LOC110494814 (LOC106566185)


Basic Information

Item Value
gene id LOC110494814
gene name LOC106566185
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88183728 ~ 88186192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950924.1
GGATGTTTGCGATGCGCCTGATCATAAAAGCATCATTCACGTTCTGTAGCCAGCTGATAATTTGCCGAACAATCAACGCTTGAAGACAACCGGTGGCAGCTCCAATGTCTTCTGCTGTAGTGTCATAGTGAATATAACCGACTGGCTTCTCAATGAGGTCCGGAGGGAAACCGCTCACACCATGGTGCCATGGAACATCATGTCTCTACCGTTTCCACATCCCTTGGACGGTCAGCGGGACTGTGTATTCCAGCAGGAGCTACAGCACACAACAACAGAAACCACCACAGCCAAAAGATGACCGAGTAGATAAACCTGCTGTGCCTATTCAGGAGCATGCCATAGCTACAATACAGAATCTGACTGACTTGGGGAAGCAATGGGGGCAGAAGTCTATGAGCACTGCCTCAAACACAGTTAACTACTGGTGGGAGAGGTACGAGGAGTTTGTAGGCCTGAATGAAGTCAGATATGCCCAGTCTAAAGTTACAGAGGCAGAAAAGGCCTTCATGGTGGCCAGAGGGATGGTGCGTGAGGCCCATGGCAGCCTGGAGGCCCTGCAGGTCCGGCTGAAGGAGGTGAGAGATCGACTGGATCGGGTCTCACGAGAGGAGGCCCACTACCTGGAGCTGGCCACGCTGGAGCACAAGTTGCTGCAGGAGGAACGTCGCATGCGAACAGCCTACGAAAACGCAGAGGGGGCTGAAAGGGAGAAGTTTGCCTTATTCTCAGCGGGTGTACGTGAGAGCCACGAGAAAGAACGGACGCGGACGGAGCGCACCAAGAACTGGTCCGTGATAGGCTCTGTACTCGGTACCTTCATAGGGGTCATGGGTTCTACCTATGTCAACAGGGTACGCCTACAGGAGCTGAAGACTTTACTACTAGAGGCCCAGAAAGGACCAGTCAACCTACAGGAAGCTATCAAAGTCCAGGCCAGTATGCATAAGACTCAACAAGAGGAACTGAGAGGCCTTATAGACACCCTGAGGACGGCACTACAGCATAGAGCAGCTCAGGCTGAGAAAGATGTGAAGAAGCCAGTGGCAGGTCCTGTTCTGGTTCCGGAACCCATCGTGGTTCCGCCTCCACCCCAACCCTCTCCAAGTGCCTCTGAGACAGTTCTAAAAGAGATATTGCTCTATAGCCAGAAGGCACAGGTTCTTATAGAAGGAGTCCAGCCCCAGCTTGGGCAGCTTGACCAGGGTGTTGGGAAGGTTGAGTCGGAACTCAAGGACGTGAAGAATTTAATTGAGACGTATCATAGAGAAGAGAAGCCACCTGTCGTGATAAGTCAACAAGATTCACAGATGTTTGTATGTGAAACAGAGAGTGTTATGCAAGGAATTGACCAGACGGAGAAAAGACTTGAGGCTCAGATAAACCAGACTACCATGTACAACGCTGTTCTGGCTTACGTTGCGCTTGCTGTCACTGTACCTGCGCTGTATATTTTCTTTAGAGGTGTTTGACTGATGTTATGTACTGTAaaatagtgttattaatccaacCATCTTGATTTACAATGAAATAATTACAAATTAATATTGTGATGTGCTATTCATGTCTTTTATACAGGGAAAATGAACCATGCACTGATGTGAAATCAATGACTGTATGAGAGTACTATAATTATGTTTAAATGCAATACATGATCAAATATTTAGAATTACAGTTCTTGATCTATTAAAATGTAATATGTTGTCAAATATTTTATGTTTTGAAAGTAGATTTGTTATATAAATTGTCACTCCTAGAAAAAAGAACATTAAACGTGTATTTCACACAAAAATCTG

Function

NR:

description
coiled-coil domain-containing protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950924.1 True 1796 mRNA 0.47 4 88183728 88186192

Neighbor

gene id symbol gene type direction distance location
LOC110494816 LOC106566192 coding upstream 40254 88089634 ~ 88143474 (+)
LOC110494817 LOC100136539 coding upstream 103772 88074395 ~ 88079956 (+)
LOC110493298 LOC106566194 coding upstream 109790 88035364 ~ 88073938 (+)
LOC118940111 NA coding upstream 153926 88027596 ~ 88031324 (+)
LOC110493299 LOC106566196 coding upstream 167564 87556796 ~ 88016164 (+)
LOC110493296 mcm2 coding downstream 162 88186354 ~ 88200745 (+)
LOC110493295 LOC106566198 coding downstream 17705 88203897 ~ 88233393 (+)
LOC110493294 LOC106566182 coding downstream 185886 88372078 ~ 88421226 (+)
LOC118940509 NA coding downstream 248156 88434348 ~ 88435516 (+)
LOC118940508 NA coding downstream 249754 88435946 ~ 88436832 (+)
G1501543 NA non-coding upstream 81370 88098881 ~ 88102358 (+)
G1501536 NA non-coding upstream 100027 88083490 ~ 88083701 (+)
G1501527 NA non-coding upstream 129088 88054209 ~ 88054640 (+)
G1501600 NA non-coding downstream 36822 88223014 ~ 88223747 (+)
G1501604 LOC101154678 non-coding downstream 61685 88247877 ~ 88248186 (+)
G1501611 NA non-coding downstream 74976 88261168 ~ 88261471 (+)
G1501585 NA non-coding downstream 97777 88283969 ~ 88292911 (+)
LOC110494789 bloc1s1 other upstream 696838 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1014721 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1656698 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1800183 86382298 ~ 86383545 (+)
G1502352 NA other downstream 583678 88769870 ~ 88800640 (+)
G1502370 NA other downstream 620786 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 919979 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1582365 89768557 ~ 89786154 (+)
G1503337 NA other downstream 2035353 90221545 ~ 90223659 (+)

Expression


Co-expression Network