LOC110493305 (LOC106566226)


Basic Information

Item Value
gene id LOC110493305
gene name LOC106566226
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 91484625 ~ 91522092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950953.1
agagcagtCAAACTTCACAGGGAATGGGGTGGAAAGCGGGAGGGACGGACTCAAACGCAGGAAGGATtaaatgagagagcgagagatagtgagagagagcaagagagagagagagagtgaaagacggCAAGAGAGACAGcgtgagagaaagagcgagagagagagagagctagagagagagagagagagagctagagagagagagagagagagatagtgagagagctagagagagagagtcagatgcGTAGTGTAGCGTTGGGATAGGACCAGAAGAAGCTCCACACGCGACTCAACGCAGAGCAGCCACACAGAGACGAAGTCACAACCCTCCATCACACTCTTCTCACTGGATACTACAGCAACCTGTCCTATCATAGATGTCTCACTGGATACTACAGCAACCTGTCCTATCATAGATGTCTCACTGGATACTACAGCAACCTGTCCTATCATAGATGCTTCACTGCATACTACAGCATATCATCATCCTAAACTGTAGCATACTACAGACAACCTGAGCAGAGGAAAATACTCAACTAGTTTTACAACTTTTCTTTTGGACACCGGTGTCTCAGATGAAATCCCCTGACGATGGAGTCGATTATTAATTAAGTTTATTCCCACAGAGTGTGCCGCTTATATTTTCTAAAGACTCCTCCCTGTGTGATCGGAGGAGAAGACGGGAGGACGGAAGATTCTTGAGGTTTTGGTTTGTAGGTTACCAGCCTACTATCAAGGAGAATGAGTATTTTTTCTATAATGGATACTGGGCTCCCGAGGAGGGTGTTTCTATAAATAATTATTGGGCTTCGTTTCGATAAATCATCCGTCAGCTCAAGGAGAGAGAAGATTGTTTTGTattgaccgagagagagagagagagagaggggtgagtgaaACCTGAACTGCCTGTCTGTGCAGCTGGCTATATGAATGTGTTAAGTGGGCTGGACAGAATGCTGACTTTTTTTTTTCCAAACCCATCCCTCGTTCTCTCTGTGCCCGTACTATCAGTCGCAGGCAGCTGGGTTAGTGACTTGTCTGACTGGATAAAAGGACATTAGATTATAACGTAAAgaaaaaggagaggagacggCAGTGGACTACGGCTTCCCCAGACATGGTGGTGACATCAACAAGCTAAGAAGAGAACTACAACTGTCCATTTCCGTGGACCGTAAAGATGataaatggacaataaagtattCTTCTTCTAAACGGAGAAAGAACTACAACGGAATTGCTTGTCTATAAAGCTTATCGAGGACCATTAAGAGAGAGGACTCCAGTAGGACTCTAGCAGCCACGTGTTTTTATTATAGCTCTGAAGACAGAGGAAGTCGTCAGACCAGCGTACAGTTTAAACAGGGTGTCTGATGAGTACTGCCACAGCAACAGTTCCAGGAGTGGATTTAATGAGACACTGACATGATATTTATGGACTTTGAGTAGGTGAGGAGTATAAACTTAATCCACTTTCAGCTACTGAGCTGTGATGCAGAAGTACATTAACCCTAATCCACTTTCAGCTATCACTGAGCTGTGATGCAGATGTACAGTACATCCCCAGAGCCAAATAATGATCATGGGCATTTCGTCAGGGATCAAACCCAACCAGGGCAGGGACTGAGTGACTTTTGAGGCCCAAACCCAACCAGGGCAGGGACTGAGTGACCTTTGAGGCCCAAACCCAACCAGGGCAGGGACTGAGTGACCTTTGGGGCTATTGAACTAGTTATTTTCTCCTCTCTGCTTTTCCGGCCAAGTGGAAAGGCAGGCTGTTCTGGCAGTTGTCAATCTACGGCTGTAGCTGCTATAATCCCCAACCAATCCAAGCTCCTGTTGAGACAGAAACAGTACAACAACTCCCAACTCCACTCCCATTTGgaaacagagaggaagacagagagagacagagagagagagagaaagcactaACCAAACTCCTATTGAGACATAGAGAGACTTTACACTCACCAAAACAGAGACCGTGCACCAAACCAAGCCCCACGGACGGACGTACAGATTCCACGCCTGGTGACACTCTGGCTACTCTCCCGTCCCATCGGCGCCATGTTCTGGTCTCAGAGTGTAGCTGCCCCTCTGGTGCTGGTGTTGAACCCTCTCCTCCTAGTGTTGCTGCTGCAACAGCAGGTAACTGAGGCTGAGGTCTGGGCTGAGGATGAGGTCTGGGCTGAGGCCGAGATAGGGGCTGATGCTGGGGTCGGAGCAGAGGccggggttggggttggggtctGGGTTGATGCCGGAGTTGGGGCTGAGGCCAATGTTggggatgaggctggggtcaGGGGTGAGGCTGGGGTCAGGGGTAAGGCTGGGGTCAGGGGTAAGGCTGAGGTCGGGGCTGAGGTTGTGACTGAGGATGGGGTCGGGGCTGATTCTGGGGTTGGTGCTTGGGTCAGGGCTAAGGCTGAGGTTGGGGCTGTGGCTGTGACTGAGGCTGGGGTCAGGGCTAAGGCTAAGGTCAGGGCTGAGACTGTGACTGAGGCTGGGGTTGGGACTGAGGTCGGGGCTGATTCTGGGGTCGGTGCTTGGGTCAGGGCTAAGGCTGAGGTcagggctggggttggggctggggttgAGACTGTGACTGAGGTCGGGGTTGAGGCCGGACCTGGGGCTGAGGCTGGACCTGGGGCTGAGACCGGACCTGGGGCTGAGGTCAGTTTCGGAGCTTGTTTGGCTGGGGTcgggactagtgaggctgaggaTGGGGCTGAGGTcggggctagtgaggctgaggcTGAGGTCAGCAGCTGTCCCAAGGGATGCCTGTGTTGCTCTGACATCCTCAGCTGCGCCGACCAGGGTCTGAAGGCGCTGCCCTCTGAGCTGCATGCGTACATCACCACCCTAGACCTCAACCACAACCACCTGACTGAGTTGAAGGAGGGAAGCTTTGCCGCGCTGCCCCGTCTGGAGTCCCTCCGCCTGGCTCACAACCGGCTGAAATGCCTTGAGGCCGGAACCTTCCGGAACAGCAGATCGCTACGGCAACTGGACCTTTCGTCCAATCAGCTAGACAAAGTGGAGGTGCACTACTTTCTGGAGCTGACAGGATTGGAGGAGCTGCTGCTCTTCAACAACCGCATCGTTCGGGTGGAGAGCAAGGCCCTTGCGGCACTCGGTAACCTGCGCAAGGCCTACGTCAGCCACAACCACCTCACGGACTTCCCATTCTTCTCCATCCAGGAGGACAGCCACCCCTTCCTGGCCACCATGGACCTGTCCTCCAACAGCATGTCCAAACTCCCCCTGGTGGACATCGAGACCCTGCCGGCGGCCTTGCAGAGCGGACTCTTCCTCCACAACAACACCCTGATCTGCGAGTGCGAAATGTACAATATGTTCCGGCGCTGGGAACAGAAGGGATTCACCTCCGTCAGGGATTTTCGTGAGGAATACACCTGCCTGGTGTACGGGGAACGCAAGGCCTCCGTTAAGTTTTTCCAGCACAGACGCTTCTTTGAACTGAACTTAAACTGCAGTTCGGCGGTGGCTGGAGCTGTCAGGGAGCCTGAGGGCAGCCTGCTGGTGTACGAAGGAGATGGCGTGGTTCTGGACTGTCACACCACGCTCAGAGGACAGCACCTGACCTACCTGTGGGTCTCACCTCACCATGGAGCCGGTGCTCCGCCGGAGAACAACGGCACTCTCCGCATGCACGCCAACGGCAGCCTGGAGATCTTATCAGCGCAGGCTGAGGACTCCGGCGTGTACTGGTGCAAGGTCTTCGACGCAGTCAAGAAGAACGAGTCATGGGAGGTCAACGTGACGGTGTTGATGCGGCACGACGAGGCCGAGCCCTTCAACACGGGGTTTACAACCCTCATAGGGTGCGTGACGACCCTCGTCCTGGTCCTCATGTACCTCTACCTGACCCCCTGCCGCTGCTGGTGCTGCAAGCACCCCCTGCCGCCGGGTACCCCCAGCCCCGCCAACGACCAGTCCTCGATCCTGACCTCCCCCCCACCCAGCACCACAGAGGGCCCAGGCCGCAAGatgtgtGAATCTACCTTTACTATCACCGATCAAACTCCTCGTCTGGGAGCATGGAACAATCTTCCATCATCACGGTAACATCAGACGGCAGGGCAACCGACAGAGGCAGACTCCGGATGATGTCACaaaaaccacaacaacaaccaatTTCCTGAAAAAAGAGAGAAGACTAAAGTCTTTAAAGTAGGACTGAATAGTCTTCTATAACCAGCTTCAACAAAGACCACTGTCTCCTGTATAGGCACAGAGCGGTTTCTCCGTACACCACAAATAAGAGCCAACTAACTACCTATGCACATCTCACTCAATCACTGTGAATTGTAATGCTTTTAACGGAGCCACGAGGCCAAATATATCAGTATTGTTAGGCTATAGCACGGCGATGAAGAGGACAATGTTAGCAATCATTTGAAACATTATTATGTAGATAGTGAAAGTAGTCTAGAGTAACACAATATAGAATGGCTGACCTATAGTAGTGCAGAATTATTTGTAGATTATTTAGTGTAGATTATTTGTAGATTATTTAGTGCAGATTATTTGTAGATTATTTAGTGCAGATTATTTGTAGATTATTTAGTGCAGATTATTTGTAGATTATTTAGTGCAGATTATTTGTAGATTATTTAGTGCAGATTAATTGTAGATGATTTAGTGTAGATTAATTGTAGATTATTTAGTGTAGATTATTTGCAGATTATTAGTGTAAATTAATTGTAGATTATTTAGTGTAGATTATTTGTAGATTATTTAGTGCAGTTTGTTTGTAGATTATTTAGTGTAGATTCATTGTAGATAATTTAGTGTAGATTAATTGTAGATTATTTAGTGTAAATTATTTGTAGATTATTTAGTGCAGATTGTTTGTAGATTATTTAGTGCAGATTATTTGTAGATTATTGAGTGCAGATTGTTTGTAAATTATTTAGTGTAGATTCATTGTAGATAATTTAGTGTAGATTATTTGTAGATTATTTAGTGTAGATTATTTAGTGTAGATTATTTTCAGATAATTTAGTGTAGATTATTTGCAGATTTTTTGGTGTAGAATCTTTGTAGATTCTGTAGATAATTGGGACAAGATGGGGTTGGGTGAGCAGGGGATGGGCAATAAATAAATGGGATGAAATGGAGAAATTGCTTGAATATATcagataaataaaatatatttaacatcTACATATTCCTTTTTTTCTGACTATGAATGGTGATCATGTGCTCTTTGCATTAAGTGTTA

Function

NR:

description
amphoterin-induced protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950953.1 True 5266 mRNA 0.49 2 91484625 91522092

Neighbor

gene id symbol gene type direction distance location
LOC118940511 NA coding upstream 897318 90578344 ~ 90587307 (+)
LOC110494819 LOC106565061 coding upstream 1235879 90149682 ~ 90248746 (+)
LOC110494822 LOC106566210 coding upstream 1941217 89540160 ~ 89543408 (+)
LOC110494823 LOC106566211 coding upstream 1945360 89532719 ~ 89539265 (+)
LOC110493302 LOC106583746 coding upstream 1962230 89162750 ~ 89524314 (+)
LOC110494826 LOC106601490 coding downstream 331247 91837358 ~ 91867163 (+)
LOC110519238 vgll4 coding downstream 393310 91915402 ~ 92011967 (+)
LOC118940512 NA coding downstream 493445 92015537 ~ 92020588 (+)
LOC118940166 NA coding downstream 724302 92246394 ~ 92247096 (+)
LOC110504503 LOC106566236 coding downstream 760834 92282926 ~ 92317484 (+)
G1504911 NA non-coding upstream 70390 91413915 ~ 91414235 (+)
G1504912 NA non-coding upstream 72631 91410824 ~ 91411994 (+)
G1504859 NA non-coding upstream 101892 91212754 ~ 91382733 (+)
G1504914 NA non-coding upstream 184520 91299369 ~ 91300105 (+)
G1504865 NA non-coding upstream 190010 91279148 ~ 91294615 (+)
G1505249 NA non-coding downstream 27235 91549327 ~ 91549650 (+)
G1505253 NA non-coding downstream 29017 91551109 ~ 91551313 (+)
G1505255 NA non-coding downstream 33508 91555600 ~ 91555824 (+)
G1505266 NA non-coding downstream 40311 91562403 ~ 91562907 (+)
G1505299 NA non-coding downstream 70187 91592279 ~ 91594547 (+)
G1503337 NA other upstream 1260966 90221545 ~ 90223659 (+)
G1503119 NA other upstream 1698471 89768557 ~ 89786154 (+)
LOC110493303 LOC106566213 other upstream 2370529 89106147 ~ 89150807 (+)
G1502370 NA other upstream 2675656 88806978 ~ 88808969 (+)
G1502352 NA other upstream 2683985 88769870 ~ 88800640 (+)
G1505894 NA other downstream 797453 92319545 ~ 92320777 (+)
G1505924 LOC106566233 other downstream 926494 92447734 ~ 92467632 (+)
G1506406 NA other downstream 1344114 92866206 ~ 92867034 (+)
G1506889 NA other downstream 2054725 93576817 ~ 93577604 (+)

Expression


Co-expression Network