igsf8 (igsf8)


Basic Information

Item Value
gene id igsf8
gene name igsf8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86540799 ~ 86555989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950865.1
CCCCACCCTCCCTTGCCTCTCCCTCCCTTGCCCCCTGTGATACCAACAGCGATCGCATTCGGACAGCATGTTGGATGGAAAAGGCTGCTCAGGCAAATATTTAGCTAGCGAAAAAATGAATTGGTCATTACGTGTGCGAAATATTATTTAGGCTATTCCGGTTTACAAAGACGGCATTCTAATGCAAGAGAAAGTATTGAATGTGTAATAGCTACAGTGGATGAATATTATTAGCTTGAatggttggctagctagctaaacatcgGGACTACTAAATCAACATTGCATTGTAGCCGATCGGATATTTCAACGTTCCATAATGTAATGTCAAGTGGATTGCAACGTTACATTGATGTTGATGTGTCATTGATTGAACTGAACGAGAGAGGGAATGTATCCGGATACAACCACAGAGACGAGTAGAGGAATTTGAATCGCCATAATCCATCTGCAGCAGGGGCATCGGGACGGATGATGATGATGGCTTCGTGGCGATGGACAGCAGCTCTCATCTGTTTACAGTGGGTGTTCCAGTACACCCTGTGTCGCGAGGTAACCCTTCCCTCCGGACCCCTATACCGCGTGGCAGggttccccctctccatcccttgtGCTGTATCAGGCTACGAGGGTTCCCGAACGCAGGACTTTGAGTGGTTCCTGTACAGGGAGGACTCCCAGGGGAGACAGATGGGGGTGATCTCCACCAGGGACCCTGGGTTTCCCTATGCACCCTTCCAGGCGCGGGTGAGGTCCGGGGAGGTGAGGGTGGAGAGGGACTCGGGGGACAAGGCCAGGCTGGTGTTCCAGAGGCTACGAGCAGATGACCAGGGACGATACGAGTGTTACACACCCAGCACAGACTCCAAATACCAGGGCAACTACAGTGCCTCGGTCGCTGTCAAAGtgattcCAGACACTCTCCTGATTAGCTACTCCCGGTCTCTAACTGGCCAACCCGTGCCAGAGGGGGCGGAGATAACTCTCACCTGCTCCGCCGCCGTCCAATCAAAACAGCACACCCACCTGTCCATCACGTTCGGCGTGCGTGCCGGTGGTAGCGGGTTGGGGTCAGGGACACCGAGAGAAATCATAGCTATCGATAAAGAATTGAGCGTGACTCCTGGCCGAGGGGACTCCTACCAGAAGAGAtatgatgatggagagataacGCTGGTGAAGAagagtggagatggagggagagatgtcTACGTGATGAGGATGAGCGCCGTGGCCCCGGACGACTCAGGGGCCTACTTCTGTGAGGCGTCGCAGTGGATCCTGGACCCTGATGGAGCGTGGCAGAAGATCGCTCAGAGGACCTTGGAGATTGGCAACCTCACGGTTCAACCACTTGCTGACTCCCTGTCTGTTACGTCCACTCCGCGAGGTGAGGTAACTCTCCAGTTAGGCTCCCCTCTCACTCTGACCTGCGAGGTGTCTGGTTTGGCCCCTGGGGGCCGCTCGGGCCTGCTGGTTCAGTGGATGAAGAGGGGCACCGTGAGCAGCGAGGACAGGGCATTGacgggtggaggggtggagGTGGAGGTGGCTCGGTATGGTCCAGACGGGGTGGTGAGCTGGGGGGATGACTCCAGCCGGGGGGGTCGGGGTGGAGGGGGTtccatggagaaggaggtggagggacgGTACTCTCTCAGGTTGTTCTCTGCCCACCCAGCTGACACGGGGGTGTACCGCTGTGCTGTGAGTGTCTACGCTGGGAGGCTTAACCCGGGACCCTCCAGTGCTGCTACCCTCACACAGAGGTCAGAGGGGGTCACCGTCAACCTCAAGACTAAAGAGGTCAAGGTGTCAGCAGTAGCCAACCTTCCCCGTGGCCCCCTCTTGAAGAGAGGTGATACCGTCACCCTGCTCTGCAACGTATCCGTGGTAACCACCGGCCCTGCACAGATGGCGGTCCAATGGCTGCAGAGGGCGGTCCTCCCGGCCCAGGAGGGTGGGGCTACAGCAGGGGGCGTGGTCATAGAGAAGGGTGGGGACAAGCCGTCagtagaggagaaggggagggtgtTAGCCTCTCTTACCTATGAGGGCCTGTCCAGGCCAAATAAGAACCACAGCTCTGAGGTCAGTATGGACCGGGTGTCTCCAGGCACCTACAGGCTGAGGATCTTCTCTgcccaggaccaggaccagggccTGTTTGTCTGCCAGGCTGAGGTGTGGGGACAAGACCCCCGTGGAGGATGGTACAACACCGGGGCCAAGGCCCAGTCGGAGGGTGTCAGGGTCTACCTGTACGCCAGAGcaGCCGACCTGCTCCTCATCCCCTTGGTTGTGGGCATGTCCTCTGCCTTGTTTGTGGGCGTGGTCATCATCGCCACGGTAACCTGTTGCTTCATGAATCGATTGGCTAGGCAGCGCTCCCCGAAATAGGAAGTAGGAAGTCACGACAACGTATAAGTTCACTGAAGGGTGATCGACGAAGAGGTTAAAATAAAATGaccacaaaacaa

Function

symbol description
igsf8 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF8 (immunoglobulin superfamily member 8).

NR:

description
PREDICTED: immunoglobulin superfamily member 8

GO: NA

KEGG:

id description
K06730 IGSF8, CD316; immunoglobulin superfamily, member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950865.1 True 2480 mRNA 0.56 9 86540799 86555989

Neighbor

gene id symbol gene type direction distance location
dctn2 LOC106566142 coding downstream 264740 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 297808 86236554 ~ 86242991 (-)
LOC110493286 LOC106566136 coding downstream 357194 86118575 ~ 86183605 (-)
LOC110494776 LOC106566127 coding downstream 827669 85710201 ~ 85713130 (-)
LOC110494775 LOC106566119 coding downstream 1115405 85344521 ~ 85425394 (-)
sp7 sp7 coding upstream 49951 86605940 ~ 86610581 (-)
tespa1 LOC106566176 coding upstream 117463 86673452 ~ 86697487 (-)
LOC110495202 LOC106566175 coding upstream 155464 86711453 ~ 86714926 (-)
LOC110494797 LOC106596199 coding upstream 184559 86740548 ~ 86774465 (-)
LOC110493290 map3k12 coding upstream 244964 86798065 ~ 86880836 (-)
G1500840 NA non-coding downstream 3683 86536234 ~ 86537116 (-)
G1500861 NA non-coding downstream 31721 86504834 ~ 86509078 (-)
G1500835 NA non-coding downstream 89175 86451086 ~ 86451624 (-)
G1500833 LOC106566150 non-coding downstream 91314 86449241 ~ 86449485 (-)
G1500832 NA non-coding downstream 94588 86445833 ~ 86446211 (-)
G1500879 NA non-coding upstream 19593 86575582 ~ 86579680 (-)
G1500889 NA non-coding upstream 57691 86613680 ~ 86615356 (-)
G1500900 NA non-coding upstream 80030 86636019 ~ 86728444 (-)
G1500913 NA non-coding upstream 115558 86671547 ~ 86673353 (-)
G1500918 NA non-coding upstream 119643 86675632 ~ 86676110 (-)
G1500834 LOC106566150 other downstream 90065 86449679 ~ 86450734 (-)
G1499684 NA other downstream 1252682 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1317680 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2483407 84051010 ~ 84057392 (-)
G1501650 LOC106566166 other upstream 578069 87134058 ~ 87166800 (-)
G1501745 NA other upstream 838791 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1606289 88162116 ~ 88175346 (-)
G1502489 NA other upstream 1802163 88358152 ~ 88425505 (-)

Expression


Co-expression Network