LOC110494790 (ppp1r1a)


Basic Information

Item Value
gene id LOC110494790
gene name ppp1r1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87260493 ~ 87296463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950903.1
gaaggagggagagagacagagagagacagagagagagagagagagagagagagagcacagtatGCCCttgcctccctccttcctctctattATAAAACTGAAAGGAGACTGAAAAGAGGAACAGTAGAGCTGGAAAACAAAGAAAGACACTGAAAGAGTACGGCATagaaaggacagggagagagagagacggggtaaAATAACGGGACGTGcgtgaagagagagaaagcgagacagacagagctcAGTGCAGCAGTATCACCACTTCCACCACCTCTCTTCCATAGCTACCtttacctcctccctccctccctccctcctcctttctgtaTTCCATCTCCCctggttctccctccttctctctgtactcCATCTcccctggttctccctcctcctctctctactccatcTCCCCTGGTTCTCCCTACTCCTTTCTGTACTCTGTGTCCCCTGgttctcctcttctctgtctacTACTATTACCGACAGCAGGACCATGGATACAGGAAGCCCCAGGAAGATCCAGTTCACCATGCCTCTCCTGGACTCACACCTGGACCCAGAGGCTgctgaacagatcagaaGACGTCGGCCCACACCTGCTACTCTGGTAGCATCCAGTGACCAGTCTTCTCCAGAAATAGATGAAGACCGTCTTCCAAACCAGTTATACAAGGCAGCCTTGATGAACTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGagttacagttcatggtCGACCACCACCTAtatcaacagcagcagcagcagggtgGAGGTGATGAGTGTTCCTCAGAGAGCTGTCTGTCCGACAGACCCAGCCCGGACGCTCTGCCCaacggggaggaggaggaggagctggagcTACCGGAGGACGAGGAGGCCTGGGGAACCGAGGACAAGGTCATTGCAGAGGCCTTCGAGAAGCCGTGCTGCCAGATGGAGGCAGAGTTTTCGCGGAACAGTCTATCAGAAGCTACAGGGGGACATGAGTGCCCCCTCTCCGAGGAGGAAGTGGGATGCTCCGCCGTTCTCATGGCAGCAACATCATCGTCACAACAACAACACGCACTAGCAGCTGCAGACACAACAGCTGCGTCCACAGCGAGTCCACTGGCAGAGAAGAACACGAAGACACCCAACCAGGCCAAACAAGACAAGTAGAACCGTAGAACCGTCTCCACAGCAACCTGGCATGCATCctaagtggcaccctattccctagctATGAAGTGTACTCCTTTTGatcagagtagtgcactatacagggaatagggtgccacttggaaCGCAAACCTGACGTTCAATAAGTaacttagacagacagacagaagacagacaATGACTGACCATCCTTTTGACAGACAGACTTACGGCTGAATTCAATCTGTATCACAGAGGTATCGCAGAAGATTCGCATTAAAATGCAAATTCATTAAaatgctaatttattaaaatgcaaattcattaaaatgcaaattcaTTCATCAAATTCATTCAAATACTACTTAAGagttttttgggtatctgtactgtactttactatatatatttttgacaacttttacttttactccgctacattcctaaagaaaatcatgtattttttactccatacattttccctgacacctagaAGTACTCGTTACGTTTTGaattgcttagcaggacaggaaaatggtccgatttacacacttatcaagaaaacatccctggtcatccctactgcctctgatctggcggactcactaaacacaaatgctttgtt
>XM_036950904.1
gaaggagggagagagacagagagagacagagagagagagagagagagagagagagcacagtatGCCCttgcctccctccttcctctctattATAAAACTGAAAGGAGACTGAAAAGAGGAACAGTAGAGCTGGAAAACAAAGAAAGACACTGAAAGAGTACGGCATagaaaggacagggagagagagagacggggtaaAATAACGGGACGTGcgtgaagagagagaaagcgagacagacagagctcAGTGCAGCAGTATCACCACTTCCACCACCTCTCTTCCATAGCTACCtttacctcctccctccctccctccctcctcctttctgtaTTCCATCTCCCctggttctccctccttctctctgtactcCATCTcccctggttctccctcctcctctctctactccatcTCCCCTGGTTCTCCCTACTCCTTTCTGTACTCTGTGTCCCCTGgttctcctcttctctgtctacTACTATTACCGACAGCAGGACCATGGATACAGGAAGCCCCAGGAAGATCCAGTTCACCATGCCTCTCCTGGACTCACACCTGGACCCAGAGGCTgctgaacagatcagaaGACGTCGGCCCACACCTGCTACTCTGGTAGCATCCAGTGACCAGTCTTCTCCAGAAATAGATGAAGACCGTCTTCCAAACCAGTTATACAAGGCAGCCTTGATGAACTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGGTAAGATCTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGagttacagttcatggtCGACCACCACCTAtatcaacagcagcagcagcagggtgGAGGTGATGAGTGTTCCTCAGAGAGCTGTCTGTCCGACAGACCCAGCCCGGACGCTCTGCCCaacggggaggaggaggaggagctggagcTACCGGAGGACGAGGAGGCCTGGGGAACCGAGGACAAGGTCATTGCAGAGGCCTTCGAGAAGCCGTGCTGCCAGATGGAGGAGTTTTCGCGGAACAGTCTATCAGAAGCTACAGGGGGACATGAGTGCCCCCTCTCCGAGGAGGAAGTGGGATGCTCCGCCGTTCTCATGGCAGCAACATCATCGTCACAACAACAACACGCACTAGCAGCTGCAGACACAACAGCTGCGTCCACAGCGAGTCCACTGGCAGAGAAGAACACGAAGACACCCAACCAGGCCAAACAAGACAAGTAGAACCGTAGAACCGTCTCCACAGCAACCTGGCATGCATCctaagtggcaccctattccctagctATGAAGTGTACTCCTTTTGatcagagtagtgcactatacagggaatagggtgccacttggaaCGCAAACCTGACGTTCAATAAGTaacttagacagacagacagaagacagacaATGACTGACCATCCTTTTGACAGACAGACTTACGGCTGAATTCAATCTGTATCACAGAGGTATCGCAGAAGATTCGCATTAAAATGCAAATTCATTAAaatgctaatttattaaaatgcaaattcattaaaatgcaaattcaTTCATCAAATTCATTCAAATACTACTTAAGagttttttgggtatctgtactgtactttactatatatatttttgacaacttttacttttactccgctacattcctaaagaaaatcatgtattttttactccatacattttccctgacacctagaAGTACTCGTTACGTTTTGaattgcttagcaggacaggaaaatggtccgatttacacacttatcaagaaaacatccctggtcatccctactgcctctgatctggcggactcactaaacacaaatgctttgt
>XM_036950905.1
gaaggagggagagagacagagagagacagagagagagagagagagagagagagagcacagtatGCCCttgcctccctccttcctctctattATAAAACTGAAAGGAGACTGAAAAGAGGAACAGTAGAGCTGGAAAACAAAGAAAGACACTGAAAGAGTACGGCATagaaaggacagggagagagagagacggggtaaAATAACGGGACGTGcgtgaagagagagaaagcgagacagacagagctcAGTGCAGCAGTATCACCACTTCCACCACCTCTCTTCCATAGCTACCtttacctcctccctccctccctccctcctcctttctgtaTTCCATCTCCCctggttctccctccttctctctgtactcCATCTcccctggttctccctcctcctctctctactccatcTCCCCTGGTTCTCCCTACTCCTTTCTGTACTCTGTGTCCCCTGgttctcctcttctctgtctacTACTATTACCGACAGCAGGACCATGGATACAGGAAGCCCCAGGAAGATCCAGTTCACCATGCCTCTCCTGGACTCACACCTGGACCCAGAGGCTgctgaacagatcagaaGACGTCGGCCCACACCTGCTACTCTGGTAGCATCCAGTGACCAGTCTTCTCCAGAAATAGATGAAGACCGTCTTCCAAACCAGTTATACAAGGCAGCCTTGATGAACTCTCCCAGGCAGAGGAGGAAGGGAGCAAGAGCCACGCCCACTATGAAAGagttacagttcatggtCGACCACCACCTAtatcaacagcagcagcagcagggtgGAGGTGATGAGTGTTCCTCAGAGAGCTGTCTGTCCGACAGACCCAGCCCGGACGCTCTGCCCaacggggaggaggaggaggagctggagcTACCGGAGGACGAGGAGGCCTGGGGAACCGAGGACAAGGTCATTGCAGAGGCCTTCGAGAAGCCGTGCTGCCAGATGGAGGCAGAGTTTTCGCGGAACAGTCTATCAGAAGCTACAGGGGGACATGAGTGCCCCCTCTCCGAGGAGGAAGTGGGATGCTCCGCCGTTCTCATGGCAGCAACATCATCGTCACAACAACAACACGCACTAGCAGCTGCAGACACAACAGCTGCGTCCACAGCGAGTCCACTGGCAGAGAAGAACACGAAGACACCCAACCAGGCCAAACAAGACAAGTAGAACCGTAGAACCGTCTCCACAGCAACCTGGCATGCATCctaagtggcaccctattccctagctATGAAGTGTACTCCTTTTGatcagagtagtgcactatacagggaatagggtgccacttggaaCGCAAACCTGACGTTCAATAAGTaacttagacagacagacagaagacagacaATGACTGACCATCCTTTTGACAGACAGACTTACGGCTGAATTCAATCTGTATCACAGAGGTATCGCAGAAGATTCGCATTAAAATGCAAATTCATTAAaatgctaatttattaaaatgcaaattcattaaaatgcaaattcaTTCATCAAATTCATTCAAATACTACTTAAGagttttttgggtatctgtactgtactttactatatatatttttgacaacttttacttttactccgctacattcctaaagaaaatcatgtattttttactccatacattttccctgacacctagaAGTACTCGTTACGTTTTGaattgcttagcaggacaggaaaatggtccgatttacacacttatcaagaaaacatccctggtcatccctactgcctctgatctggcggactcactaaacacaaatgcttt

Function

symbol description
ppp1r1a Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to be active in cytoplasm.

NR:

description
protein phosphatase 1 regulatory subunit 1A-like isoform X1

GO: NA

KEGG:

id description
K08050 PPP1R1A; protein phosphatase 1 regulatory subunit 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950903.1 False 1958 mRNA 0.49 8 87260493 87296463
XM_036950904.1 False 1954 mRNA 0.49 8 87260494 87296463
XM_036950905.1 True 1784 mRNA 0.49 8 87260496 87296463

Neighbor

gene id symbol gene type direction distance location
col2a1b LOC106566180 coding downstream 226388 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 379657 86798065 ~ 86880836 (-)
LOC110494797 LOC106596199 coding downstream 486028 86740548 ~ 86774465 (-)
LOC110495202 LOC106566175 coding downstream 545567 86711453 ~ 86714926 (-)
tespa1 LOC106566176 coding downstream 563006 86673452 ~ 86697487 (-)
npffl npff coding upstream 12962 87309425 ~ 87319111 (-)
itga7 LOC106566153 coding upstream 35776 87330714 ~ 87413554 (-)
LOC110495200 LOC106566159 coding upstream 197641 87494104 ~ 87507588 (-)
LOC110493297 LOC106566189 coding upstream 848153 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 865653 88162116 ~ 88175346 (-)
G1501679 NA non-coding downstream 16901 87243355 ~ 87243592 (-)
G1501672 NA non-coding downstream 29663 87229227 ~ 87230830 (-)
G1501650 LOC106566166 non-coding downstream 93693 87134058 ~ 87166800 (-)
G1501128 NA non-coding downstream 130369 87124254 ~ 87130124 (-)
G1501117 NA non-coding downstream 150432 87109835 ~ 87110061 (-)
G1501721 NA non-coding upstream 43742 87340205 ~ 87340469 (-)
G1501768 NA non-coding upstream 133900 87430363 ~ 87486836 (-)
G1501774 NA non-coding upstream 144398 87440861 ~ 87442058 (-)
G1501776 NA non-coding upstream 151593 87448056 ~ 87449891 (-)
G1500834 LOC106566150 other downstream 809759 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1017565 86236554 ~ 86242991 (-)
G1499684 NA other downstream 1972376 85251788 ~ 85288117 (-)
G1501745 NA other upstream 98317 87394780 ~ 87395835 (-)
G1502489 NA other upstream 1061689 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1253903 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1576312 88872775 ~ 88877452 (-)

Expression


Co-expression Network