LOC110494817 (LOC100136539)


Basic Information

Item Value
gene id LOC110494817
gene name LOC100136539
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88074395 ~ 88079956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570149.2
GGTCTGCTAGACCACGTGTCAGGTATAAATACATTTCGTCTCGGCTTCAGACGCGTCTCGCACCAAGCACTTCAGGAGAAGCTACAGACACCGTGGACTATCGCACTGTACACCATGGCACTCAAGAAAGTATGCATCATTGGCTCTGGCAACTGGGGCTCTGCCATTGCCAAGATTGTAGGCGTCAATGCAGGAAAGCTTGACGTGTTCGACACGACAGTGAACATGTGGGTATTTGAGGAGACCGTGAACGGACGTAAACTCACAGAGATCATCAACACAGACCATGAGAACGTCAAGTACCTGCCCGGACACAAGCTTCCCCCAAACATCGTGGCTGTTCCAGAGGTGACGGATGCTGTGAAGGGAGCAGACATCTTGATCTTCGTTATTCCACACCAGTTCATCAACAGAATCTGTGACACCATCAAAGAACACATCAAGAAGGATGCTGTGGGCATGTCTCTTATCAAAGGTGTGGATGAGGGGCCAGAGGGGTTGAAGCTGATCTCTGATGTCATCAGAGAGAAGCTGGGCGTCACCATGACGGTGCTGATGGGAGCTAACATAGCCAACGAAGTCGCGGAGGAGAAGTTCTGCGAAACAACAATCGGGTGCAAGAACAAAGAGTGGGGCCCCATCCTGAAGAAACTGATGCAGACCACGAACTTCAGAGTTACCGTGGTGGAGGAAGCTGATGTGGTAGAGATCTGTGGCGCTCTCAAGAACATAGTGGCGGTAGGAGCAGGGTTCTGTGACGGCCTGGGCTTCGGAGATAACACCAAGGCGGCGGTAATCAGACTGGGGCTGATGGAGATGATTGCCTTCGCCCGGATATTCTGCACCGCTGGGCCCGTCTCCCCCGTCACTTTCCTGGAGAGCTGCGGCGTCGCCGACCTCATCACAACTTGCTACGGCGGACGCAACCGTAAGATCGCAGAGGCCTTCGCCAAAACCGGAAAGACTATTGAGGAGTTGGAGAAGGAGATGTTGAATGGGCAGAAGCTCCAGGGTCCGGCCACTGCAGCTGAAGTCAACCACATTCTGAAGAAGAAGGGCCTGGTGGACAAGTTCCCCTTGTTCAATGCTGTCAACCAGATCTGTTTCCACGGACACCCCGTCAAAGAGTTCATCACCTGTTTGCAGAACCACCCTGAACACATGTGACTGACTGAAAGATGCTGGGACGCTTTAAATGTTGGAACCAGCCGAAGGAGGCGAGGCTGACGAGGAGCGGGTTGGACGATGATTCCACCTCATCTAAATGTCTAAATACTACGGAGTGGACCACAAAACACCTCAGAAAGAGAACTTCTCAGTCAAACCGACCTCTGGTTCTGGGCTGCTGTAATATGCCACTACAATATCATCAAAAATACCGTTTGTTCCGACTGATTCTTAAGTTGTTATTGGTCTTGTTGCCACTAGGTAATATGTCAGATTttccaaaaaatacattttgtttagAAGAATGTCCCTTGGCCTTAAACAGGTGAATTGTCTTCTGAGAGGGGAAGGTCTATTTTTGTGTAAGTTGCATTTTCCATAGTCGGCGAATCccacacaaaaacacatgaaAGAAGTGCCTTAATCTACTTTTTGATCCAGTCACTGGTAAATATTTGTCTTGCGAACAGATTTTATTACCTTGTTATGTTTGACAAAGGACTTGAATAAACAACCGTTATTCACTGCTTA

Function

NR:

description
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570149.2 True 1698 mRNA 0.49 8 88074395 88079956

Neighbor

gene id symbol gene type direction distance location
LOC110493298 LOC106566194 coding upstream 457 88035364 ~ 88073938 (+)
LOC118940111 NA coding upstream 44593 88027596 ~ 88031324 (+)
LOC110493299 LOC106566196 coding upstream 58231 87556796 ~ 88016164 (+)
LOC110494786 LOC106566159 coding upstream 559217 87508909 ~ 87515178 (+)
LOC110494787 LOC106566158 coding upstream 594109 87441839 ~ 87480286 (+)
LOC110494816 LOC106566192 coding downstream 9678 88089634 ~ 88143474 (+)
LOC110494814 LOC106566185 coding downstream 103772 88183728 ~ 88186192 (+)
LOC110493296 mcm2 coding downstream 106398 88186354 ~ 88200745 (+)
LOC110493295 LOC106566198 coding downstream 123941 88203897 ~ 88233393 (+)
LOC110493294 LOC106566182 coding downstream 292122 88372078 ~ 88421226 (+)
G1501527 NA non-coding upstream 19755 88054209 ~ 88054640 (+)
G1501513 NA non-coding upstream 47098 88027047 ~ 88027297 (+)
G1501482 NA non-coding upstream 181185 87891174 ~ 87893210 (+)
G1501536 NA non-coding downstream 3534 88083490 ~ 88083701 (+)
G1501538 NA non-coding downstream 5970 88085926 ~ 88187504 (+)
G1501543 NA non-coding downstream 18925 88098881 ~ 88102358 (+)
G1501600 NA non-coding downstream 143058 88223014 ~ 88223747 (+)
LOC110494789 bloc1s1 other upstream 587505 87415720 ~ 87486890 (+)
G1501148 NA other upstream 905388 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1547365 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1690850 86382298 ~ 86383545 (+)
G1500198 NA other upstream 1806220 86267328 ~ 86268175 (+)
G1502352 NA other downstream 689914 88769870 ~ 88800640 (+)
G1502370 NA other downstream 727022 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 1026215 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1688601 89768557 ~ 89786154 (+)

Expression


Co-expression Network