LOC110493297 (LOC106566189)


Basic Information

Item Value
gene id LOC110493297
gene name LOC106566189
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88144616 ~ 88159004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950920.1
gggggagagaggaggaaccgAGACAGGCAGTGTGGGGCCACGAAGAGGAGAAAGTTGAATGGGTTGTCTAACTGGTTCTGCAGAGTGAGAATAACATAACCACCCCCACCCTGGGGAAGAGGAGTTTATAAGGAGGGCAGAACACCTGAGACAACTCACTGAGGTCAGATAGCCCCGCTGCTGTCCTGTCCTCTTCTACAGCATAATTTAAATTCTCACTCGTCTCCGTCTGTGATTCTCAcgcgtctccatctctctgtctgtgattCTCAcgcgtctccatctctctgtctgtgaccctccctccacctctccgtCTGTgactctccctccacctctccatctctctgtctgtgtctgtgactctccctccacctctccatctccccttccaCCATGAGCCTGAGGTCCAAGCGTATCAGCAGCTCCAGTGGCTCTGTGCGGAGACACAGCGGGGGCTTCGGTGGCATGTCTCTGGGTAGCAGCTCTCTGTACGCGGGGGGCTCAAACGGCCACCACAGCAGTCCTTTCCACTCAGTCTCTGTCAACAGGAGCCTGCTGGCCCCCCTTAACCTGGAGATCGACCCCAACCTACAGGTGACGCGCATCCATGAGAAAGAGCAGATCAAGGGCCTCAACAACCGATTCGCATCCTTCATCGATAAGGTGCGTTTCCTGGAGCAGCAGAACAAGATGTTAGAGACTAAGTTTGATCTGCTGCACGGTAAGCAGACGGGCCGCTCCAACATCGAGCCGCTATTCGAGGTCTACATGGCCAACCTCCGCCGCCAGATGGACGTGGTCAACAACGACAAGACCAAGCTGGACGGCGAGCTGAGGAACATGCAAGGTCTGGTGGAGGACTTCAAACACAAATACGAAGATGAGATCAACAAGAGAAATAATCTGGAGAACGAATTTGTGATCCTGAAAAAGGATGTGGACTCAGCATACCTGGTGAAGGCAGACCTGGAAAACAAGGGAGGAGCTCTGACTGATGAGATAAACTTCCTCAGGTCCATCTATGAGGAGGAGCTGCGTGAGCTGCAGGCCAGCATCAGGGACACCTCTGTGGTGGTGCAGATGGACAACAGTCGAGACCTCAACATGGACCAGATAGTGGCTGACGTCAAGGCTCAGTACGAAGACATTGCTACCAAAAGCCGAGAGGAGGCTGAGACGTGGTACAAATCCAAGTTCAACCAGATGGCCGCCCAGGCCATGCAGTACGGAGACGAGCTGAGGAACACCAAGGGAGAGATAGCAGAAATCAACCGCTTGATCGGCCGTCTGCAGAGTGAGATGGAAGCTGTCAAAAGACTGCGAGCCAACCTGGAGGACCAGATAGCCGAGGCTGAGGGCCGCGGGGAGCTGGCTGTGAAGGAGGCTAAGTCCAGGATCAGAGATCTGGAGGATGCTCTGCAGAGGGCCAAGCAGGACATGGCCAGACAGCTCAGAGAGTACCAGGACCTGATGAACGTCAAGCTGGCTCTGGACATAGAGATAGCCACCTACAGAAAATtactggagggagaggaggacagGATTGGACATCAATCTATTCTCAACATCCAGTCAGTGTCCAACTACAGTTCTAAGAGTTCCAGTAATGGATACAACAGCAGCTCCATCTCCCCTACACCGAAGCTGCTGATTAAAACAACTGAACAAAAAGACAGCTCCAGATTCAGCTCTCATTAAAAAAAAACCTGTCGGATCCTTCTGGCTGAGGGTGAAGAACCATTATATAAGAGTTTATAACAGATCTATAGCAACTTTCTGGATTATTTGTGTCAATCTACATTCTGTAAAGAGCACGAGAGAATAGCATAAGATCATGACATGATAGATTTGTGTTTGTAGCTAGAGGAACATAAACATTTGTTGTTCTTActgtaaagaaaataaaaaagataTGTATCAGtatataaaaa

Function

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950920.1 True 1934 mRNA 0.51 9 88144616 88159004

Neighbor

gene id symbol gene type direction distance location
LOC110495200 LOC106566159 coding downstream 637028 87494104 ~ 87507588 (-)
itga7 LOC106566153 coding downstream 731062 87330714 ~ 87413554 (-)
npffl npff coding downstream 825505 87309425 ~ 87319111 (-)
LOC110494790 ppp1r1a coding downstream 848153 87260493 ~ 87296463 (-)
col2a1b LOC106566180 coding downstream 1110511 86950210 ~ 87034105 (-)
dnsl3 dnsl3 coding upstream 3112 88162116 ~ 88175346 (-)
LOC110494815 NA coding upstream 22679 88181683 ~ 88183757 (-)
zgc:171566 LOC106566184 coding upstream 74680 88233684 ~ 88245505 (-)
LOC110494809 LOC106566197 coding upstream 278242 88437246 ~ 88600371 (-)
LOC110493292 NA coding upstream 713916 88872775 ~ 88877452 (-)
G1502063 NA non-coding downstream 1208 88141454 ~ 88143408 (-)
G1502025 NA non-coding downstream 61032 88083384 ~ 88083584 (-)
G1502024 NA non-coding downstream 61510 88082801 ~ 88083106 (-)
G1502010 NA non-coding downstream 64621 88078423 ~ 88079995 (-)
G1502020 NA non-coding downstream 85991 88057432 ~ 88058625 (-)
G1502095 NA non-coding upstream 60027 88219031 ~ 88219950 (-)
G1502103 NA non-coding upstream 70627 88229631 ~ 88232062 (-)
G1502110 NA non-coding upstream 88389 88247393 ~ 88247610 (-)
G1502111 NA non-coding upstream 88907 88247911 ~ 88248323 (-)
G1501745 NA other downstream 748781 87394780 ~ 87395835 (-)
G1501650 LOC106566166 other downstream 985372 87134058 ~ 87166800 (-)
LOC110493290 map3k12 other downstream 1338085 86798065 ~ 86880836 (-)
G1500834 LOC106566150 other downstream 1693882 86449679 ~ 86450734 (-)
LOC110494779 ddit3 other downstream 1901688 86236554 ~ 86242991 (-)
G1502489 NA other upstream 199148 88358152 ~ 88425505 (-)
G1502566 NA other upstream 391362 88550366 ~ 88552831 (-)
pcbp4 LOC106566209 other upstream 1416957 89575961 ~ 89725809 (-)

Expression


Co-expression Network