sp7 (sp7)


Basic Information

Item Value
gene id sp7
gene name sp7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86605940 ~ 86610581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570138.2
ATTAAGGGGCGGGATCTCTGCCTCTCCAAATACGTCTGTGCGCTCATGCCGGAGTTCTCTCAAACTGTCCCGGGACTGCGAGCAGAGAAGAGAACCGACTTAACTATCTACTCTTGGGATTTTGTTTCCCAGGGATGGCCGCATCTATTCTGGAGGAGGAAGCTCGCTATGGTTCCAGTCCTCTTGCTATGCTAACCGCTACCTGCAACAAGTTTGGCAGCACCAGCCCGGTGAGGGACTCAGCCACCCCTGGCAAGGCCGGCCCCGGCAGCACCGCTACAGTCAAGAAGCAGTACACCATGAGCTCAGAGCTCCAGGGACAGAGAaacagcagaggaggaggagagagcatgGAGAACTCCTACACTGGTTCCTTCAGCTCAGCGGGTGGGTTACTCACACCCACTGGCAGCCCACCTCCATCCTCTGGGGGGTATACGTCCGAGTACAACCCCTTCTCCCACTCCTTCCAGACCTCCATGTCCCAGGGCCAGGACCAGTCCCTGCTGGTGTCCAAGGCCCACGCCACGGCCGACTGCCTGACCAGCGTCTATACCTCCCTGGACATGACTCACCCCTACGGCTCCTGGTACAAGGCAGGCATCCACCCCGGAATCACCGCCGCCCCCTCCAACACCACGTCCTCCTGGTGGGACGTCCACCCAAATACCAACTGGCTGAGTGCCGCCCAGCCCCAGTCCGACGGCCTCCAGGGCTCCCTCCAACCCgtccctccccaagcctccctcagcccccagctgccCAGCTACACCTCTGACTTCACCTCTCTGAACCCAGCTCAGTACCCCTCGGTGGGCCTGGGGTCCACATCACACCTCCTTCAGTCCTCCCAGCACATGCTGCCTCAGGACATGTACAAGCCCAAGCCGGTGTCTGGCGGGGGGCTGATGGAGAATCAGATGGGCCTGAAGCCTGCTGGTGGATCACGGGGTTACGGTGGGGGAACCACCACTGGCCGGTCCAACTGTGACTGTCCCAACTGCCAGGAGCTGGAGCGGCTTGGAGCCTCGGCTGCATCCCTGAGGAAGAAGCCCGTTCATAGCTGCCACATCCCGGGCTGTGGGAAGGTCTATGGTAAAGCCTCGCATCTCAAGGCCCACCTCCGCTGGCACACTGGGGAGAGACCTTTCGTCTGCAACTGGCTGTTCTGTGGGAAACGTTTCACACGTTCCGACGAGCTGGAGAGGCATGTCCGCACGCACACCCGGGAGAAGAAGTTCACCTGCCTGCTGTGTAACAAGAGATTCACCCGCAGCGACCACCTCAGCAAGCACCAGAAGACCCACGCAGAGTCTGCCCTGCAGCAGGCCAAGACCGGGGAGGGAGAGGCCCAGGACCCCAGGAACAACGAGGAGACGGCAGACCCCAATAACCTCAACACGGCCGTGCAGAATAACAACGTCCCTAGTGAGACGACTACCAACGGAGAGGAGAAGACTGGCTCAGCCAACGGGGTAGAGACCAGCAGTGGACTGCTGGAGATTTAACTTCAGCGTATGTGTTGTGGTCTTATAGAGATGTTTTGTTCAGTTAGTGTGGCACCGTTGTGGTGCAAAGTTTACTATATATCTAAAAACAAACAGCATTATTTAGTATTTGTACATGCTGCCCACGCGTTTGACATTAATTGTCAAAGGATGCATTTGACATAGTTTGTAATGACTTTCAAGATAACTGGCCAGGCTGGTCGGGAAATACCCATTCTGtggacttcacacacacacacacacacatcacacacatcacacctcaCACACAATTTCTTAATTTTCAGTAAAACAAACCACTAAATTCAATCTGTAAgatcagagggggaaaaaacaagaaGAAAATGTGTGTATGTAGAATGAGGGACGTAGTGGATCATTGCTTTGCTATGGTACATTGTTGTCTCAGTAAGAACCCGTCTCTGATATCGGGTACGTCTTGTTTTGGGATTTGAGTCTGTGCGTTTCCTATCATGTCTTATTTAATTTTAGATTTACACAAATAATCTAATTTATGTTTTTAAATTATAAGCATTAAAGATTATCGTGCATTTTTCAGGCAGTGCATCGTTGGATAATAATGGCAAGATAAAGCCATTGATAATTTAGTAAAttaagattattattatttttcttcttTTATTTATTGATTATAACCACGGTGATGTTGTTGGTGCTATCGTGTTGGAAGATGTATTTATAGATCTTGAAATTAAGTGTTTCTGCTAACTATTTTCTACGTAACTATTCTATTGTGAAGTCTGCACACCTGCCACGTTGACAGTGATGAAGGCGTTCTCCTTTAGGTACTTTATTGCTGTAATGTCAGGTGTGTTATTTTTCTGCCCTTTTTCTAATTTGTTGATAAACTTTTTTTTTCCAACTGTAATGAAAATGACACTTACAACAATAATATTAATTAAGACACACCGATTAAATTAAGGTAGAAATCAGATGGTATATGTTCACGTCTTCAAAGAAAGTCCAAAGTTTATCACAGCAATGCATGATGGATATTTAGGATAATAAACTCCTGATATTTTGTGATTGAACTTCATGAAGAATATTAGTTGGAACTTTTGCAGGATGTGGAATGAGCTAAATAAGGAAACCGTAATTCAGCATGAGCTTGGTATAGGATTATGTCTTCAGTGTCGTGACATGAAATGGTgcttcagtaaaaaaaaaaaaaagcta

Function

symbol description
sp7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ morphogenesis; osteoblast differentiation; and regulation of osteoblast proliferation. Is expressed in several structures, including ectoderm; fin; head; optic primordium; and optic vesicle. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 12. Orthologous to human SP7 (Sp7 transcription factor).

NR:

description
transcription factor Sp7 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09197 SP7; transcription factor Sp7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570138.2 True 2705 mRNA 0.49 2 86605940 86610581

Neighbor

gene id symbol gene type direction distance location
igsf8 igsf8 coding downstream 49951 86540799 ~ 86555989 (-)
dctn2 LOC106566142 coding downstream 329881 86249232 ~ 86276059 (-)
LOC110494779 ddit3 coding downstream 362949 86236554 ~ 86242991 (-)
LOC110493286 LOC106566136 coding downstream 422335 86118575 ~ 86183605 (-)
LOC110494776 LOC106566127 coding downstream 892810 85710201 ~ 85713130 (-)
tespa1 LOC106566176 coding upstream 62871 86673452 ~ 86697487 (-)
LOC110495202 LOC106566175 coding upstream 100872 86711453 ~ 86714926 (-)
LOC110494797 LOC106596199 coding upstream 129967 86740548 ~ 86774465 (-)
LOC110493290 map3k12 coding upstream 190372 86798065 ~ 86880836 (-)
col2a1b LOC106566180 coding upstream 339629 86950210 ~ 87034105 (-)
G1500879 NA non-coding downstream 26260 86575582 ~ 86579680 (-)
G1500866 NA non-coding downstream 61953 86543287 ~ 86543987 (-)
G1500840 NA non-coding downstream 68824 86536234 ~ 86537116 (-)
G1500861 NA non-coding downstream 96862 86504834 ~ 86509078 (-)
G1500835 NA non-coding downstream 154316 86451086 ~ 86451624 (-)
G1500889 NA non-coding upstream 3099 86613680 ~ 86615356 (-)
G1500900 NA non-coding upstream 25438 86636019 ~ 86728444 (-)
G1500913 NA non-coding upstream 60966 86671547 ~ 86673353 (-)
G1500918 NA non-coding upstream 65051 86675632 ~ 86676110 (-)
G1500930 NA non-coding upstream 83295 86693876 ~ 86694307 (-)
G1500834 LOC106566150 other downstream 155206 86449679 ~ 86450734 (-)
G1499684 NA other downstream 1317823 85251788 ~ 85288117 (-)
G1499671 NA other downstream 1382821 85221125 ~ 85223119 (-)
G1498522 NA other downstream 2548548 84051010 ~ 84057392 (-)
G1501650 LOC106566166 other upstream 523477 87134058 ~ 87166800 (-)
G1501745 NA other upstream 784199 87394780 ~ 87395835 (-)
dnsl3 dnsl3 other upstream 1551697 88162116 ~ 88175346 (-)
G1502489 NA other upstream 1747571 88358152 ~ 88425505 (-)

Expression


Co-expression Network