LOC118940111


Basic Information

Item Value
gene id LOC118940111
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88027596 ~ 88031324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036713.1
gaagtactgtGACAGAAATGCTTGTACGAACTCGAACCCAggcacagagaaacacagcaagCAGAGAAGACTGGGGGGGAggagtgtgaggagaggaggggtgtttcccaaatggcatcctattccctattaagtgcactacttttgcccatgAAGCCCATGGGGCTCATTTTGGAAGCAGAAGAGGAGATGCTGCCAACAACCAAAACTCAGTGGATGCCCTGTGTTGCATTCTGATGAGGCACTGCCTCTTCTTCATCACTTCGGCTGTGTTTCATTCTAAGATGTTCCCCCTTACTTCTACCCTCGTTCCCTTCCTTTAGTGGATCTGAGACAACTGGTCCTCCCGGtgttgacccttgcctgttttctggactctgtacccgccggcctgaccaatcagcctgccc
>TU1716746
gaagtactgtGACAGAAATGCTTGTACGAACTCGAACCCAggcacagagaaacacagcaagCAGAGAAGACTGGGGGGGAggagtgtgaggagaggaggggtgtttcccaaatggcatcctattccctattaagtgcactacttttgcccatgAAGCCCATGGGGCTCATTTTGGAAGCAGAAGAGGAGATGCTGCCAACAACCAAAACTCAGTGGATGCCCTGTGTTGCATTCTGATGAGGCACTGCCTCTTCTTCATCACTTCGGCTGTGTTTCATTCTAAGATGTTCCCCCTTACTTCTACCCTCGTTCCCTTCCTTTAGTGGATCTGAGACAACTGGTCCTCCCGGtgttgacccttgcctgttttctggactctgtacccgccggcctgaccaatcagcctgccctgacctcaagcctgtctgccactttgtacctcctggactctgtacctcctggactctgtacccgccggcctgaccagtctgcctgccctgacctcaagcctgcctgaccagtctgcctgccctgacctcaagcctgcctgccactctgtacctcctggactctgtaccctcctgcctgaccattctgcctgccctgacctcaagcccgcctgccactctgtacctcctggactctgtaccctcctgcctgaccattctgcctgcccttacctcaagcctgcctgccactctgtacctcctggactctgtacccgccggcctgaccagtctgcctgccctgacctcaagcctgcctgaccagtctgcctgccttgacctcaagcctgcctgccactctgtacctcctggactctgtaccctcctgcctgaccattctgcctgccctgacctcaagcctgcctgccactctgtaccctcctgcctgaccattctgcctgccctgacctcaagcccgcctgccactctgtacctcctggactctgaacttgTTTTGACCTTtggcctgtccacgaccattctcttgcctcctccttttggattattaataaatatcaaagactcaaaccatcttcctcccgtgtctgcatctgggtctctgggtctcgccttgtgcccttatactcACTTGCCCAGTCCTATCAGATCTATAACGGGAGGGAAGTGAATGACGGCACGGGGAGGGAACATCTTCTTGGAATGAAACACACCCATGTTGCTACCCCAGACTTACCTTGAATAAAGACTGTCCTACAACCGAGTGATCATCATAATAAATCATGGTATTATGGATGCATTACTTTAATACATACATCCATAGAACCGTAGCATCGCACTTTTCAATGATTTATGGTTTTTTTAGGTCTATGTTAGTGCATTCGACACGCTTTCCAGAACATATTATTCTATTTAGGAAGTTATTCAGAGAATACAATGATATGCTTTGTGAGTTTTGTATGTAGGCTACATGATTTATGCAGTTGTCTACTCAATTTAGTGTTAATATACTGTACGTGTACTGTATTATAGAATAGATAACTACAGAGGTAATGTCTGATGTTTTCTTCCAAGCCTATCTAGGAATGGTAAAATTCTCTTCACTTCCGCGGTACATTCACATTCACATACTGTACCAGGCTATTCAACATCCCCTTTTCTGATCACAAGTGGAATTGATGTGTTTTAGGACAGAAACAGTATCCCAGGTTCCGACCTCATAATATTTGTCAGTTTTCCAGGCAAAATCGTTTCCACCTAAGTATTAATTTATCCTGTCAGATCTCGCAGTGCAATTAGTGGGCCCAGCCGTATGTCTCAGATAAGACGGCAGCAGTGCTCTAGTGGTCACAGAGGCTCGACTTTGCATCCTGTTCATTAAGAGCTGTAGATAAGAGGATTAGCAATTACAATTGGGACATGGTATGCGtcctgaatggcaccctattacttttgcattacttttgac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106573259

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036713.1 False 410 mRNA 0.52 3 88027596 88029802
TU1716746 True 1932 lncRNA 0.49 3 88027596 88031324

Neighbor

gene id symbol gene type direction distance location
LOC110493299 LOC106566196 coding upstream 11432 87556796 ~ 88016164 (+)
LOC110494786 LOC106566159 coding upstream 512418 87508909 ~ 87515178 (+)
LOC110494787 LOC106566158 coding upstream 547310 87441839 ~ 87480286 (+)
LOC110519410 LOC106566157 coding upstream 586408 87433711 ~ 87441188 (+)
LOC110494789 bloc1s1 coding upstream 595656 87415720 ~ 87486890 (+)
LOC110493298 LOC106566194 coding downstream 5562 88035364 ~ 88073938 (+)
LOC110494817 LOC100136539 coding downstream 44593 88074395 ~ 88079956 (+)
LOC110494816 LOC106566192 coding downstream 59832 88089634 ~ 88143474 (+)
LOC110494814 LOC106566185 coding downstream 153926 88183728 ~ 88186192 (+)
LOC110493296 mcm2 coding downstream 156552 88186354 ~ 88200745 (+)
G1501513 NA non-coding upstream 299 88027047 ~ 88027297 (+)
G1501482 NA non-coding upstream 134386 87891174 ~ 87893210 (+)
G1501474 NA non-coding upstream 154740 87872599 ~ 87872856 (+)
G1501472 NA non-coding upstream 157640 87869751 ~ 87869956 (+)
G1501464 NA non-coding upstream 168411 87858793 ~ 87859185 (+)
G1501527 NA non-coding downstream 24407 88054209 ~ 88054640 (+)
G1501536 NA non-coding downstream 53688 88083490 ~ 88083701 (+)
G1501538 NA non-coding downstream 56124 88085926 ~ 88187504 (+)
G1501543 NA non-coding downstream 69079 88098881 ~ 88102358 (+)
G1501148 NA other upstream 858589 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1500566 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1644051 86382298 ~ 86383545 (+)
G1500198 NA other upstream 1759421 86267328 ~ 86268175 (+)
G1502352 NA other downstream 740068 88769870 ~ 88800640 (+)
G1502370 NA other downstream 777176 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 1076369 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1738755 89768557 ~ 89786154 (+)

Expression


Co-expression Network