LOC110495200 (LOC106566159)


Basic Information

Item Value
gene id LOC110495200
gene name LOC106566159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87494104 ~ 87507588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950913.1
ttGAATTTTGTAACCATAGATACATCAGGTTGGGTGTTCTCGTGTCTCCTGAGGGTATAAAACAGGGACCGGAATATTCCATCAGGACAGACTGACACTGACAGACTGAAAACATGCTGAGGTTCGTCCTGTTGAGCGCTCTCGCAGCTCTGGTGCTGTCTGAGAATCTGGTTCCCCAGCCCAGATACCTGGAAGATGGAGCTGAGCAAAGAGTTGTGGGTGGCGAGGTCGCCCAGCCCAACTCCTGGCCCTGGCAGATCTCTCTCCAGTACCTGTCTGGCAGCTCCTACTACCACACCTGTGGAGGTAGTCTGATCAGGAGAGGATGGGTCATGACTGCTGCTCACTGTGTGGACAGCCAGAGGACTTGGCGTGTGGTTCTGGGAGACCACAACCTGAACAGCAACGAGGGTAAGGAGCAGATCATGACCGTCAGCAAAGTCTACATCCACAATGGGTGGAACTCAAACAACATCGCTGCAGGAAATGACATCGCTCTGCTGCGTCTGTCCAACGAGGCTTCCCTGAACTCTGCTGTCCAGCTGGCTGCTCTTCCTCCATCTGGCCAGATCCTGCCCAACAACAACCCGTGCTACATCACCGGATGGGGACGCACCCAGACCGGCGGTTCTCTGTCCAACAGCCTGAAACAGGCTTGGCTGCCCAGCGTTGACCACCAGACCTGCTCCAGCTCTAGCTGGTGGGGATCTTCCGTCAAGACCACCATGGTCTGTGCCGGTGGTGGAGCCAACTCTGGTTGCCAGggagactctggcggccccCTGAACTGCCAGGTCAACGGTCAGTACTATGTCCACGGTGTGACCAGCTTCGTTTCCTCTTCTGGATGCAACGCCACCCGCAAGCCCACCGTCTTCACCCGTGTGTCTGCCTACATCAGCTGGATGAACGGGATCATGGGTTGAAAGGGAACATGGTCTTCGAGCAGATTGAACCCAGATTCATCCCTGACCCTGCTCAACTACACCAACATTCTGCTCTAAAAGTTCAATAAACTTAATTGACTTTGGAGTAAA

Function

NR:

description
chymotrypsin-like elastase family member 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950913.1 True 1037 mRNA 0.55 8 87494104 87507588

Neighbor

gene id symbol gene type direction distance location
itga7 LOC106566153 coding downstream 80550 87330714 ~ 87413554 (-)
npffl npff coding downstream 174993 87309425 ~ 87319111 (-)
LOC110494790 ppp1r1a coding downstream 197641 87260493 ~ 87296463 (-)
col2a1b LOC106566180 coding downstream 459999 86950210 ~ 87034105 (-)
LOC110493290 map3k12 coding downstream 613268 86798065 ~ 86880836 (-)
LOC110493297 LOC106566189 coding upstream 637028 88144616 ~ 88159004 (-)
dnsl3 dnsl3 coding upstream 654528 88162116 ~ 88175346 (-)
LOC110494815 NA coding upstream 674095 88181683 ~ 88183757 (-)
zgc:171566 LOC106566184 coding upstream 726096 88233684 ~ 88245505 (-)
LOC110494809 LOC106566197 coding upstream 929658 88437246 ~ 88600371 (-)
G1501768 NA non-coding downstream 7268 87430363 ~ 87486836 (-)
G1501795 NA non-coding downstream 12135 87481723 ~ 87481969 (-)
G1501793 NA non-coding downstream 13104 87479948 ~ 87481000 (-)
G1501792 NA non-coding downstream 19077 87473705 ~ 87475027 (-)
G1501776 NA non-coding downstream 44213 87448056 ~ 87449891 (-)
G1501803 LOC106566159 non-coding upstream 2399 87509987 ~ 87515194 (-)
G1501867 NA non-coding upstream 135984 87643572 ~ 87646232 (-)
G1501896 NA non-coding upstream 189493 87697081 ~ 87701702 (-)
G1501911 NA non-coding upstream 223543 87731131 ~ 87787054 (-)
G1501913 NA non-coding upstream 225515 87733103 ~ 87765954 (-)
G1501745 NA other downstream 98269 87394780 ~ 87395835 (-)
G1501650 LOC106566166 other downstream 334860 87134058 ~ 87166800 (-)
G1500834 LOC106566150 other downstream 1043370 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1251176 86236554 ~ 86242991 (-)
G1502489 NA other upstream 850564 88358152 ~ 88425505 (-)
G1502566 NA other upstream 1042778 88550366 ~ 88552831 (-)
LOC110493292 NA other upstream 1365187 88872775 ~ 88877452 (-)
pcbp4 LOC106566209 other upstream 2068373 89575961 ~ 89725809 (-)

Expression


Co-expression Network