npffl (npff)


Basic Information

Item Value
gene id npffl
gene name npff
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87309425 ~ 87319111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570513.2
GTAGCTGGGACTCCAGAAGATCGAGTCAGAGCAAGACCGAGAGCAGCAAGACCAAGAGCATCTCGCCTAAAGACTTGCGCCAGCATCCGAAGATAAGAGCAGTAAAGAACAGTGAAACCAACAGGTGTGAGCTCCATCCTCCGTCCgtctcccatccatccatccatccgacGTCCTCACCACCCACCCAGAGAACAGAATCATGAACGTTGACACAGCGCTGTGGGGGGTCCTGGTAGGTCTGATCCTAGCCATGGCTGGGGTGGGTCAGTGTCTGCAGGAGGAGAGGGCTGTGGAGAACAACAATCTGCCAGGGGAATCAGGAGAGGTGCTGGCACTGGAGGGCGAGCGCGTGGAAGGGTTTAATGAGTTGGACGATCGTCTCCTAGCCGCTGTGATTCACTCTCTGCTCCAGAGAAACACCAGGAACCCCTCCGTTCTCCACCAGCCTCAGAGGTTTGGTCGTGACAGCAGAGGACACTTGATGATGGAGGACAGGATACAGTCCAGAGACTGGGAGCAGGCTCCAGGACATATCTGGGGCATGGCTGTGCCGCAGAGATTTGGCAAGAAATAGGCTTTGGTTGAGACTCAACATCTCACTCACATCTCTGCTGGTAATAAAGAATGTGGTTCAACACCCAGAAAATATAGGTTGAAAGTAAAATATGGACTCATACATTATCCAGTAGATAAATGTTCTCTCTCCCTAACCTGCTGAGTTCCATTCCATTAAGCTGTATAGAACTAGGAGATCTTGGAAACTAGTAAACACCCACCACTTCTCTCAGATTTTAGCAGTGCTGATTGGTGCATATTGGAAATCTGGGAGAAAGTTGAAAACAGAGTAGGTGCGCTTGATTTATCACGCCACATATTGGGGCGACCTGAAATCAAGTGCACCTAAAGTTAGAGCTGCTGTAAATTGGCAGCGTACTTTTGATCGTTGCTCTGCCATTCTCTGTTGAACCAATAAAGGCTTCTGACTTGACAGTGTCTGTTATGAGTGTTATGGGTGATTGGAGAGGGTAAATATTGACTCAATGTGAGCCTGAAGAGTGTATAGACTATTATTAGTGTATATTAGTGTATAGACCCTAGAGTTTCTCTGATCCACTTCTGTTGAGCCACAAGCTAGGTTTCCGTCCAACTGGCAACAGATTTTGATGCGAATATTATAAAACCTGCATTAAAAACAATATGTGTTTCCATCTAATTGACTTGTTGCCGATTAAAAGGCCGTGTGTGACGACATTGTGCacatgaaaatacatttttgcagGTTAAATTACACTGAAAAAAAACCaaacaagttaaatgggtttctgtTGCATTTTCCAAGtatactgatggttttgtcagaAGAAAAACGATTTAAATCACGACCCCCCTCTGGTGTTGACACATGAGCTCTAAGCCatcagctcacagatacagtgtagGTATAGCCTATATGATGAGATTATTAGGGACAAAAGAGTCAGATTATTTTCATTTGTCAAACGGTAGCCAAGTATCATGTCACCGGAATAAAACCCGGGATATTTATCGTAAAGGAGCATCAATCTCATCACCTTGTACTTTCACCACCTTGTGAAGTTCATCACAATTCATTTAATCTGTAGCCAAATAAACTTCATGCTTTCCTGAGTGGTAGTGGGAGGACAGTGggggtaaagtacttaagtaaaaatactttaaagtacttcttaagaggtatctgtactttactatt

Function

symbol description
npff Predicted to enable G protein-coupled receptor binding activity and neuropeptide hormone activity. Predicted to be involved in excitatory postsynaptic potential. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and perikaryon.

NR:

description
LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570513.2 True 1735 mRNA 0.44 4 87309425 87319111

Neighbor

gene id symbol gene type direction distance location
LOC110494790 ppp1r1a coding downstream 12962 87260493 ~ 87296463 (-)
col2a1b LOC106566180 coding downstream 275320 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 428589 86798065 ~ 86880836 (-)
LOC110494797 LOC106596199 coding downstream 534960 86740548 ~ 86774465 (-)
LOC110495202 LOC106566175 coding downstream 594499 86711453 ~ 86714926 (-)
itga7 LOC106566153 coding upstream 13128 87330714 ~ 87413554 (-)
LOC110495200 LOC106566159 coding upstream 174993 87494104 ~ 87507588 (-)
LOC110493297 LOC106566189 coding upstream 825505 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 843005 88162116 ~ 88175346 (-)
LOC110494815 NA coding upstream 862572 88181683 ~ 88183757 (-)
G1501686 NA non-coding downstream 14069 87258220 ~ 87295356 (-)
G1501699 NA non-coding downstream 30844 87278092 ~ 87278581 (-)
G1501679 NA non-coding downstream 65833 87243355 ~ 87243592 (-)
G1501672 NA non-coding downstream 78595 87229227 ~ 87230830 (-)
G1501650 LOC106566166 non-coding downstream 142625 87134058 ~ 87166800 (-)
G1501721 NA non-coding upstream 21094 87340205 ~ 87340469 (-)
G1501768 NA non-coding upstream 111252 87430363 ~ 87486836 (-)
G1501774 NA non-coding upstream 121750 87440861 ~ 87442058 (-)
G1501776 NA non-coding upstream 128945 87448056 ~ 87449891 (-)
G1500834 LOC106566150 other downstream 858691 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1066497 86236554 ~ 86242991 (-)
G1499684 NA other downstream 2021308 85251788 ~ 85288117 (-)
G1501745 NA other upstream 75669 87394780 ~ 87395835 (-)
G1502489 NA other upstream 1039041 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1231255 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1553664 88872775 ~ 88877452 (-)

Expression


Co-expression Network