LOC110519410 (LOC106566157)


Basic Information

Item Value
gene id LOC110519410
gene name LOC106566157
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87433711 ~ 87441188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950911.1
TCCCAACCCACACACTCCATGTATACACACTCACAAATAAACCCCTCCACGTACACACAGCTTTCAGATTACAAATTGCAGATTGTCTTAAAGGATCAACTAGGGGGGATAAAGCCCTTTCTCTGCCAGTCACTCACAGTGACACAACACCTACTGGCTGCAGGGACCGAATTGTTACGGTCAGAGAGTAAAGAGGCAGACCTGTGGACCAGTAAACCACTGATAACAGGCTTCACAGGGATTCATTTTTCTACACCTCCATAAAATCCCTTCTCGGAACTCATTGTGGATATGGATTCTGTGTACCAGTATTTAGGATATCCAGCACAAGCCAACGACGATTCAGGGACTTCAAGGGATAATCTATGGCTGTACGGCGTGGGTACCTTCATGGTTCTGTGGGCCCTCGGCTGGCTGTACAgagacagtctggagatagaGGATATCAAGGAGAAGTATGTGTTTGTGACGGGGTGTGACTCTGGCTTCGGGAACTTGCTCTGTAAGAGGCTGGACCGACGGGGGTTCAGGGTGATAGCTGGGTGTCTCACAGACAAAGGGGCTGATGATCTGAAGAGGGCGACTGGGCCGTACCTAAAGACGGTTCTCCTAGACGTGACGAGCACCGGCAGTATACAGAAAGCTATGGAGTACACCAAGCAGGAGGTTGGAGATAACGgaCTGTGGGGCATTGTGAACAATGCGGGGCGCTCCCTGCCCATGGGTCCCTCAGAGTGGATGAGGCTGGAGGACTTTACCAGTACCCTGAAGGTCAACATGACGGGGGTGATAGAGATGACCCTCACCTTCCTGCCCCTCATCAAACAGGCCCAGGGGAGGATTGTTAATGTAGCATCAGTACTGGGTAGAGTGGCAGCTAATGGAGGTGGATACTGCATCTCTAAGTTCGCTGTGGAGTCTTTCTCAGACTGCCTCAGGAGGGATATCCACTACTTTGGAATCAAGGTGTGCATCATTGAACCGGGTTTCTTTAAGACAGCGGTGACCAGTCTGGATCCCATCGAGAGAGAGCTGCATCGCCTGTGGAACCAGCTCACACCTGAAGTAAAGGCCAGCTACGGAGACAAATACCTGGAAAAGtACATCCAGATCCAACGGTTGATCATGAACGCAGTGTGTGACTCGGACCTGAGTAAAGTGACTAACTGCATGGAGCATGCCTTGGCGTCTAGCTACCCCCGAACCCGCTACAGTGCCGGCTGGGACGCTAAATTGGGATGGATCCCCCTCTCTTACATGCCATCCTGTGTCATCGATATTGGGCTGAAACTGGTGATGCCACGACCTGCTAAGAGTGTCTAGAGTTAATTAGCACACAATACATtgcaatataatacaatataaacccatactatacaatacagtACTAAAGAATACAAAAATAATGTATTGTTTGAGTTCAAATGTACAGAACGTAGAGTAGC
>XM_036950912.1
TCCCAACCCACACACTCCATGTATACACACTCACAAATAAACCCCTCCACGTACACACAGCTTTCAGATTACAAATTGCAGATTGTCTTAAAGGATCAACTAGGGGGGATAAAGCCCTTTCTCTGCCAGTCACTCACAGTGACACAACACCTACTGGCTGCAGGGACCGAATTGTTACGGTCAGAGAGTAAAGAGGCAGACCTGTGGACCAGTAAACCACTGATAACAGGGTGGCATAGCTGGTTCTGATGCATGACATGCTTCACAGGGATTCATTTTTCTACACCTCCATAAAATCCCTTCTCGGAACTCATTGTGGATATGGATTCTGTGTACCAGTATTTAGGATATCCAGCACAAGCCAACGACGATTCAGGGACTTCAAGGGATAATCTATGGCTGTACGGCGTGGGTACCTTCATGGTTCTGTGGGCCCTCGGCTGGCTGTACAgagacagtctggagatagaGGATATCAAGGAGAAGTATGTGTTTGTGACGGGGTGTGACTCTGGCTTCGGGAACTTGCTCTGTAAGAGGCTGGACCGACGGGGGTTCAGGGTGATAGCTGGGTGTCTCACAGACAAAGGGGCTGATGATCTGAAGAGGGCGACTGGGCCGTACCTAAAGACGGTTCTCCTAGACGTGACGAGCACCGGCAGTATACAGAAAGCTATGGAGTACACCAAGCAGGAGGTTGGAGATAACGgaCTGTGGGGCATTGTGAACAATGCGGGGCGCTCCCTGCCCATGGGTCCCTCAGAGTGGATGAGGCTGGAGGACTTTACCAGTACCCTGAAGGTCAACATGACGGGGGTGATAGAGATGACCCTCACCTTCCTGCCCCTCATCAAACAGGCCCAGGGGAGGATTGTTAATGTAGCATCAGTACTGGGTAGAGTGGCAGCTAATGGAGGTGGATACTGCATCTCTAAGTTCGCTGTGGAGTCTTTCTCAGACTGCCTCAGGAGGGATATCCACTACTTTGGAATCAAGGTGTGCATCATTGAACCGGGTTTCTTTAAGACAGCGGTGACCAGTCTGGATCCCATCGAGAGAGAGCTGCATCGCCTGTGGAACCAGCTCACACCTGAAGTAAAGGCCAGCTACGGAGACAAATACCTGGAAAAGtACATCCAGATCCAACGGTTGATCATGAACGCAGTGTGTGACTCGGACCTGAGTAAAGTGACTAACTGCATGGAGCATGCCTTGGCGTCTAGCTACCCCCGAACCCGCTACAGTGCCGGCTGGGACGCTAAATTGGGATGGATCCCCCTCTCTTACATGCCATCCTGTGTCATCGATATTGGGCTGAAACTGGTGATGCCACGACCTGCTAAGAGTGTCTAGAGTTAATTAGCACACAATACATtgcaatataatacaatataaacccatactatacaatacagtACTAAAGAATACAAAAATAATGTATTGTTTGAGTTCAAATGTACAGAACGTAGAGTAGC

Function

NR:

description
PREDICTED: retinol dehydrogenase 7-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950911.1 False 1445 mRNA 0.49 7 87433711 87441188
XM_036950912.1 True 1475 mRNA 0.49 8 87433711 87441188

Neighbor

gene id symbol gene type direction distance location
LOC110494789 bloc1s1 coding upstream 1771 87415720 ~ 87486890 (+)
LOC110494792 LOC106566161 coding upstream 179636 87181451 ~ 87254075 (+)
nckap1l LOC106566166 coding upstream 261426 87134096 ~ 87172285 (+)
LOC110494793 LOC106566167 coding upstream 488885 86925395 ~ 86944826 (+)
myg1 cssa12h12orf10 coding upstream 524011 86883315 ~ 86909700 (+)
LOC110494787 LOC106566158 coding downstream 651 87441839 ~ 87480286 (+)
LOC110494786 LOC106566159 coding downstream 67721 87508909 ~ 87515178 (+)
LOC110493299 LOC106566196 coding downstream 115608 87556796 ~ 88016164 (+)
LOC118940111 NA coding downstream 586408 88027596 ~ 88031324 (+)
LOC110493298 LOC106566194 coding downstream 594176 88035364 ~ 88073938 (+)
G1501218 NA non-coding upstream 93253 87340152 ~ 87340458 (+)
G1501171 NA non-coding upstream 192350 87241130 ~ 87241361 (+)
G1501169 NA non-coding upstream 197114 87236383 ~ 87236597 (+)
G1501165 NA non-coding upstream 202089 87231335 ~ 87231622 (+)
G1501156 NA non-coding upstream 243436 87182060 ~ 87190275 (+)
G1501298 NA non-coding downstream 60052 87501240 ~ 87502220 (+)
G1501305 NA non-coding downstream 84952 87526140 ~ 87527748 (+)
G1501316 NA non-coding downstream 101111 87542299 ~ 87546185 (+)
G1501362 NA non-coding downstream 184975 87626163 ~ 87626792 (+)
G1501436 NA non-coding downstream 354927 87796115 ~ 87796473 (+)
G1501148 NA other upstream 264704 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 906681 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1050166 86382298 ~ 86383545 (+)
G1500198 NA other upstream 1165536 86267328 ~ 86268175 (+)
G1499923 LOC106566127 other upstream 1721852 85625443 ~ 85711859 (+)
LOC110494816 LOC106566192 other downstream 648469 88089634 ~ 88143474 (+)
G1502352 NA other downstream 1328682 88769870 ~ 88800640 (+)
G1502370 NA other downstream 1365790 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 1664983 89106147 ~ 89150807 (+)
G1503119 NA other downstream 2327369 89768557 ~ 89786154 (+)

Expression


Co-expression Network