LOC110494823 (LOC106566211)


Basic Information

Item Value
gene id LOC110494823
gene name LOC106566211
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 89532719 ~ 89539265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950941.1
ACGTGTTCAATCAGGAAGCGTTGGCAGAATCGGGACATTGCGTGCTCACATTACCGGTTTCAACTCTAGCTGCTCATGTGTAGCTAGCATTTATTTTTCGCTAGACAGGTAGTTTTTGTATCGTAACGTTTAGCTAGGTTACATCTAGCTAAACTAGATTAAGTTAGTTATTAATTGTAAAATGTTGTGTTTGACTAGTTTGTCGGTCGCCCTCGCAGCGCTGGCTCTGGTACCGAGCATTAGCGACGCTTTGAAAGATGGGGATTGTGAAGTGTGTGTGAGCTTCCTGGGAAGGTTCTATCAGTCATTGCAAGACAACAACGTTAAATTCACCAGCGCAGACATCGAGAAGGCCCTCGTCAAAACCTGCAAAGATGCCAAGGGCAAGGAAAACCGCTTTTGTTACTACATTGGTGGAacacatgacgctgccaccaaaATCCTCAACGAGATCTCCAAGCCCCTGAGCTACCACACGCCGGTGGACAAGATCTGTGAGAAACTAAAGAAGAAGGACAGTCAGATCTGTGAACTGAAGTACGacaAACAGCTGGACCTGAGCACCGTGGATCTGAAGAAGCTGAAGGTGAAGGAATTGAAGAAGATCCTGGAGGTGTGGGGAGAGTCGTGTAAAGGTTGCGCCGAGAAGTCTGACTTCATCCGTAAGATCAATGAACTCATGCCCAAGTACGCCCCCAACGCAGCTAAAGCACGGCGGGAACTGTAaccagagggagaaggagggatgcAGACCTGGGATTGTATTCAGTGTCTCAAAGTAGaaattctgatctaggatcagttttgcctttttttttcttacattttttgttgttgttgttgatcataAGGAATAAGAGTCTGCATCAAGCATCTCGATTAGGAGTGTTGATTTTaggatcagccccccccccccctcccccctgtccTTTCCGCCATTTTATTATTTGTGATCTAAATGCCAAATctaatcctagatcagctctccaACTCTGAGACAGTTTGGCTTgaatacaaaaaaaaatgcaccctagtccctatacagtgcacttcctttgaccagagccctgtgggggagtatggtaccatttgggatgttaCCTTTGTTAATACAGGCCCTGTGGGGGGAAGGGTGCTCTGGGTGTCCTGAGAGGGTATTTTGTGGTGGGTAATGTTCGCTGTGCGGCATATGGACCACCTGTCAGTCTCTACATgaccttcatttttttttttacattttttgtaagggatatattttgtttgttttttttgtcttaattaATAACGGTATAATCCAATATAACAGGTGTCGACAAGCTCGTATGCAGAAGGTCCTAGACAGTGGGTGTAGTAAGACACCTGATTCTACCGACCTACTAATCATCAAATCGAGACCTTGATTTGTACCCTCTACAAATAAGCTTGGCCACccctgaaatatatatatatatatatatatatatatatctttttttaaatttttttttaaagagaagaTAAAACTATTGAAATTGACTTTTCTTTCACACAACCGTACATGTTTATTACAAATGTTCTGTACTTTTTTCATTAAAATACGAAAACAAGG
>TU1718351
ATCGGGACATTGCGTGCTCACATTACCGGTTTCAACTCTAGCTGCTCATGTGTAGCTAGCATTTATTTTTCGCTAGACAGGTAGTTTTTGTATCGTAACGTTTAGCTAGGTTACATCTAGCTAAACTAGATTAAGTTAGTTATTAATTGTAAAATGTTGTGTTTGACTAGTTTGTCGGTCGCCCTCGCAGCGCTGGCTCTGGTACCGAGCATTAGCGACGCTTTGAAAGATGGGGATTGTGAAGTGTGTGTGAGCTTCCTGGGAAGGTTCTATCAGTCATTGCAAGACAACAACGTTAAATTCACCAGCGCAGACATCGAGAAGGCCCTCGTCAAAACCTGCAAAGATGCCAAGGGCAAGGAAAACCGCTTTGTAAGTGATTTTTAGGCTGTTTTAGTTTAATGCAAGTCTAGTCGATAAGTAGTTACATATAACATAATCCTATCCAGATTATCCACTGAATTTgttgatttacagtgccttgcgaaagtattcgaccccttgaactttgcgaccttttgccaaatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggattggatcaaactttcttaacaaatcaaaaactgaaaaattgggcgttttatatctttgtttgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaattgctgTCATTTTTCGTCCTTCTGTGTACCCTTAGTGTTACTACATTGGTGGAacacatgacgctgccaccaaaATCCTCAACGAGATCTCCAAGCCCCTGAGCTACCACACGCCGGTGGACAAGATCTGTGAGAAACTAAAGAAGAAGGACAGTCAGATCTGTGAACTGAAGTACGacaAACAGCTGGACCTGAGCACCGTGGATCTGAAGAAGCTGAAGGTGAAGGAATTGAAGAAGATCCTGGAGGTGTGGGGAGAGTCGTGTAAAGGTTGCGCCGAGAAGTCTGACTTCATCCGTAAGATCAATGAACTCATGCCCAAGTACGCCCCCAACGCAGCTAAAGCACGGCGGGAACTGTAaccagagggagaaggagggatgcAGACCTGGGATTGTATTCAGTGTCTCAAAGTAGaaattctgatctaggatcagttttgcctttttttttcttacattttttgttgttgttgttgatcataAGGAATAAGAGTCTGCATCAAGCATCTCGATTAGGAGTGTTGATTTTaggatcagccccccccccccctcccccctgtccTTTCCGCCATTTTATTATTTGTGATCTAAATGCCAAATctaatcctagatcagctctccaACTCTGAGACAGTTTGGCTTgaatacaaaaaaaaatgcaccctagtccctatacagtgcacttcctttgaccagagccctgtgggggagtatggtaccatttgggatgttaCCTTTGTTAATACAGGCCCTGTGGGGGGAAGGGTGCTCTGGGTGTCCTGAGAGGGTATTTTGTGGTGGGTAATGTTCGCTGTGCGGCATATGGACCACCTGTCAGTCTCTACATgaccttcatttttttttttacattttttgtaagggatatattttgtttgttttttttgtcttaattaATAACGGTATAATCCAATATAACAGGTGTCGACAAGCTCGTATGCAGAAGGTCCTAGACAGTGGGTGTAGTAAGACACCTGATTCTACCGACCTACTAATCATCAAATCGAGACCTTGATTTGTACCCTCTACAAATAAGCTTGGCCACccc

Function

NR:

description
mesencephalic astrocyte-derived neurotrophic factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950941.1 False 1588 mRNA 0.43 4 89532719 89539265
TU1718351 True 1812 lncRNA 0.43 3 89532747 89539110
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493302 LOC106583746 coding upstream 10324 89162750 ~ 89524314 (+)
LOC110493303 LOC106566213 coding upstream 381912 89106147 ~ 89150807 (+)
LOC110494825 LOC106566214 coding upstream 430328 88965847 ~ 89103615 (+)
ssuh2.1 LOC106566200 coding upstream 567081 88912896 ~ 88965638 (+)
cand2 LOC106566202 coding upstream 635210 88877784 ~ 88897509 (+)
LOC110494822 LOC106566210 coding downstream 895 89540160 ~ 89543408 (+)
LOC110494819 LOC106565061 coding downstream 610417 90149682 ~ 90248746 (+)
LOC118940511 NA coding downstream 1039079 90578344 ~ 90587307 (+)
LOC110493305 LOC106566226 coding downstream 1945360 91484625 ~ 91522092 (+)
LOC110494826 LOC106601490 coding downstream 2314074 91837358 ~ 91867163 (+)
G1502998 NA non-coding upstream 25944 89505382 ~ 89506775 (+)
G1502980 NA non-coding upstream 60769 89471406 ~ 89471950 (+)
G1502956 NA non-coding upstream 71925 89397344 ~ 89460794 (+)
G1502968 NA non-coding upstream 90869 89441366 ~ 89441850 (+)
G1503029 NA non-coding downstream 59994 89599259 ~ 89599575 (+)
G1503034 NA non-coding downstream 67195 89606460 ~ 89607204 (+)
G1503053 NA non-coding downstream 112835 89652100 ~ 89655991 (+)
G1503086 NA non-coding downstream 171379 89710644 ~ 89711101 (+)
G1503090 NA non-coding downstream 176455 89715720 ~ 89716306 (+)
G1502370 NA other upstream 723750 88806978 ~ 88808969 (+)
G1502352 NA other upstream 732079 88769870 ~ 88800640 (+)
LOC110494816 LOC106566192 other upstream 1407845 88089634 ~ 88143474 (+)
LOC110494789 bloc1s1 other upstream 2045829 87415720 ~ 87486890 (+)
G1503119 NA other downstream 229292 89768557 ~ 89786154 (+)
G1503337 NA other downstream 682280 90221545 ~ 90223659 (+)
LOC110504503 LOC106566236 other downstream 2745790 92282926 ~ 92317484 (+)
G1505894 NA other downstream 2780280 92319545 ~ 92320777 (+)
G1505924 LOC106566233 other downstream 2909321 92447734 ~ 92467632 (+)

Expression

LOC110494823(LOC106566211) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

LOC110494823(LOC106566211) Expression in each Bioproject

Bar chart with 21 bars.
LOC110494823(LOC106566211) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network