LOC110494822 (LOC106566210)


Basic Information

Item Value
gene id LOC110494822
gene name LOC106566210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 89540160 ~ 89543408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570151.2
TCATTTCCATAGCAGATATTATACATTTGCAAGACTTTGGGTGAGCAGTATCTGCTTCCGCATGACGTCCCTAGCCCTGCGGCTACGTCGCCTCAAACCCCTCCCATTGGCGGAACGTATACATTCCTTTTGTCCAAGATGGCGGAGTTGAAACAGGTTCACTGATTCTAAATATGTTTTTAAACGCGTTTATCCTTTTTACATTTTATATCGGAATACATGCAAAGTCTTTAACGTCGCGAACATTAGTTACAAGTTATTAACGTCCGTTTATGTGTAACGTCTCCCAAAAGTGAGGAATTTGCTTACAGATCGGATTTTTTTTTCTGCAGACactggctggctagttagcaacAAAAAAAGTTTGGGCATCGTTTGAAAATGAAGCGACAAGCCGGGAGGGACTCCAGTCCTAGTAGGTCTTTAGCGAAACGAATACGGGAAAGAGAGCGGGACCGGGACGGGGCACGGAGAGAGGACCTGCCGCTCCCACCACTTGCTTTGCTGCTCGCTGAAAGCGGGAGGCAACATGCTCGGAGTAGGAGCAGGGAACGAGAAAAGACACGGCTTCGGGAGGAGCGTGGAGGCACCGGAGATCCCCTCCACCACCGACAACAACACCACGACCTCGATCTCATCGGCCGACCCTCTCTCCGGACTACAGCCGTCCTGCCTAAAGGCAAAGTGGCACCCGAACTACTGGGCCTCCGGGGGGGAGCCGGTGGGACTCTGGAATACAAATCGTTGCTCATTAGCAATCTCGGCTCGGTGCTTTCTGACGAGCACGTTGAAGACGGACTGTTTCACGAGTTTAAAAAGTTTGGTGACGTTAGTGTGAAACTATCTCACACTCCAGAACTAGGCCGAGTCGCCTACATCAATTTCCGGCACCCGGAGGACGCTAAAGAGGCCAGGCATGCCAAAACCAGGCTAGTACTCTATGACCGCCCTCTCAAAGTAGAGCCCATGTACGTCCGGCGGCGCAGCTGCACGCCGCCGGATATGGGCTATGTCCCCATCCATGGCGCCCCATATTCCTCTTATAGACAGAGgtccctctccccctgccctggAGTTAGTAGTATCAGAGATATCCGACCACCAAGACATTACCATGTAGAGGGACTGGGactgagcagagagagggagaggatcttaGATTACTATGGGATGTTAGACGAGAGGGGAAGGCCTTACGGGCTGCCTGTACCTGAGCATGATGACATAAAACCTGAGGACGACGCGAGGGCGTGCAGGAACCTGTTCATCGGCAACCTGGATCACAACGTCACCGAGGGCGAGCTGAGGAGAGGCTTCGATAAGTACGGCATCATTGAGGAAGTTGTGATTAAACGACCGGCACGCGGTCAGGGTGGAGCCTACGCTTTCCTCAAGTTCCAGAACTTAGACATGGCTCACCGGGCTAAGATAACCATGCAGGGTCGCGTGATTGGCGGGAACCCGGTGAAGATAGGCTACGGTAAGGCCAACCCTACCACCAGACTCTGGGTAGGCGGGCTGGGACCCAGCAATTCCCTGGCAGCCCTGGCCAGAGAGTTTGACCGTTTTGGCAGCATCCGGAACATACACTATGCAAAAGGGGATAGTTTTGCCTACATTCAGTATGAGAGCCTAGATGCCTCTCAGGCTGCATGCACTCAGATGAGAGGGTTCCCTCTGGGAGGCCCAGAGAGGAGGCTGAGGGTGGACTTTGCCAAGGCTGAGGAGCCCCTGCCACGTAGTTACCCAACAGGATACCAGCCCCCTGTGTCCCAGCCTGCCCACCTGGACCTGCTGAGGCATCGCGACCGTAGCCTGGAGAGAGAGCTACGCTCCCGGGACCGCTCGCCCCCCTCCCACGCCCTGTTCAcccagcgggagagagagagagctatgctGGACAGGGGGGACAGAGAGTTCATCTCTCCAACAAATAGCCTTGAGCGCAGGGGGAGTGAAGCGTTTGGGGTGTCTCGTGGTGGCCGAGGGGACCGGGCAGCCCGGAGCCGAAGCAGAGAGCGctggctgaaggagagagacgcAGAGCGGGCTGGGGCGGAGAGACGCAGACACAGGTCCCTTTCCCTTGATGGACCCTctcaggaggagaaggagagaggcatgtccaaggtgagaggaggagcagggcCAGCTTCTCCAGAAGACAGCCCAGACAGAGCCAGGGTCCGGGCCCCAGACTCTACCACCGAGCCCAGGGGACAGAGCCCCGACAGCAGCCGCCACTCCAACGAGGACCGGGCCGGCCTGGACGGCCACGAGACATCCTCCAGCCGTGACCGACACAAGAAGACTGgcggggacagagagaaggaccgTGACCGCAACCACCGTGCCAGCTACACAAACCACACCTCAGACACACTCAATAAAGACCCCAGAACACCCAGTACGCTGTCGGAGTGTGTCACCACCCTCACCAAAGCCTGGCACGGTCACTTCACCCTGAAGAACTCCTGTTTCCCCACTAACATGCACCTGTTAGAGGGAGGCTCCGGGTTCTTCCACTCTGTCATGAAGGACCACCAGGCCAAGGGTAAACTGACCCAGCTGAAGATCGCCCAGCGACTGAGGATGGACAAGACCAGGTTGAACGAGGTCACCAGGAGGATCAAGCATGGTGGCTCCGAGGGCTACGCTGTTCTCCTGGCCCTCCAGGGCCCCATCGACCGCGAGGCCCCTCCACCTGAACCAGGCCTACAGATCAGACTCCTCCGTCACCTGGTCACCTACCTGAGGAACAAGGAGGCTGCAGGAGTGATCAGTCTACCTGTAGGTGGGGctaaggagggaggaaaggggggcaTGCTGTACGCCTTCCCCCCATGTGACTTCTCCCAGCAGTTCCTCCAGAGTGCACACAGGACTTTGGGGAATCTGGATGAAGAGCACCTGGTGGTTGTTATTGTCAATGACTCTGCCTAACTTAGACAGAAGACACCTCTTTGTGGTGTTGGCTGTCAATGTTATTACACCCACGTTAACACCCACGTTAACAGACAGCTGTCAGTAAGGGCTGGGAATTTCCAGAGACCTCAtcatacttaggtgccgatacgatatgtattgtgattctcacgattctatttGTAATGTGATTCTCAAGATTCTAtttgtgattctcacgattctatttgtgattctcacgattctatttGTGATTCTCACggttctatatgtattgtgattctcacgattctatttgtaattgtgattctcacgattctattt

Function

NR:

description
putative RNA-binding protein 15B

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570151.2 True 3249 mRNA 0.55 1 89540160 89543408

Neighbor

gene id symbol gene type direction distance location
LOC110494823 LOC106566211 coding upstream 895 89532719 ~ 89539265 (+)
LOC110493302 LOC106583746 coding upstream 17765 89162750 ~ 89524314 (+)
LOC110493303 LOC106566213 coding upstream 389353 89106147 ~ 89150807 (+)
LOC110494825 LOC106566214 coding upstream 437769 88965847 ~ 89103615 (+)
ssuh2.1 LOC106566200 coding upstream 574522 88912896 ~ 88965638 (+)
LOC110494819 LOC106565061 coding downstream 606274 90149682 ~ 90248746 (+)
LOC118940511 NA coding downstream 1034936 90578344 ~ 90587307 (+)
LOC110493305 LOC106566226 coding downstream 1941217 91484625 ~ 91522092 (+)
LOC110494826 LOC106601490 coding downstream 2309931 91837358 ~ 91867163 (+)
LOC110519238 vgll4 coding downstream 2371994 91915402 ~ 92011967 (+)
G1502998 NA non-coding upstream 33385 89505382 ~ 89506775 (+)
G1502980 NA non-coding upstream 68210 89471406 ~ 89471950 (+)
G1502956 NA non-coding upstream 79366 89397344 ~ 89460794 (+)
G1503029 NA non-coding downstream 55851 89599259 ~ 89599575 (+)
G1503034 NA non-coding downstream 63052 89606460 ~ 89607204 (+)
G1503053 NA non-coding downstream 108692 89652100 ~ 89655991 (+)
G1503086 NA non-coding downstream 167236 89710644 ~ 89711101 (+)
G1503090 NA non-coding downstream 172312 89715720 ~ 89716306 (+)
G1502370 NA other upstream 731191 88806978 ~ 88808969 (+)
G1502352 NA other upstream 739520 88769870 ~ 88800640 (+)
LOC110494816 LOC106566192 other upstream 1415286 88089634 ~ 88143474 (+)
LOC110494789 bloc1s1 other upstream 2053270 87415720 ~ 87486890 (+)
G1503119 NA other downstream 225149 89768557 ~ 89786154 (+)
G1503337 NA other downstream 678137 90221545 ~ 90223659 (+)
LOC110504503 LOC106566236 other downstream 2741647 92282926 ~ 92317484 (+)
G1505894 NA other downstream 2776137 92319545 ~ 92320777 (+)
G1505924 LOC106566233 other downstream 2905178 92447734 ~ 92467632 (+)

Expression


Co-expression Network