LOC110493295 (LOC106566198)


Basic Information

Item Value
gene id LOC110493295
gene name LOC106566198
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 88203897 ~ 88233393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950925.1
GTCCGACTTGCACACTCGTTGAAGAAATGGTGCCGGAGTTTCCCATTTGGAAAATATCAGAATAGACCAATAACGTACATACATTTTTAACTCGGAGATACCGAGTTTCCGAGTTGTATTGAAAGCACCATAGTGGCAGCATCTATCAGTGCGAGCctgtctccacacacacataGCGCTGAGAGAGACGCAGATAATCGTGAACCGGAGCATCCAAATTCAGACCCTTATCACGGTTAGCGTTTTTCTTAACCAGCCAGTATGCGATGAGGTGCGTTCTCTCCGCCCGCTACAGCTGAAAAACAACGAGCAACAATAGTTCTAAATAGTGTGGAATTGTTTTCGCTGCAGTCATGGTAGGCCTGCTTCGCCCGCTTTTATTCGgcTCCACACTATTTTTCCTACTGTCATGTGATGCCCTGCTGAGTGATGGGATGGGACCACCCACCTTGCTGTCCACCTCCcagccctctcctctgtccctcatGGACCAAGATGTGGAGGAGCAGCCGGAGAGGATGACCGTTCCAGGCAGCCCCACCACAGTACCAGGCCTAACCTCCCAGGGACAGGAGTCCTCGGGGTTATTCAATGACGACAACAAGCCTCTGCAGTCCTCTGTTCATCTCTGGGATGATGTCAGAGACCAAGTCAACATCACTGGTCTAGACAGGAAGTCCCTCAGAGGTTACAGTCAGACCCTCTCCCAGACCTCCACCTCTCCTATGGAGGAACCCAGACAGGGTAATCACACCTCTCCCTTCAAGGATGCGGTGGAGAGGCAGGAGCGGGAGctatgggagatggagagagagtccAGCGGCCTCCCCCTGGAGGCTGGCTACGGCCAGAACCAGAGCATGCCTACCACCACCTCCAACACCACCACATCCAACACCACCACATCCAACACCACCACATCCAACACCACCACATCCAACACCCCCACCTCCAACACCCCCACCTCCAACACCACCAcatccaacaccaccaccaccccaaccTCCAACACCCCCACAACCCCTGCTGCTGACCCTCTGGTTCCTGTAGACTCAACCACCTTAGACCCACAATACGTCCCAGTGTACGGGGGTTCTCAATCAACTCCTGAAGACACAGTGGAGGTAGACGTagcagatgaggaggaggaggaggaggaggagagggagagttccACCCCTGAGCCTGATGCCTCCACCTCCAGACCAACCCTCCCAGAGGTAGGTGTCTTCCCCAGCCTTGGGCCTCTCCAGTCGGACAACACCCATACAGaagaccaggaggaggaggaggaagaggaagaggaggcagtGGTCCTTGGAAGACCTAGGAGTGAATCGggaagagcagggagaggaggtgaCATCTCTCCCCTGACCACAGCCCCCTTGGCGTCTCTGGCGCCAACGGTCGATGTCACGGAGGATTCAGCGCTCCGTCTGGAGGACGAGGAGATGTTCGCTGGGAAGGAGAtccaggagaaggagaggaggcaggaggaggaaaagaagcatgatgaggaggagcaggaggtcAGGCATGGAGGAAAAGAGCTGTTAACGGAGGCAGAGCTCCTCCGTGGTGCACACTTCTCACAGGAGATACAGCAGGTGATCTGTGTGGACTGGAGCGATCTGGCTGGGAAGGGGTACGTCATCCTCAACATGTCAGACAACGTTGACTGTgATGAGTTCCGTGTGGAGAGTGGAGACCGCCTCTTGGAGCTGCTAGAGACAACCTTCTCTAGGAAGATGAACAGTCCTCAGGGCTCCtggctcatctctctctctaaacccacCAGACAGGACCACCAGCTGCTCGTCACGCTGGCCAACGAACACGGAGTTATTGCCACCAAGGATATGTTGTCAATGTTAGGCGAAATCAGGAGAGGTTTGCACGAGATTGGTATCCAGAACTACAGCAGCGCTAACACCTGTCACTCCAGGCCCAGTCAGACTCGTAGTGACTACGGGAAGCTGTTCGTGGTCCTGGTGATCATAGGTTCTGTCTGTGTGGTCATCATCGCGTCTGGTCTCATCTATATCTTCTGGCAGAGACGCCTGCCTAAGATCAAGACTATGACTCGAGGCGAGGAATTCCATTTTGTGGAGAACGGCTGCCATGACAACCCTACCCTGGATGTGACGAGTGACGGGGGGGGGCAGCCAGAGATACAGGAGAAGAAACATCGCCACGCCAACGGACTGACGGCTGGgtctgggggggagggagggagtagtggCTGGCAGGTCCTGGTCAACAAACCTGGAGTGAAGGAAGAGGATAATATGGAAGAGGATACACACCTTtagtagagagaagaagagtggaAGAGGATAATATGGAAGAGGATACACACCTTtagtagagagaagaagagtggaAGAGGATACTATAGAAGAGGATACACACCTTtagtagagagaagaagagtggaAGAGGATAATATGGAAGAGGATACACACCTTtagtagagagaagaagagtggaagaggagaaggtAGCCTGgatccagatctgtttgtgctgtcttgccaacttctATGGTCACTGTCACATTTGGcgtggcaagacagcacaaacagacctgggagtCGGACTAGGCTAGAAAAGAGAACTCAAGATGAAGACGCAAAACATCAGTGTTGTGAAACTTGTGAATGCATCGGCTGTCAAATTATacagagcaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaagatcccagaaatgtgccatatgcacaaaaagcttattttccttaaattttgtgcacaaatttgtttatagtctagtgagcatttctcctttgacaaagtaatccatccacctgacaggtgtggcatatcaagaagctgattaaacagcattaaaTCAGCATTagatcattaaacaggtgcagcttgtgctggggacaataaaatgccactctaaaccagagctcttgccagagaattgaatgttcatttctctaccataagccaccgtcaacgtcgttttagagaatttgtcagaatgtccaatcggcctcacaaccgcagaccgtgtgtaaccacgccagcccaggacttccacatctggcttcttcacctgcgggatcgtctgagaccagcctccccggacagctgatgaaactgaggactatttctgtctgtaataaagcccttttgtgaggaaaaactcaATCTTTTTGGCTGGGCCTTGCtccccatggctgcgcccctgcccagtcatgtgaaatccatagattagggtctaacgaattaatttcaattgaccgatttccttatatgaacttgtaactcagtaaaatcgttgaaattgttgcatgttgcatttatatatatatatattttttgtgttcAGTACAGAAAGACAAAGTATAGTAATCAGAAGTCACTTAAACAACTTTATTAAAGCTACTTAGACGTTTTATCAATTGGCTATGATTATATGATATGGTCTTGATCATCTACTCtgctttcctttttttttttgtcaactaAGCATGATTCGCATCTATTACTTAACACTGTACAGCGACAGGGACTTTTCAGAATGAGGAAACATTGATGTTGAAGCGAATAGAGACGTTATCCCTCTGTTACGTGTATAAATGTTCGTAGTTGAACTACTGAAGTTATTAGAAATATTGCATTTAGTTTAACATGTTTGAATGCAGAGTTAAACGCTTTGTGCTCTTCTTTTATTACGTAAAGTTGGAATGCCATCTCTGTATCTGATCTGTTCACACTGATCGTAGTTCAAAGCCACACGATCATTTGGAAGCATCCGTTATACCCAGCCTCCTTACAATCGAGACTGAGTTTGCCAAATATCTAGCTTGGTTGCCTGATCTGATTGCTTTAGCAAGTCATCTCTGGCTGCTGTGGCACGGTAACAAACAAGGGATTGGCTAAAGCACAATCACCTCTGGTAACCAGGCTGCAAAACAACTGagggctgtcatggtaacaaacAAGGGATTGGCTAAAGCACAATCACCTCTGGTAACCAGGCTGCAAAACAACAGAGGCTGGCCATATTTATGATGCTTCCCTTTGATAACCCCCCCCTACAattttataaatatttatatatatatattaatttatCATAAGCACAGCGAATAATGTTTTTGGCTCTTTACTGTAGAAGGCATGTAAATATGAATGTAATGTCATGCTGCTAGTATTTCTGCTGAGGCCCTGAAGCTAATGACATACTGTGGTTTAAATATATCTTCTCTGCCTTGACAGTATTGTCTCTGCATCAAAATGGTGGgatatgtgtttttgtttttagtCCGCAGTCAGCTATAGAGCTCAGATCTTTTTTTTGAGAGAAATCAATAGCACCAAGATGGTTCACATCTCTCATAGCGTACACTGTGCTTAGCCGAGGAGTGTTAGAAACGCTTAAATCCGTAAATACaagctaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatcatCCCAAAGAATAGTCCAATCTTATATGGTAGTGATAAGCTACTAAACACAGGGGGTTGGTAgcaccttaattgaggaggacGGACTCATAGTAATGGCCTGAAAAGAAGAAATGGAacataaaaaagaaaaaaaacacctgGTGTTTGCCCCCGTTCcgtttactccattccagacattatgagcCGCCCTCCACCTCTGCAATCTCCTGTGGTACTAAACTAACGCTTTAGTTGAGGGATGGATGGGATTGGATGGAGGAATGGctggatgagaggaagagagagtgggatggctgaggggagggaggaatggatgaGAGGGGTGGCTGGAAGGAGAGTGGGATGgctgatgagagggagggagggagggaggaataacATCTcctgttttgttttattttgcgCTAGACAAGCAGATAGCCACAATGTGCTCTTTAaaatctgtatatatatatttttttgttgtgtgttattgacttgttaattatttactccatgtgtaactctgtgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaaaaaaaatctgtattggACAGTTGAACtctcctgggttgtgttcattaggcaacaAACGGAAGAAAACTGACAATCAGGGAAGGACTACTTGGGATCTGGTCCAATAACAAACGTtcgtaaattttttttttttttacattgagttccctaatgaacacgacccaggaaAGTTCAAGAGTAGGCTCTGATGTTCTGGATTGGTGGGTCTGAACTCGGTCTCTTTTGTCATTATTAATGGGAAAAATCTCACTTGAAAatgttttagtccaggactaggcttgtTGGGAAACCAGCCGTAGGTCTGTGTGTGGGCAGCTCCGTAGGTCTGTGTGTGGGCAGCTCCGTCGGTCTGTGTGTGGGCAGTTCCTTGTATTGCTCCTGCGCCATTGTCTCTATCATATGAGCTGCTCAGTGGTGTTAAAATGTCAGGTTTCTCGTATGTCATTTGCATAAGAATTATCCCCAGGTTCCATTGCTAACACCGAGTGAGAGTCGGCTAGAGAGAAGTTTAGAAGTATATGTTATTGATTTTATAAATGTTCATTATTTtgtgtttaacttttttttttaaatttcatgtTAGTTTAAATTTTTCACTGTTTTGTTATGTATCATGTAATGTatggaaaaaaaataaacatttgtgaAATGCTG
>TU1716841
aaacacctgGTGTTTGCCCCCGTTCcgtttactccattccagacattatgagcCGCCCTCCACCTCTGCAATCTCCTGTGGTACTAAACTAACGCTTTAGTTGAGGGATGGATGGGATTGGATGGAGGAATGGctggatgagaggaagagagagtgggatggctgaggggagggaggaatggatgaGAGGGGTGGCTGGAAGGAGAGTGGGATGgctgatgagagggagggagggagggaggaataacATCTcctgttttgttttattttgcgCTAGACAAGCAGATAGCCACAATGTGCTCTTTAaaatctgtatatatatatttttttgttgtgtgttattgacttgttaattatttactccatgtgtaactctgtgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaaaaaaaatctgtattggACAGTTGAACtctcctgggttgtgttcattaggcaacaAACGGAAGAAAACTGACAATCAGGGAAGGACTACTTGGGATCTGGTCCAATAACAAACGTtcgtaaattttttttttttttacattgagttccctaatgaacacgacccaggaaAGTTCAAGAGTAGGCTCTGATGTTCTGGATTGGTGGGTCTGAACTCGGTCTCTTTTGTCATTATTAATGGGAAAAATCTCACTTGAAAatgttttagtccaggactaggcttgtTGGGAAACCAGCCGTAGGTCTGTGTGTGGGCAGCTCCGTAGGTCTGTGTGTGGGCAGCTCCGTCGGTCTGTGTGTGGGCAGTTCCTTGTATTGCTCCTGCGCCATTGTCTCTATCATATGAGCTGCTCAGTGGTGTTAAAATGTCAGGTTTCTCGTATGTCATTTGCATAAGAATTATCCCCAGGTTCCATTGCTAACACCGAGTGAGAGTCGGCTAGAG
>TU1716842
cATCTcctgttttgttttattttgcgCTAGACAAGCAGATAGCCACAATGTGCTCTTTAaaatctgtatatatatatttttttgttgtgtgttattgacttgttaattatttactccatgtgtaactctgtgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaaaaaaaatctgtattggACAGTTGAACtctcctgggttgtgttcattaggcaacaAACGGAAGAAAACTGACAATCAGGGAAGGACTACTTGGGATCTGGTCCAATAACAAACGTtcgtaaattttttttttttttacattgagttccctaatgaacacgacccaggaaAGTTCAAGAGTAGGCTCTGATGTTCTGGATTGGTGGGTCTGAACTCGGTCTCTTTTGTCATTATTAATGGGAAAAATCTCACTTGAAAatgttttagtccaggactaggcttgtTGGGAAACCAGCCGTAGGTCTGTGTGTGGGCAGCTCCGTAGGTCTGTGTGTGGGCAGCTCCGTCGGTCTGTGTGTGGGCAGTTCCTTGTATTGCTCCTGCGCCATTGTCTCTATCATATGAGCTGCTCAGTGGTGTTAAAATGTCAGGTTTCTCGTATGTCATTTGCATAAGAATTATCCCCAGGTTCCATTGCTAACACCGAGTGAGAGTCGGCTAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950925.1 False 5853 mRNA 0.46 9 88203897 88233393
TU1716841 False 985 lncRNA 0.44 1 88232257 88233241
TU1716842 True 738 lncRNA 0.41 1 88232504 88233241

Neighbor

gene id symbol gene type direction distance location
LOC110493296 mcm2 coding upstream 3152 88186354 ~ 88200745 (+)
LOC110494814 LOC106566185 coding upstream 17705 88183728 ~ 88186192 (+)
LOC110494816 LOC106566192 coding upstream 60423 88089634 ~ 88143474 (+)
LOC110494817 LOC100136539 coding upstream 123941 88074395 ~ 88079956 (+)
LOC110493298 LOC106566194 coding upstream 129959 88035364 ~ 88073938 (+)
LOC110493294 LOC106566182 coding downstream 138685 88372078 ~ 88421226 (+)
LOC118940509 NA coding downstream 200955 88434348 ~ 88435516 (+)
LOC118940508 NA coding downstream 202553 88435946 ~ 88436832 (+)
LOC118940163 NA coding downstream 373375 88606768 ~ 88617815 (+)
LOC118940112 NA coding downstream 433652 88667045 ~ 88668051 (+)
G1501538 NA non-coding upstream 16393 88085926 ~ 88187504 (+)
G1501543 NA non-coding upstream 101539 88098881 ~ 88102358 (+)
G1501536 NA non-coding upstream 120196 88083490 ~ 88083701 (+)
G1501527 NA non-coding upstream 149257 88054209 ~ 88054640 (+)
G1501604 LOC101154678 non-coding downstream 14484 88247877 ~ 88248186 (+)
G1501611 NA non-coding downstream 27775 88261168 ~ 88261471 (+)
G1501585 NA non-coding downstream 50576 88283969 ~ 88292911 (+)
G1501647 NA non-coding downstream 102126 88335519 ~ 88336514 (+)
G1501649 NA non-coding downstream 107021 88340414 ~ 88340972 (+)
LOC110494789 bloc1s1 other upstream 717007 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1034890 87168539 ~ 87169007 (+)
G1500170 LOC106566147 other upstream 1676867 86520830 ~ 86527030 (+)
G1500239 NA other upstream 1820352 86382298 ~ 86383545 (+)
G1502352 NA other downstream 536477 88769870 ~ 88800640 (+)
G1502370 NA other downstream 573585 88806978 ~ 88808969 (+)
LOC110493303 LOC106566213 other downstream 872778 89106147 ~ 89150807 (+)
G1503119 NA other downstream 1535164 89768557 ~ 89786154 (+)
G1503337 NA other downstream 1988152 90221545 ~ 90223659 (+)
G1501600 NA non-coding upstream 8510 88223014 ~ 88223747 (+)

Expression


Co-expression Network