LOC110493296 (mcm2)


Basic Information

Item Value
gene id LOC110493296
gene name mcm2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88186354 ~ 88200745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950923.1
GACCAATCATAATACTGAGTTTGGTTTTCAACGTACATATTCATGAGGTTTCGCGCGCTTTCCATACCACGTGAAGATTTCGCGGGAAAAGTCAGTGGTCAGAAAAAAAACACTTGCGTAGAAGCAGCGGAGACAAGCCGGCGATACACAATGGCGGATTCATCTGAGTCATCTCACATGGCGATCAGCCCCAGCCATGGTTCCAGACGGGGAGACCAGACCTCCAGCCCAGGGAGAGACCTGCCCCCCTTCGAGGACGAGTCCGAGGGGCTCCTGGGTGATGGTCCTCtgccaggggaggaggaggagggagatggggaggaacTGATCGGAGATGCGATGGAGAGgGACTACCGAGCCATCCCTGAGCTAGACAGGTATGAGGAGGAGGGTCTGGATCTTGACGAGGAGCTGTCGGAGCTGTCTCCTGGAGCCAGGGCTGCTGCTGAGGACGCCAtgaggagaagagacagggagCAGGGAGGCAGGCTGAGGAGAGGTCTACTTTATGACAGTGAGGATGAGGATGAGCGTCCGGCTCGGAGGCGTCGCCTGGCTGAGCGGGCTGCAGATGGGTccggggtggagggagaggatgaggagatgatTGAGAGCATTGAGAACCTGGAGGACATGAagGGTCACTCAGTCAGGGAGTGGGTGGTCATGGCCGCTCCTCGTCTGGAGATATACCACCGTTTTAAGAACTTCCTGCGCACCCACGTGGATGAGAATGGCCACAATGTGTTCAAGGAGAAGATCACCGACATGTGTAAAGAGAACAAGGAGAGTCTGGTGGTGAACTACGAGGACCTAGCGGCCAGGGAGCATGTCCTGGCCTACTTCCTGCCCGAGGCGCCTACTGAGATGCTGAAAATATTTGACGAGGCAGCCAAGGAAGTAGTCCTGGCCATGTACCCCAAATACGACCGCATCGCTCAGGAGATCCACGTCAGGATCTGCAACCTGCCCCTCGTCGAGGAGCTGAGATCCCTCAGACAACTCCACCTGAACCAGTTGATCCGTACCAGTGGAGTGGTGACCTGCTGTACAGGTGTTCTACCTCAGCTGGGAATGGTCAAGTACAACTGTAACAAGTGTAACTTCATCCTGGGGCCCTTCTTACAGTCCCAGAACCAGGAAGTGAAGCCAGGGTCTTGCCCTGAGTGCCAGTCCTTTGGCCCTTTTGACATCAACATGGAGTTGACTGTGTACCAGAACTACCAGCGAATCACCATCCAGGAGAGCCCTGGGAAGATCGCCGCTGGCCGCCTCCCACGCTCCAAAGATGCCATCCTGTTGGCTGACCTGGTGGACCAATGCAAACCTGGAGACGAAATAGAACTGACGGGcatctacaacaacaactacgACGGCTCTCTGAACACGGCCAACGGCTTCCCAGTGTTCGCTACGGTCATCATGGCCAATCACATCGCTCGGAGAGACAACAAAGTGGCCGTGGCCGAGCTCACTGACGAGGACGTCAAGGCCATCGTGGCGCTGTCTAAGGACGAGCGCATCGGGGAGAGGATCTTTGCCAGTATCGGCCCCTCCATCTACGGCCACGAGGACATCAAGAGAGGCCTGGCTCTGGCTCTGTTTGGTGGAGAGCCCAAGAATCCAGGTGGGAAACACAAGGTTCGTGGGGACCTTAACGTGCTCCTGTGCGGTGACCCCGGTACGGCCAAGTCCCAGTTCTTGAAGTACGTTGAGAAGGTGGCCAGCAGAGCGGTGTTCACCACAGGCCAGGGAGCCTCCGCTGTGGGCCTGACCGCCTACGTACAGAGACACCCGGTCACCAGGGAGTGGACCCTGGAGGCTGGAGCCCTGGTGTTAGCAGACAGAGGAGTCTGTCTCATCGACGAGTTTGATAAGATGAACGATGCAGACAGAACCAGTATCCATGAGGCCATGGAACAACAGAGCATCTCCATCTCCAAGGCTGGCATCGTCACCTCGCTCCAGGCACGCTGTACTATCATCGCTGCTGCCAACCCTATCGGTGGTCGCTACGACCCGTCTCTGACCTTCTCTGAGAACGTGGATCTGACTGAGCCTATCGTGTCTCGTTTTGACATCCTGTGTGTGGTCAGAGATACTGTGGATCCAGTGCAGGATGAGATGCTGGCTCGTTTCGTGGTGGGCAGCCACATTAagcatcaccccagcaacaaggAAGCTGGCATGGCTGGCTTGGAGGAAGTGGTTCTGCCCAACACCACAGACGTGCCTCCTATCCCCCAGGAGCTGCTGAGGAAATACATCATGTACTCCAAGGAAAGAGTGCGGCCCAAACTCAACCAGATGGACCAGGATAAAGTGGCTTGTATCTACAGCGACCTGCGCAAAGAGTCCATGGCGACAGGCAGCATCCCCATCACGGTGCGTCACATCGAGTCTATGATCCGCATGGCGGAAGCCCACGCCAGGATGCACCTCCGAGACTACGTAGTGGAGGATGATGTCAACATGGCCATCAGAGTCATGCTGGAGAGCTTCATCGACACTCAGAAGTTCAGCGTCATGAGGAGCATGAGGAAGACGTTTGCCCGTTACCTGGCGTTCAGACGAGACAACAATGAGTTGCTGCTGTTCATCCTGAAGCAGCTGGTGTCAGAGCAGGTGGCGTATCAGAGGAACCGGTACGGAGCACAGCAGGACACCATCGAGATCCCAGAGAAAGACCTGGTGGACAAGGCCAGACAGATCAGCATCCACAACCTGTCAGTGTTCTATGACAGCGACGCGTTCCGATCCAACAAGTTCTCTCACGACACGAAGAAGAAGCTGATCCTGCAGCAGTTTTAAATCTGTTtcctgggtaaaaaaaaaaaaagactagcCTCTGTCTGTGTTCTAAATTCACCCTTTCCATATGTAGGGTACTACTTTTgaatagggcccataggggtGTGATTTATTTTTCGGGGGACACAGCCTGTCTGGATGTGTAAATAGTTGTAAATGTTTGTCATCCTGTTGTTGGTTAAAAGAAGAATCCTAATAGGGAACAAAATGGCCCAATTTTAATGCGATCAATGTTACAATTTGTATCTGTTAATGTACCAAGTTTTGTGAACGTAGCCTATATACCTTCATTCCAAACTACTTTCTACTTTTACATTTTGGAACACAGCTTGTGTGTTTTTTGTAACTGACTTTTTGACGTGCAACTGAGTATTAATGTCTTATTTTTATTAGATAATCTGATTTCAGGTCAGATGATCTTCTTGACACTGAAATATGATGTAATATTATTTTCTTCTGGACCAATGACTTTCTGATGACCTTCATGACTTCCTGTTCTGGTCTGTGACTAGAATTCTGTGATAATGTTTTGGTAATAAATGTCATTTGTTGAA

Function

symbol description
mcm2 Enables chromatin binding activity. Acts upstream of or within regulation of cilium assembly; retina development in camera-type eye; and thymus development. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural rod; midbrain neural rod; optic vesicle; paraxial mesoderm; and thymus. Human ortholog(s) of this gene implicated in Alzheimer's disease and autosomal dominant nonsyndromic deafness 70. Orthologous to human MCM2 (minichromosome maintenance complex component 2).

NR:

description
DNA replication licensing factor MCM2

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02540 MCM2; DNA replication licensing factor MCM2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950923.1 True 3365 mRNA 0.52 16 88186354 88200745

Neighbor

gene id symbol gene type direction distance location
LOC110494814 LOC106566185 coding upstream 162 88183728 ~ 88186192 (+)
LOC110494816 LOC106566192 coding upstream 42880 88089634 ~ 88143474 (+)
LOC110494817 LOC100136539 coding upstream 106398 88074395 ~ 88079956 (+)
LOC110493298 LOC106566194 coding upstream 112416 88035364 ~ 88073938 (+)
LOC118940111 NA coding upstream 156552 88027596 ~ 88031324 (+)
LOC110493295 LOC106566198 coding downstream 3152 88203897 ~ 88233393 (+)
LOC110493294 LOC106566182 coding downstream 171333 88372078 ~ 88421226 (+)
LOC118940509 NA coding downstream 233603 88434348 ~ 88435516 (+)
LOC118940508 NA coding downstream 235201 88435946 ~ 88436832 (+)
LOC118940163 NA coding downstream 406023 88606768 ~ 88617815 (+)
G1501543 NA non-coding upstream 83996 88098881 ~ 88102358 (+)
G1501536 NA non-coding upstream 102653 88083490 ~ 88083701 (+)
G1501527 NA non-coding upstream 131714 88054209 ~ 88054640 (+)
G1501600 NA non-coding downstream 22269 88223014 ~ 88223747 (+)
G1501604 LOC101154678 non-coding downstream 47132 88247877 ~ 88248186 (+)
G1501611 NA non-coding downstream 60423 88261168 ~ 88261471 (+)
G1501585 NA non-coding downstream 83224 88283969 ~ 88292911 (+)
LOC110494789 bloc1s1 other upstream 699464 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1017347 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1659324 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1802809 86382298 ~ 86383545 (+)
G1502352 NA other downstream 569125 88769870 ~ 88800640 (+)
G1502370 NA other downstream 606233 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 905426 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1567812 89768557 ~ 89786154 (+)
G1503337 NA other downstream 2020800 90221545 ~ 90223659 (+)

Expression


Co-expression Network