sp1 (sp1)


Basic Information

Item Value
gene id sp1
gene name sp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86699538 ~ 86711214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570134.2
cctttctccttcgTAGCAGAATCAGCATGTTTGGTTGAAGAGCAAAAAGTTGATGTCAACCTGAAAGAAGCCCGAGAAACTCCTCCCGTCTCGAAATTATGAGTGACCAACAGGATGAAATGGCCGCGATGGTGGAAAGCGGTGGAGGCTTCCTTCAAAAGCGAAACACAAATACCGGACAAgaCTCCCAGCAGCCCTCTCCTTTAGCTCTGTTGGCAGCGACCTGTAGTAGAATCGACACCCCAGGCGAGAGTGACTCCGGCTCCGAACAACAGTTAGACCTAAGCCAAGCCCAGCTGACCCAGACAGCCAATGGGAGCTGGCAGATCATCCCTGTCAGTCTCGGTAGCTCCAGTGGTTCCAACACCATCACCACCGACTCCACTGGCATGGTCATGACCGCGGGCGACTCGGGGAAGAACAGGGGGCAACAGGTGTTGACGTCGGTCTCCAGTGGGCACCAGGGACAGCAGCAGTATGTGCTGTCCTCAGCTCCTTCTCTACAGGGCCAGCAGGTCCTCACCATGTCTGGGGGCCAGGTTGTGTCCATGCCCAACATCCATTACCAGGTGATCCCTCAGTTCCAGACGGTGGATGGCCAGCATCTACAGTTTGCCCAGGCAGGGGTGCAGCAGGACCCTAATGCAGCTGGGGCAGGACAGTTCCAGCTAGTCTCCTCGCCTAACGGGGGTCAGCAGCTGGTTAGAACAGGGAGTGGAGGAAATATCCTAACCATGCCCGCCGGGGTCCTACAGCAAGCCATCCCCCTACAGAACCTAGGTCTGGGTAACAGCGTCCTGCAGAACAACCAGGGCCAGTTCCAGTTGGCTAATATGCCTGGTCTCCTAAATGGCAATATCACCCTCCTTCCGGTCAGTGCAGCTAGTGGGTCTGAAGGGGACGGAGGCTCTAACCAGCAGCTGATGCAGCAGGTAGTGTCAACCTCTGGCACGTACTACACCaactcaaccaccaccaccactcagacAGGCACCTCGTATGGAGGCATGACACAGCAGACTCAGAGCACCAACGGCTTCCAGAACTCTGGCGGCGGGATCCCCATCCAGCCAGATAACAGAGATCAGCCGCAGCAGATCCTCATTCAACCCCAGCAGCTCATCCAAGGAGGGACCTCTCTGCAGACAATCTCAGCTGGGGGACAGGTGTTCGCGACACCAACACTTACCCAGGATGCCCTGCAGAACCTGCAAATTCAGACCCTCCCCAACACCTCTCCCATCCTGCTGAGGACCGTCGGGCTCAACGGACAGGTGAGCTGGCAGACCCTCCAGCTGCAGAGCCCAGCGGGGACCCAGATCACCCTGGCCCCCATGCAGAGTCTCTCTCAGCTGGGCCAGGCCCAGGGAGGTACCATGCAACTCCCTGGCCTGCACACCATCAACCTCAACACACTGCAGAACTCTGGTTTACAGATGCACCAGCTACAAGGAGTCCCCATCACCATCTCTAACACATCTGGAGACCAGGGTTTGCAGGCAGGGGGAGACAGTCTGGATGACGGCACAGTCATGGAGGAGGGAGACACGTCCCCTCAGCCTCAGAACCGCCGGACACGAAGGGAAGCCTGCACCTGTCCCTTCTGCAAGGACGGAGAGGCGAGAGATCCCAATAAGAAGAAGCAGCATATCTGTCACATGCCAGGTTGTGGGAAGGTGTACGGTAAGACATCTCACCTGAGAGCTCACCTTCGCTGGCACACTGGAGAACGACCCTTCGTCTGCGGCTGGTCCTTCTGTGGGAAGAAATTCACTCGCTCGGACGAACTGCAACGCCacaagaggacacacacagGTGAGAAGAAGTTCACGTGTACGGAGTGTCCAAAACGATTCATGCGCAGCGACCACCTCTCCAAACACCTCAAGACCCACCTCAACAAGAAAGGAACCACCGGTGGCGCTGTGACCTCCGATAACTCCGCCCCTCAGTCGGGTGGAGGCGGAGCCACGGATGCCGGGGGTGTGGTCAATGACCAACACGCCCTCATTGCCATGGAGACACTGTCGCCCGAGGGCATCGCCCGATTGGCCAGCAGCGGCATCAACGTGATGCAGGTGGCTGACCTGCACTCCATCAACAGTAATGGATATTGATTACTGATTGGATGTGGGGATCAGGACGGTAGTGGAGCAACGGACATTGATCTATAAGGGCTATATGTGTCTAGATTATATACAGTAAAACTAAGGGCTAATAataggaagggaggggagagctCTGTTTAGATATTTTTGAGAGCTGAGACAGGATCCAGGGAGTCCCTTCAGCTACACTGCTATGGCGTATTTCCATGACCTTACCCATTTCATTGGCTGTGAGTCGGGTGGAGAGCAGTCTAGATGTTAGTTACCTAGATCTGATCGATAATGGAAGGGAATGAATGGTACTACTACAGTGGTTGTCCTAGTAACACATTCACGAAGGCGGCTTCTCTGGAACACAATATAAATCCATCACTTCCAATCTCTATTTGTACATAACGCAGAAACGCACTACTGCCACCCCCTCTCTCAGGTCTCTTCTTGTCCAACCCCCCTCTGTCtgggtatagtacagtatacaccagggaTAACTTCAGTACTCCACTGTACTAGCTGGTTGAGTGGGTTGGGCCTTCGCCTGGTCTCTCACACCTTCTCTTGTCTAGCCCGGTATCACCGTTGTTTCTCATTGAAGGCCAGTGTGGATGGGGGAGGGGCTCGTCGTTATTTGGTCACTATTTGGACTTCTGGGGCCTGTTCAGGAGGATGTAACGTTACACAAcgttcagatggtaacatatggTGTAGAAGGGAAACGgctcttgtttttttttctatttGTATCTGCAGCGTTTGGCATGTTTCATGTCCCTGaatccagcccagacccaggaGCATTAATCAGCaggggggcacacacacacacaatcacctacatggggtcctggtcaaaagtaacgtACTAAACAGGGACACAAATCTAAAATTGTCATGAAATATCTCCTTGTTTTTTGCCTTTTTTTATATAGGTACACATTCAAGCCATCATGCTTTGATGCGTTTATCATAGCAAAAAAGAAGAGAATTTGGGATAAGTCTTTGTATGtacatatgttttttttctctctctcgtgtaAAGATACGGAAATTCTTAGCATAGGAAGGATCAACTGAACTTTATATGGTTGCAAGAGATTGCCTTTCTGTTGTGAGTCTCTCATACACAATCAATCTTAAACTTCTATTCTAAACTTTTTATATAAATGTAGATTTTGTTTAAGCTATTTCCGACAAAAAGTGTTGTGTCTATAGAATGAACTATGTATGTATTCAATACGGTCCAGTCCCAGTACATGATTTACTTCTCTGGTATATTTGTCAATTTGCTTCATACTCCCAAGTTCTTTCTCTGATGCATTTGGATATCAAATTCTTCCTTGACTACTTTaaccctgtttttttttttttttttaagtcttatttccaaataatgcaaaaaaataatTTCAGCTAAAACCAAAAAAATCCATATTCTGTTTTAAGAGAACTGTGGAATGGAAGGTTGTCATCAGTTCTAGGCAGTCGATATAACCTGGCTCTGGACCTGGTTGTATTACAGCTTCGGTTTCTGTATTAGGGTTGCTAAAGACAGGTAACATTCCTAGGTTAATGAAATCTTGTTAGGTAGTCCTGCTTATGCAATCCCTTTTCCAGGAATTTAACTTTTCTGGAAAACCACATTTATTACAACCCTACTTCCGTAACAGCATTGGCCTGCATGTTTTGGAAGAAAGTACACGTGATTTATTATTACGTAAGAACAGCATCATTAGGTTGTCTCAAACAGAAAGCCAGGGTCGATCAAACGTTAAGATTGACCTCGTCACTATTTTAATCCAGTCAGTTTCAGTAATGGTGTCAGTCACAGATGTATTGCAGAAGACTGACTAGCTGGGGTTCTAAATGTgcaacaaatggcaccctattccctatgtagtactatgggccctggtcaatagtagtgcactaaagggagtagggtgccattttggatacaCATTTGAAGAGGGTTAAGTACTTAACTCCCTGTTGACTTGATGTCCACTTCGAGCTCGATCAACTACAAGTTGTGAGGAAATGTATTTGAATGCATCGTTTCAGTATTTGATTTGTACTCCTATCCTTGCAATTTAGTTTTCAGACAAGTGCCCttaatgtttttatttcatttaaaaagGGAGGTTTTTTTTGAATGTTATTACTACAAATGCCAACAGCTGGATTAAAAATTACAAATACAAAA
>XM_021570135.2
AATTATGAGTGGTAGGtgaacttttttttcttctctcttctccccccctttcAGAAGTAGCTACAGTAGTTTTGTAAAAGTCTACGAAGCTAACTAATAGACCAACAGGATGAAATGGCCGCGATGGTGGAAAGCGGTGGAGGCTTCCTTCAAAAGCGAAACACAAATACCGGACAAgaCTCCCAGCAGCCCTCTCCTTTAGCTCTGTTGGCAGCGACCTGTAGTAGAATCGACACCCCAGGCGAGAGTGACTCCGGCTCCGAACAACAGTTAGACCTAAGCCAAGCCCAGCTGACCCAGACAGCCAATGGGAGCTGGCAGATCATCCCTGTCAGTCTCGGTAGCTCCAGTGGTTCCAACACCATCACCACCGACTCCACTGGCATGGTCATGACCGCGGGCGACTCGGGGAAGAACAGGGGGCAACAGGTGTTGACGTCGGTCTCCAGTGGGCACCAGGGACAGCAGCAGTATGTGCTGTCCTCAGCTCCTTCTCTACAGGGCCAGCAGGTCCTCACCATGTCTGGGGGCCAGGTTGTGTCCATGCCCAACATCCATTACCAGGTGATCCCTCAGTTCCAGACGGTGGATGGCCAGCATCTACAGTTTGCCCAGGCAGGGGTGCAGCAGGACCCTAATGCAGCTGGGGCAGGACAGTTCCAGCTAGTCTCCTCGCCTAACGGGGGTCAGCAGCTGGTTAGAACAGGGAGTGGAGGAAATATCCTAACCATGCCCGCCGGGGTCCTACAGCAAGCCATCCCCCTACAGAACCTAGGTCTGGGTAACAGCGTCCTGCAGAACAACCAGGGCCAGTTCCAGTTGGCTAATATGCCTGGTCTCCTAAATGGCAATATCACCCTCCTTCCGGTCAGTGCAGCTAGTGGGTCTGAAGGGGACGGAGGCTCTAACCAGCAGCTGATGCAGCAGGTAGTGTCAACCTCTGGCACGTACTACACCaactcaaccaccaccaccactcagacAGGCACCTCGTATGGAGGCATGACACAGCAGACTCAGAGCACCAACGGCTTCCAGAACTCTGGCGGCGGGATCCCCATCCAGCCAGATAACAGAGATCAGCCGCAGCAGATCCTCATTCAACCCCAGCAGCTCATCCAAGGAGGGACCTCTCTGCAGACAATCTCAGCTGGGGGACAGGTGTTCGCGACACCAACACTTACCCAGGATGCCCTGCAGAACCTGCAAATTCAGACCCTCCCCAACACCTCTCCCATCCTGCTGAGGACCGTCGGGCTCAACGGACAGGTGAGCTGGCAGACCCTCCAGCTGCAGAGCCCAGCGGGGACCCAGATCACCCTGGCCCCCATGCAGAGTCTCTCTCAGCTGGGCCAGGCCCAGGGAGGTACCATGCAACTCCCTGGCCTGCACACCATCAACCTCAACACACTGCAGAACTCTGGTTTACAGATGCACCAGCTACAAGGAGTCCCCATCACCATCTCTAACACATCTGGAGACCAGGGTTTGCAGGCAGGGGGAGACAGTCTGGATGACGGCACAGTCATGGAGGAGGGAGACACGTCCCCTCAGCCTCAGAACCGCCGGACACGAAGGGAAGCCTGCACCTGTCCCTTCTGCAAGGACGGAGAGGCGAGAGATCCCAATAAGAAGAAGCAGCATATCTGTCACATGCCAGGTTGTGGGAAGGTGTACGGTAAGACATCTCACCTGAGAGCTCACCTTCGCTGGCACACTGGAGAACGACCCTTCGTCTGCGGCTGGTCCTTCTGTGGGAAGAAATTCACTCGCTCGGACGAACTGCAACGCCacaagaggacacacacagGTGAGAAGAAGTTCACGTGTACGGAGTGTCCAAAACGATTCATGCGCAGCGACCACCTCTCCAAACACCTCAAGACCCACCTCAACAAGAAAGGAACCACCGGTGGCGCTGTGACCTCCGATAACTCCGCCCCTCAGTCGGGTGGAGGCGGAGCCACGGATGCCGGGGGTGTGGTCAATGACCAACACGCCCTCATTGCCATGGAGACACTGTCGCCCGAGGGCATCGCCCGATTGGCCAGCAGCGGCATCAACGTGATGCAGGTGGCTGACCTGCACTCCATCAACAGTAATGGATATTGATTACTGATTGGATGTGGGGATCAGGACGGTAGTGGAGCAACGGACATTGATCTATAAGGGCTATATGTGTCTAGATTATATACAGTAAAACTAAGGGCTAATAataggaagggaggggagagctCTGTTTAGATATTTTTGAGAGCTGAGACAGGATCCAGGGAGTCCCTTCAGCTACACTGCTATGGCGTATTTCCATGACCTTACCCATTTCATTGGCTGTGAGTCGGGTGGAGAGCAGTCTAGATGTTAGTTACCTAGATCTGATCGATAATGGAAGGGAATGAATGGTACTACTACAGTGGTTGTCCTAGTAACACATTCACGAAGGCGGCTTCTCTGGAACACAATATAAATCCATCACTTCCAATCTCTATTTGTACATAACGCAGAAACGCACTACTGCCACCCCCTCTCTCAGGTCTCTTCTTGTCCAACCCCCCTCTGTCtgggtatagtacagtatacaccagggaTAACTTCAGTACTCCACTGTACTAGCTGGTTGAGTGGGTTGGGCCTTCGCCTGGTCTCTCACACCTTCTCTTGTCTAGCCCGGTATCACCGTTGTTTCTCATTGAAGGCCAGTGTGGATGGGGGAGGGGCTCGTCGTTATTTGGTCACTATTTGGACTTCTGGGGCCTGTTCAGGAGGATGTAACGTTACACAAcgttcagatggtaacatatggTGTAGAAGGGAAACGgctcttgtttttttttctatttGTATCTGCAGCGTTTGGCATGTTTCATGTCCCTGaatccagcccagacccaggaGCATTAATCAGCaggggggcacacacacacacaatcacctacatggggtcctggtcaaaagtaacgtACTAAACAGGGACACAAATCTAAAATTGTCATGAAATATCTCCTTGTTTTTTGCCTTTTTTTATATAGGTACACATTCAAGCCATCATGCTTTGATGCGTTTATCATAGCAAAAAAGAAGAGAATTTGGGATAAGTCTTTGTATGtacatatgttttttttctctctctcgtgtaAAGATACGGAAATTCTTAGCATAGGAAGGATCAACTGAACTTTATATGGTTGCAAGAGATTGCCTTTCTGTTGTGAGTCTCTCATACACAATCAATCTTAAACTTCTATTCTAAACTTTTTATATAAATGTAGATTTTGTTTAAGCTATTTCCGACAAAAAGTGTTGTGTCTATAGAATGAACTATGTATGTATTCAATACGGTCCAGTCCCAGTACATGATTTACTTCTCTGGTATATTTGTCAATTTGCTTCATACTCCCAAGTTCTTTCTCTGATGCATTTGGATATCAAATTCTTCCTTGACTACTTTaaccctgtttttttttttttttttaagtcttatttccaaataatgcaaaaaaataatTTCAGCTAAAACCAAAAAAATCCATATTCTGTTTTAAGAGAACTGTGGAATGGAAGGTTGTCATCAGTTCTAGGCAGTCGATATAACCTGGCTCTGGACCTGGTTGTATTACAGCTTCGGTTTCTGTATTAGGGTTGCTAAAGACAGGTAACATTCCTAGGTTAATGAAATCTTGTTAGGTAGTCCTGCTTATGCAATCCCTTTTCCAGGAATTTAACTTTTCTGGAAAACCACATTTATTACAACCCTACTTCCGTAACAGCATTGGCCTGCATGTTTTGGAAGAAAGTACACGTGATTTATTATTACGTAAGAACAGCATCATTAGGTTGTCTCAAACAGAAAGCCAGGGTCGATCAAACGTTAAGATTGACCTCGTCACTATTTTAATCCAGTCAGTTTCAGTAATGGTGTCAGTCACAGATGTATTGCAGAAGACTGACTAGCTGGGGTTCTAAATGTgcaacaaatggcaccctattccctatgtagtactatgggccctggtcaatagtagtgcactaaagggagtagggtgccattttggatacaCATTTGAAGAGGGTTAAGTACTTAACTCCCTGTTGACTTGATGTCCACTTCGAGCTCGATCAACTACAAGTTGTGAGGAAATGTATTTGAATGCATCGTTTCAGTATTTGATTTGTACTCCTATCCTTGCAATTTAGTTTTCAGACAAGTGCCCttaatgtttttatttcatttaaaaagGGAGGTTTTTTTTGAATGTTATTACTACAAATGCCAACAGCTGGATTAAAAATTACAAATACAAAA

Function

symbol description
sp1 Enables DNA-binding transcription factor activity and double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain; liver; spinal cord; and testis. Orthologous to human SP1 (Sp1 transcription factor).

NR:

description
transcription factor Sp1 isoform X1

GO: NA

KEGG:

id description
K04684 SP1; transcription factor Sp1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570134.2 False 4308 mRNA 0.48 8 86699538 86711214
XM_021570135.2 True 4303 mRNA 0.48 8 86699632 86711214

Neighbor

gene id symbol gene type direction distance location
tarbp2 tarbp2 coding upstream 26179 86656678 ~ 86673359 (+)
soat2 LOC106566146 coding upstream 188184 86467126 ~ 86511354 (+)
LOC118940507 kif5a coding upstream 247176 86276390 ~ 86452362 (+)
mars1 mars coding upstream 461184 86183733 ~ 86238354 (+)
LOC118936559 LOC106566131 coding upstream 593601 86102351 ~ 86105937 (+)
LOC110494798 amhr2 coding downstream 3887 86715101 ~ 86734187 (+)
prr13 NA coding downstream 67830 86779044 ~ 86781359 (+)
LOC110494796 LOC106582661 coding downstream 70357 86781571 ~ 86797881 (+)
myg1 cssa12h12orf10 coding downstream 172101 86883315 ~ 86909700 (+)
LOC110494793 LOC106566167 coding downstream 214181 86925395 ~ 86944826 (+)
G1500346 NA non-coding upstream 10245 86688977 ~ 86689293 (+)
G1500337 NA non-coding upstream 39127 86659356 ~ 86660411 (+)
G1500287 NA non-coding upstream 118888 86580388 ~ 86580650 (+)
G1500284 NA non-coding upstream 130286 86569036 ~ 86569252 (+)
G1500283 NA non-coding upstream 131285 86567353 ~ 86568253 (+)
G1500355 NA non-coding downstream 9023 86720237 ~ 86720856 (+)
G1500359 NA non-coding downstream 26948 86738162 ~ 86740217 (+)
G1500364 NA non-coding downstream 37921 86749135 ~ 86750243 (+)
G1500313 NA non-coding downstream 47957 86759171 ~ 86760479 (+)
G1500373 NA non-coding downstream 77133 86788347 ~ 86788807 (+)
G1500170 LOC106566147 other upstream 172508 86520830 ~ 86527030 (+)
G1500239 NA other upstream 315993 86382298 ~ 86383545 (+)
G1500198 NA other upstream 431363 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 987679 85625443 ~ 85711859 (+)
G1499374 NA other upstream 1406417 85291785 ~ 85293121 (+)
G1501148 NA other downstream 457325 87168539 ~ 87169007 (+)
LOC110494789 bloc1s1 other downstream 713296 87415720 ~ 87486890 (+)
LOC110494816 LOC106566192 other downstream 1378443 88089634 ~ 88143474 (+)
G1502352 NA other downstream 2058656 88769870 ~ 88800640 (+)
G1502370 NA other downstream 2095764 88806978 ~ 88808969 (+)

Expression


Co-expression Network