soat2 (LOC106566146)


Basic Information

Item Value
gene id soat2
gene name LOC106566146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86467126 ~ 86511354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950863.1
AGCTGATGTAAGAGAGGGACACagttcacacacactcacacacaccagtgAGACACTCAGCGACACTGCTTCTCCCTGAGGATCACTCCCTGGAGCCCGTCTGTGTGAGGGGAGACCTGAGCCTGAGACCAGAACACTGTTCCTCCAGCAGGGCAATACCTATACAGAACCCATCCCTGCGTCTTGACCCGGAGGTGCCATGgcaacagacagcaacagacTTGGAGACACCACGGCCACAGAGACGGCCACCAGATTGGTGCACCGAAACATTAACAACCCCAACGCTGTGGAGACCGACAGCTCTATCTCCAGTGGAGAGGTCACTAACCATGTGGAGAAGCACGCTGAGGATCTGATACAGTGGAAGAGGCATGTGGAGCGAGTAAAGAGTAAGGTGCTGGACCAGATTCAGGGGCATCTTAGCGACCTGCTAGACAAGGCCCTGACTGAATCTGTCCAGACATTTACGCAGAATGAGAACCATGGCAACAACCACGTCAACCATGTCAACAACAACCATGTCACCAGAGACGGGACAGTCACCACCACTAACAACAACGAAAACTCACACAGAACCCACACGGAAAAGGATGGAAAAGTATTTATGGACAGACGCTCCATTCTAGAtgatctgtttgAGATCAACCACATTCGGACCATCTACCACATGTTCATCTCAGTgctcttcctcttcatcatcaGTACACTGGCTGTGGACTACATCGACcagggcagACTGGTGCTGGAGTTTGACCTGTTGTCCTATGCCTTTGGGAAGCTACATATAGTAGGTTTGGCCTGGCTGTTGATGTTCAGCTACACGTTGGCCGTGCCCTACTATGCCCTGGCTCTCTGGGGGACTCTCTACCATCGCAGCCCGGTACAGGGGGTACTGTCGGTGGGTGCTGGGCTGGTGCTCTCCGCCTTGCAGGCCGCTGTACTGGGGGTTCTCCCTATATACGTGGTCTTTCACTACCAGCTGCCTCCAGCCTCACGATTCATCATCATATTGGAACAGATCCGTTTCCTGATGAAAAGCTACTCTTTCATCCGAGAGAATGTCCCAGTCATCCTTAAACACAAGACAAAGGAAGGAGAGGGTCCCAGGTTCCCAACGTTCTCGAGTTACCTCTATTTCCTCTTTGCTCCCACCCTCATCTACAGAGAGTCTTACCCCAGAAACCCACACATTAGATGGAGCTATGTTGGCGTAACGTTTGCTAAGATTCTGGGATGTCTTTTCTATGGTTACTTTATCCTGGTGAGACTGTGCATACCTGTCTTCATGAATGACAGCAACAAGCCTTTCAGCACCAGAACCCTGGTCCTGGCCTTGTTCCATGCTACACTTCCAGgtatgttactgctactgctggcGTTCTTTGCCTTCCTCCACTGCTGGCTAAACGCCTTCGCTGAGATGCTACGCTTTGCAGACAGGATGTTCTATAAGGACTGGTGGAACTCGACATCGTTTGCCAATTACTACAGGACCTGGAACGTGGTGGTTCATGACTGGCTTTACTACTATGGATACAGAGATTTTCTCTGGCTGTCCAGGAGGAAGTTCCGTACGGCGGCCATGTTGTCGGTGTTCGTCGTGTCGGCCTTGGTCCATGAATATGTCTTCACCCTGGGTTTCGGATTCTTCTACCCAGTAATGTTCTGTCTCTTCGCTTTCTTTGGAgtggcgTTCAACTTCACTCTGAACGACAACAGGAAGAGTCCTGTGTGGAACATCATGATGTGGACCTGTCTGTTCATTGGACAAGGGGTCATGGTGTGTCTGTACTGCCAGGAGTGGTATGCCCAGATACACTGTCCTCGCACTGGGGCTAGCTTCTGGGAGTTGGTGACACCCCGATCCTGGTCCTGCAGCAACTAGGTCTGAAACTACAGCACTGAGTTGCCTGCCTCATCCAGGGGTTGAGACATGGGCTGAGTCTCAATAGTAAACCCAGCTGTTCCACCCTCCACATTGAACTTGGTGTCAGGGGACAAACTCCGTTTGTAAACCTTGCCTTTGATCCTTGGCTAAAACAGGCATCCCTTTGAGAGTGTTATTCATTGATAGAATCCTGTCAGGAAACCAGATCTAACGTGGAATATAAACAGAGGTAGTAGTTGAAAACATGCTTACTGTTTGGATGGAACATGTACGGATGGATTGTGTATCTATGGATGTGTTTAACTGTACTAGCTGTACTAGCGGGGACAAAAAGGTCCTCACAAGTATAGAAAACAAACAAATGTTTTGatcaactggggacattttgttagtctcCACACGGTCAACTGCTATTTCTAggggttttagggttaaggttagaattagtgttagggttagaattagtttcaattcagggttagttttagggttaaggttaaggttagggtaagggtaag

Function

NR:

description
PREDICTED: sterol O-acyltransferase 2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950863.1 True 2409 mRNA 0.49 15 86467126 86511354

Neighbor

gene id symbol gene type direction distance location
LOC118940507 kif5a coding upstream 14764 86276390 ~ 86452362 (+)
mars1 mars coding upstream 228772 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 361189 86102351 ~ 86105937 (+)
LOC110494777 LOC106566131 coding upstream 364815 86092647 ~ 86102311 (+)
LOC110493285 LOC106566129 coding upstream 457685 85849052 ~ 86009441 (+)
tarbp2 tarbp2 coding downstream 145324 86656678 ~ 86673359 (+)
sp1 sp1 coding downstream 188184 86699538 ~ 86711214 (+)
LOC110494798 amhr2 coding downstream 203747 86715101 ~ 86734187 (+)
prr13 NA coding downstream 267690 86779044 ~ 86781359 (+)
LOC110494796 LOC106582661 coding downstream 270217 86781571 ~ 86797881 (+)
G1500267 NA non-coding upstream 188 86466601 ~ 86466938 (+)
G1500167 NA non-coding upstream 1189 86464403 ~ 86465937 (+)
G1500168 NA non-coding upstream 2919 86460154 ~ 86464207 (+)
G1500172 NA non-coding upstream 7261 86458377 ~ 86459865 (+)
G1500176 NA non-coding upstream 10913 86453100 ~ 86456213 (+)
G1500171 LOC106566147 non-coding downstream 3412 86514766 ~ 86519779 (+)
G1500169 NA non-coding downstream 19912 86531266 ~ 86535084 (+)
G1500180 NA non-coding downstream 24364 86535718 ~ 86536031 (+)
G1500175 NA non-coding downstream 25231 86536585 ~ 86537127 (+)
G1500174 NA non-coding downstream 26189 86537543 ~ 86538185 (+)
G1500239 NA other upstream 83581 86382298 ~ 86383545 (+)
G1500198 NA other upstream 198951 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 755267 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1174005 85291785 ~ 85293121 (+)
LOC110494772 LOC105007909 other upstream 1179010 85269122 ~ 85288116 (+)
G1500170 LOC106566147 other downstream 9476 86520830 ~ 86527030 (+)
G1501148 NA other downstream 657185 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 913156 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1578303 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2258516 88769870 ~ 88800640 (+)

Expression


Co-expression Network