgacagagtacatTCAGAACGTAGAGCAGAAGAAAAGACAGCTGGAGGAGAACGTTGACTCTCTGAGTGAAGAACTGGACAAACTGCAGACTCAAGaGAGAATGTCAGCAGGGACAAAGGGAGAGAATCAGACAGACGTTGAGGAGTCTGCTGATGTCAAGATGGAGGCTCACCGTGAGACCCACCACAAGCAGCTGGGACGTCTCCGAGACGACATCAACGAGAAACAGAAGATCATTGACGACCTCACTGATCGTAACTGTCGTCTTCATCTGGAGTTGGAGCATCTGAGGAGCGACTTTGACCGTCTCATGAGGCAGGAGCACCAGAAGAGTCTGCAACTGGAGGAGCTGAAATTTCTTTATGAACGCCACGAACAGTCTAAGCAGGACCTTAAAGGGCTGGAGGAGACTGTCGCTCGTGAACTCCAGACTCTCCACAACCTGCGGAAGCTTTTTGTTCAAGACCTCACGATTCGAGTCAAAAGACATTCAGAGATGGAGCGCAATGAAAGCGGGGGATCTAGCCACCAAAAGCAGAAGATTTCCTTCCTTGAGAACAACCTGGACCAGCTTACAAAGGTTCACAAACAGTTGGTACGTGACAACGCAGACCTGCGTTGTGAGCTTCCGAAGCTTGAGAAGCGTCTTCGATCTACGGCTGAGAGAGTGCGGGCGTTGGAGGGTGCACTGAAGGAGGCTAAGGAGGGGGCTATGAAGGACCGGAGACGCTATCAACAGGAAGTAGAGAGGATCAAAGACGCCATGAGGGTCAAGAACCCCCTACGCAGGCCGCACGCCGCTCAGATAGCCAAGCCGGTCCGTCCGGGCCAGTTCCCGCTCTGCTCTCCCACCAACCCCTGGGTCCGTATTACTGAACGGCAACACTCCATCCATTTTAGCAATGCCATGTTCCAGATGCCCAGTCTGACCCCCAGCCAGATAGCCAGTCATCATGCTGCATCCCCAGCAACAGCCCCTTACTTTAAACCCTCCCAGAGCAAGGACCAGTCCAACAATCACAACTCCACCGAGTCCAACATGCCCCAGACCAACAAGCTGCCAGATGAGCCAGTCAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGTCAACAGCCCCACAGAGGTCAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGTCAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAATAGCCCCATAGAGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAATAGCCCCATAGAGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAATAGCCCCATAGAGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAATAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGAGGACAACAGCCCCACAGAGGACAACAGCCCCACAGTGGACAATAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCTCCATAGTGGACAATAGCCCCACAGTGGACAATAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAACAGCCCCACAGTGGACAATACTATAGTGCAGAACACAACAGAGAAGGACACTACATTGAAGAACACTACAGAGAAGGACACTACATTGAAGAACACTACAGAGAAGGACACTACATTGAAGAACACTACAGAGAAGGACACTACATTGAAGAACTCTACAGGGACGCTGGATGTGGACACCGTCAACGGGAACGCCACAGATATCAATTACAACAGCTTGTCTCTGAGTGTCCACTCTGCTGCTGTGTCCAGGAGTGATGTGCAGCACTGCGACAACCAGAACCAGGACAGCCCAGCCAAGCTGCACCACGTCATCCAACCAGAACAGGCTACCAGCTAGTGACCCAGCTCCTCacgcgtcCGGTTCTGCCAAGACCGCCCTCATAAATCTGCATGCTGCTGATCAGTGACCTTCtgatctccctctcctccccccctttcCCAGTAatacggtctctctccctctccagccccCTTTCCCAGTAagaccgtctctctccctctcctccccccctt

Function

symbol description
kif5a Predicted to enable microtubule binding activity and plus-end-directed microtubule motor activity. Predicted to be involved in several processes, including axo-dendritic transport; axon guidance; and synaptic vesicle transport. Located in membrane. Implicated in amyotrophic lateral sclerosis; hereditary spastic paraplegia 10; multiple sclerosis; prostate cancer; and rheumatoid arthritis. Biomarker of asbestos-related lung carcinoma.

NR:

description
PREDICTED: kinesin heavy chain isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950862.1 True 5004 mRNA 0.52 29 86276390 86452362

Neighbor

gene id symbol gene type direction distance location
mars1 mars coding upstream 38036 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 170453 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 174079 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 266949 85849052 ~ 86009441 (+)
LOC110493284 LOC106566126 coding upstream 454652 85730542 ~ 85824609 (+)
soat2 LOC106566146 coding downstream 14764 86467126 ~ 86511354 (+)
tarbp2 tarbp2 coding downstream 204316 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 247176 86699538 ~ 86711214 (+)
LOC110494798 amhr2 coding downstream 262739 86715101 ~ 86734187 (+)
prr13 NA coding downstream 326682 86779044 ~ 86781359 (+)
G1500192 NA non-coding upstream 26267 86249126 ~ 86250123 (+)
G1500187 NA non-coding upstream 42282 86233653 ~ 86234108 (+)
G1500186 NA non-coding upstream 52575 86222168 ~ 86223815 (+)
G1500185 NA non-coding upstream 56192 86219358 ~ 86220198 (+)
G1500184 NA non-coding upstream 65486 86210413 ~ 86210904 (+)
G1500176 NA non-coding downstream 738 86453100 ~ 86456213 (+)
G1500172 NA non-coding downstream 6015 86458377 ~ 86459865 (+)
G1500168 NA non-coding downstream 7792 86460154 ~ 86464207 (+)
G1500167 NA non-coding downstream 12041 86464403 ~ 86465937 (+)
G1500267 NA non-coding downstream 14239 86466601 ~ 86466938 (+)
G1500198 NA other upstream 8215 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 564531 85625443 ~ 85711859 (+)
G1499374 NA other upstream 983269 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 988274 85269122 ~ 85288116 (+)
G1499347 NA other upstream 1060317 85214793 ~ 85216073 (+)
G1500170 LOC106566147 other downstream 68468 86520830 ~ 86527030 (+)
G1501148 NA other downstream 716177 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 972148 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1637295 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2317508 88769870 ~ 88800640 (+)

Expression


Co-expression Network